BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G26230.1
Length=1026
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489466 jgi|Araly1|489466|fgenesh2_kg.6__2600__AT5G26230.1 1413 0.0
> Ahg489466 jgi|Araly1|489466|fgenesh2_kg.6__2600__AT5G26230.1
Length=1008
Score = 1413 bits (765), Expect = 0.0
Identities = 946/1030 (92%), Gaps = 26/1030 (3%)
Strand=Plus/Plus
Query 1 ATGAGACGTCAACCACCACGTCCACGTAACTCACCACCGCAATCTCACTCATCTCCGTCG 60
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAACGTCAACCACCACGTACACGTAACTCACCACCGCAATCTCACTCATCTCCGTCG 60
Query 61 TCATCTTCATCGGAATTCGAATTTAACATCTCAATCTCGCCGCGAAAAGCTTCTTCTTCG 120
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 61 TCATCTTCATCGGAATTCGAATTCAACATCTCAATCTCGCCGCGAAAAGCTTCTTCTTCT 120
Query 121 CTTTGTCCCGCCGATGAACTCTTTTACAAAGGCCAGCTTCTTCCTCTTCAGctctctcct 180
|||||||| || ||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 121 CTTTGTCCTGCTGATGAACTCTTCTACAAAGGCCAGCTTCTTCCACTTCAGCTCTCTCCT 180
Query 181 cgtctctctctAGTCCGTACACT-TGGTTCTTCTACTTCTTCCTCAGACTACACTTCTTC 239
||||||||||| ||||||||||| || ||||||| | |||||||||| |||||||| ||
Sbjct 181 CGTCTCTCTCTCGTCCGTACACTCTG-TTCTTCT--T-CTTCCTCAGAGTACACTTCATC 236
Query 240 CTCTTCCTCCTCCGTCGCAACGTCCGCCGCACGTGACTCCACTGAATCTAACTCCTCCAC 299
|| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 237 TTCGTCCTCCTCCGCCGCAACCTCCGCCGCACGTGACTCCACTGAATCTAACTCCTCCAC 296
Query 300 TGATTCCACAGCTTCTTTCCCTCTCCTTCACCCTCCTCCGCTTGATTGTTGTGACTCTTC 359
||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 297 TGACTCCACCGCTTCTTTCCCTCTCCTCCACCCTCCTCCGCTTGATTGTTGTGACTCTTA 356
Query 360 TCGTCCTAGCTCTGTAACTGACGATGAAGATTTCTTCTTTAAACCTCCAAAGAACAAATC 419
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 357 TCGTCCTAGTTCTGTAACTGACGATGAAGATTTTTTCTTTAAACCTCCAAAGAACAAATC 416
Query 420 TTCAAGTGGTGGTTTCTCACTTTCTAGATTCTCCTCTGTTTTCAAGAAAGATCCCAAAAC 479
|| |||| |||||||||| || ||||||||||||||||||||||||||||| ||||||||
Sbjct 417 TTTAAGTAGTGGTTTCTCTCTCTCTAGATTCTCCTCTGTTTTCAAGAAAGACCCCAAAAC 476
Query 480 CAATCTCCACCACCACTCCTCCTCCTCTTCCACCGCAACAACCGCCGCAGCTCCGTCGTC 539
||||||||||| ||||||||||||||| ||| |||| | || ||||||||||||
Sbjct 477 CAATCTCCACCGCCACTCCTCCTCCTCCTCCTCCGC--C----GC---AGCTCCGTCGTC 527
Query 540 GGTGAAGAGAATGAGCTCAACAGCTAAAGAAGTAATACGGAAATACATGAAAAAAGTCAA 599
||| |||||||||||||||||||| |||||||| ||||| ||||| ||||||||||||||
Sbjct 528 GGTTAAGAGAATGAGCTCAACAGCGAAAGAAGTTATACGCAAATATATGAAAAAAGTCAA 587
Query 600 ACCATTATACGAAAAATTATCTCCAAAACAGAGCTCCAATATAAAAACAGAGTCATCATC 659
||| |||||||| || ||||||| |||||||||||||| ||||||||||||||| ||||
Sbjct 588 ACCTTTATACGACAAGTTATCTCAAAAACAGAGCTCCACTATAAAAACAGAGTCGTCATT 647
Query 660 ATCTCTCAAAGATTCCGGTAACAACATCCGTGGGACCACCACC--GT-AACCACCGTCAC 716
|||||||||||||||||| |||||||| ||| ||||||||| | ||||||||||||
Sbjct 648 ATCTCTCAAAGATTCCGGCAACAACATACGTAAAACCACCACCACGACAACCACCGTCAC 707
Query 717 CGCCGCTCCAACCGTTGTCTCCTCCGGTGGTGGTTTATCAATCTCTTTCTCCGGAAACCT 776
|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 708 AACCGCTCCAACCGTTGTCTCCTCCGGTAATGGTTTATCGATCTCTTTCTCCGGAAACCT 767
Query 777 AATGAAATACACAAAACGTGGACGATGCGCGGCGAGTTGTCCATCGTCGATGAGGTCATC 836
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 768 AATGAAATACACAAAACGAGGACGATGCGCGGCGAGTTGTCCATCGTCGATGAGGTCATC 827
Query 837 TCCGAATCACTCCGGTGTACTGACACGTGGCGGTTTTCCGGTTCATCAAGGTAGTTGCAG 896
||||||||||||||| |||||||||||||||||||| |||| ||||||||| || |
Sbjct 828 TCCGAATCACTCCGGCGTACTGACACGTGGCGGTTTACCGGGTCATCAAGG-AG---C-- 881
Query 897 TAGCAGCAGTAGCAACAACAACAGTGTGTCATCTTCAATGGAAGAGTTACAAAGTGCTAT 956
||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 882 TAGCAGCAG---CAACAATAACAGTGTGTCTTCTTCAATGGAAGAGTTACAAAGTGCTAT 938
Query 957 TCAAGGAGCTATTGCTCATTGCAAGAACTCAATGTTACAGAAGAATTTGGTTAGTAGTCT 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 939 TCAAGGAGCTATTGCTCATTGCAAGAACTCAATGTTACAGAAGAATTTGGTTAGTAGTCT 998
Query 1017 CGAGATCTAG 1026
||||||||||
Sbjct 999 CGAGATCTAG 1008
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38161039917
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5