BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G26220.1
Length=932
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942209 jgi|Araly1|942209|scaffold_602753.1 1024 0.0
> Ahg942209 jgi|Araly1|942209|scaffold_602753.1
Length=698
Score = 1024 bits (554), Expect = 0.0
Identities = 652/699 (93%), Gaps = 8/699 (1%)
Strand=Plus/Plus
Query 52 GTGTGAGGCTAAGGATCAAAGATGGTTTTGTGGGTATTTGGATATGGTTCTTTGATCTGG 111
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1 GTGTGAGGCTAAGGATCAAAGATGGTTTTGTGGGTATTTGGATATGGATCTTTAATCTGG 60
Query 112 AACCCAGGTTTTGATTTTGATGAAAAACTCATTGGTTATATCAAGGACTATAAACGTGTC 171
||||||||||||||||||||||||||| |||||||||| ||||| || ||||||||||||
Sbjct 61 AACCCAGGTTTTGATTTTGATGAAAAAATCATTGGTTACATCAAAGATTATAAACGTGTC 120
Query 172 TTCGATCTAGCGTGTATTGATCATAGAGGTACTCCTGAACATCCTGCTAGGACTTGTACG 231
|| |||||||||||||||||||||||||| ||||||||||||||||| || ||||| |||
Sbjct 121 TTTGATCTAGCGTGTATTGATCATAGAGGCACTCCTGAACATCCTGCAAGAACTTGCACG 180
Query 232 CTGGAGCAATCCACCGGAGCTATTTGCTGGGGTGCTGCTTATTGTGTTCGTGGAGGACCA 291
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 TTGGAGCAATCCACCGGAGCTATTTGCTGGGGAGCTGCTTATTGTGTTCGTGGAGGACCA 240
Query 292 GAGAAAGAGAAACTAGCAATGGAGTACTTGGAACGAAGAGAGTGTGAATACGACTCAAAA 351
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 GAGAAGGAGAAACTAGCAATGGAGTACTTGGAACGAAGAGAGTGTGAATACGACTCCAAA 300
Query 352 ACACTTGTTGAGTTTTACACTGAAAATGACACTTC--C---A-CGCCAATCGTTACCGGA 405
|||||||||||||||||||||||||||||| |||| | | |||| ||||| ||||||
Sbjct 301 ACACTTGTTGAGTTTTACACTGAAAATGACTCTTCAACGGCAACGCCGATCGTAACCGGA 360
Query 406 GTTATTGTCTTCACGTCAACACCAGACAAAGTGTCGAACAAATACTACTTAGGTCCAGCT 465
||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 361 GTTATTGTCTTTACGTCAACGCCAGACAAAGTGTCGAACAAATACTATTTAGGTCCAGCT 420
Query 466 CCATTGGAAGAAATGGCGAGGCAAATCGCTACGGCTTCGGGACCTTGTGGGAACAACCGA 525
||| ||||||||||||| |||||||||||||| ||| | ||||| ||||| |||||| ||
Sbjct 421 CCACTGGAAGAAATGGCCAGGCAAATCGCTACAGCTACTGGACCGTGTGGCAACAACAGA 480
Query 526 GAGTATCTTTTCAAGCTAGAGAAAGCAATGTTCGACATTGAGCATGAGGAAGAGTATGTG 585
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 481 GAGTATCTTTTCAAGCTAGAGAAAGCAATGTACGATATTGAGCATGAGGAAGAGTATGTG 540
Query 586 ATTGAGTTAGCGAATGAGGTTAGGAAGCAACTCGATTTACCGGAGGAAGTGAAGGCATTG 645
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 541 ATTGAGTTAGCGAATGAGGTTAGGAAACAACTCGATTTACCGGAGGAAGTGAAGGCATTG 600
Query 646 TTGAAGCCTATTGTTTCTCATGTATCC-GTCAAGTCTCAAGCTCATGTTTCCACTCGTCA 704
||||||||| | ||||||| ||| ||| ||||||||||||||||||||||||||||||||
Sbjct 601 TTGAAGCCTGTGGTTTCTCGTGT-TCCCGTCAAGTCTCAAGCTCATGTTTCCACTCGTCA 659
Query 705 ACGGGTCTTTGCATCATGAAGACAGCAAAAGTTATGGAG 743
| |||||||||||||||||||| ||||||||| |||||
Sbjct 660 AAGGGTCTTTGCATCATGAAGATAGCAAAAGTCGTGGAG 698
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34577485719
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5