BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G26250.1 Length=1644 Score E Sequences producing significant alignments: (Bits) Value Ahg351641 jgi|Araly1|351641|fgenesh1_pg.C_scaffold_6002234 2438 0.0 Ahg317457 jgi|Araly1|317457|fgenesh1_pm.C_scaffold_3000473 1264 0.0 Ahg489474 jgi|Araly1|489474|fgenesh2_kg.6__2608__AT5G26340.1 110 5e-23 > Ahg351641 jgi|Araly1|351641|fgenesh1_pg.C_scaffold_6002234 Length=1524 Score = 2438 bits (1320), Expect = 0.0 Identities = 1456/1524 (96%), Gaps = 0/1524 (0%) Strand=Plus/Plus Query 1 ATGGCTGTGGTTATATCTTCTAATGGTAATTCCAAGTCTTTCGACGCGAAGATGACTGTT 60 ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| Sbjct 1 ATGGCTGTGGTTATATCGTCTAATGGTAATTCCAAGGCTTTCGACGCGAAGATGACTGTT 60 Query 61 TATGTCTTCATCTGTGTCATTATCGCGGCTGTAGGCGGTTTGATCTTCGGTTACGACATC 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TATGTCTTCATCTGTGTCATTATCGCGGCTGTAGGCGGTTTGATCTTCGGTTACGACATC 120 Query 121 GGAATCTCGGGTGGAGTAACGGCGATGGACGATTTCTTGAAGGAATTTTTCCCATCTGTG 180 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GGAATCTCTGGTGGAGTAACGGCGATGGACGATTTCTTGAAGGAATTTTTCCCATCTGTG 180 Query 181 TACGAAAGGAAGAAGCATGCGCATGAGAACAACTATTGCAAGTATGACAACCAGTTCTTG 240 ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 181 TACGAGAGGAAGAAGCATGCGCATGAGAACAACTATTGCAAGTACGACAACCAGTTCTTG 240 Query 241 CAGCTCTTCACTTCCTCTCTATACCTAGCGGCTCTAGTGGCTAGCTTCTTTGCTTCGGCT 300 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 241 CAGCTCTTCACTTCCTCTCTATACCTTGCGGCTCTAGTGGCTAGCTTCTTTGCTTCCGCT 300 Query 301 ACATGCTCTAAGCTCGGACGCAGACCCACAATGCAACTCGCTTCCATCTTCTTCTTGATC 360 || |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 301 ACGTGCTCTAAGCTCGGACGCAGACCCACAATGCAGCTCGCTTCCATTTTCTTCTTGATC 360 Query 361 GGTGTTGGCCTTGCCGCGGGAGCTGTTAACATATACATGTTGATCATTGGTAGAATCTTG 420 ||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||| Sbjct 361 GGTGTTGGCCTAGCCGCGGGAGCTGTTAACATTTACATGTTGATCTTTGGTAGAATCTTG 420 Query 421 CTTGGATTCGGTGTTGGCTTTGGTAATCAGGCGGTACCGCTTTTCTTATCAGAGATTGCT 480 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 421 CTTGGATTCGGTGTTGGCTTTGGTAATCAGGCGGTACCACTTTTCTTATCAGAGATTGCT 480 Query 481 CCCGCGAGGCTTCGTGGAGGTCTCAACATTGTTTTCCAACTTATGGTTACAATTGGAATC 540 || || ||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 481 CCGGCTAGGCTTCGTGGAGGTCTCAACATTGTTTTCCAACTAATGGTTACAATTGGAATC 540 Query 541 CTAATTGCTAACATAGTCAACTACTTCACCTCCTCAATTCATCCTTACGGATGGAGAATT 600 ||||| |||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 541 CTAATCGCTAACATAGTCAACTACTTCACCTCCTCAATTCATCCTTACGGATGGCGACTT 600 Query 601 GCCCTCGGTGGCGCGGGAATTCCGGCTCTCATCCTCCTCTTTGGATCGCTTCTCATCTGC 660 ||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||||||| Sbjct 601 GCCCTTGGTGGCGCGGGAATTCCTGCTCTCATCCTCCTCTTCGGATCACTTCTCATCTGC 660 Query 661 GAAACACCCACTAGTCTCATCGAACGGAACAAAACCAAGGAAGGAAAAGAAACACTCAAG 720 |||||||| || |||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 661 GAAACACCAACAAGTCTCATCGAACGGAACAAAACCAAGGAAGGCAAAGAAACGCTCAAG 720 Query 721 AAGATCAGAGGCGTTGAAGATGTTGATGAGGAGTATGAATCAATAGTCCATGCTTGCGAT 780 ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 721 AAGATTAGAGGCGTTGAAGATGTTGATGAGGAGTATGAATCAATCGTCCATGCTTGCGAT 780 Query 781 ATCGCAAGGCAGGTCAAGGACCCTTACACGAAACTGATGAAACCCGCGAGCAGGCCGCCT 840 |||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 781 TTCGCGAGGCAGGTCAAGGACCCTTACACGAAACTGATGAAACCCGCGAGCCGACCGCCT 840 Query 841 TTCGTGATTGGAATGTTGCTACAGTTTTTCCAACAGTTCACTGGAATCAACGCGATTATG 900 |||||||| ||||||||||| |||||||||||||| |||||||||||||||| |||||| Sbjct 841 TTCGTGATAGGAATGTTGCTCCAGTTTTTCCAACAACTCACTGGAATCAACGCAATTATG 900 Query 901 TTCTACGCTCCGGTTTTGTTCCAGACTGTAGGGTTTGGAAATGACGCAGCTCTGCTTTCC 960 ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 901 TTCTATGCTCCGGTTTTGTTCCAGACCGTAGGGTTTGGAAATGACGCAGCTCTGCTTTCC 960 Query 961 GCGGTTGTCACGGGAACGATCAACGTTCTCAGCACGTTTGTCGGGATTTTCCTTGTCGAC 1020 |||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 961 GCGGTTATCACGGGAACTATCAACGTTCTCAGCACGTTTGTCGGGATTTTCCTCGTCGAC 1020 Query 1021 AAAACTGGCCGAAGATTTCTATTGCTCCAATCTTCCGTTCACATGCTCATATGCCAGTTG 1080 ||||| ||||||||||||||||||||||| |||||||||||||||||| | ||||||||| Sbjct 1021 AAAACCGGCCGAAGATTTCTATTGCTCCAGTCTTCCGTTCACATGCTCGTCTGCCAGTTG 1080 Query 1081 GTCATTGGAATCATCCTAGCCAAGGACCTAGACGTGACGGGTACGCTAGCACGGCCACAA 1140 |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| Sbjct 1081 GTCATTGGAATCATCCTAGCCAAGGACCTAGACGTGACGGGTACACTAGGACGGCCACAA 1140 Query 1141 GCCCTAGTAGTGGTGATCTTCGTGTGTGTTTACGTGATGGGTTTCGCTTGGTCATGGGGC 1200 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1141 GCCCTAGTAGTGGTGATCTTCGTGTGCGTTTACGTGATGGGTTTCGCTTGGTCATGGGGT 1200 Query 1201 CCTCTAGGATGGCTAATCCCTAGTGAGACCTTCCCCTTGGAGACTCGAACGGAAGGGTTC 1260 ||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||| Sbjct 1201 CCTCTAGGATGGCTAATCCCTAGCGAGACCTTCCCCGTGGAGACTCGAACCGAAGGGTTC 1260 Query 1261 GCATTGGCCGTGTCTTGCAACATGTTCTTCACGTTCGTGATCGCTCAGGCCTTCCTATCG 1320 || ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1261 GCTTTGGCGGTGTCGTGCAACATGTTCTTCACGTTCGTGATCGCTCAGGCCTTCCTGTCG 1320 Query 1321 ATGCTTTGCGCGATGAAGTCAGGGATATTCTTCTTCTTCAGTGGTTGGATCGTTGTGATG 1380 |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1321 ATGCTTTGCGGGATGAAGTCAGGTATATTCTTCTTCTTCAGTGGTTGGATCGTTGTGATG 1380 Query 1381 GGACTTTTCGCTTTGTTCTTCGTGCCGGAAACGAAAGGAGTCTCCATTGATGACATGAGA 1440 ||||||||||||||||||||||||||||| |||||||||||| | || |||||||||||| Sbjct 1381 GGACTTTTCGCTTTGTTCTTCGTGCCGGAGACGAAAGGAGTCGCGATCGATGACATGAGA 1440 Query 1441 GATAGTGTGTGGAAGCTACATTGGTACTGGAAGAGGTTTATGCTCGAGGAAGATGAGCAT 1500 ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1441 GATAGCGTGTGGAAGCTACATTGGTACTGGAAGAGGTTTATGCTTGAGGAAGATGAGCAT 1500 Query 1501 GACGTTGAGAAGAGAACTGATTGA 1524 ||||| |||||||||||||||||| Sbjct 1501 GACGTAGAGAAGAGAACTGATTGA 1524 > Ahg317457 jgi|Araly1|317457|fgenesh1_pm.C_scaffold_3000473 Length=1524 Score = 1264 bits (684), Expect = 0.0 Identities = 1269/1549 (82%), Gaps = 50/1549 (3%) Strand=Plus/Plus Query 1 ATGGCTGTGGTTATATCTTCTAATGGTAAT--TCCAAGTCTTTCGACGCGAAGATGACTG 58 |||||||| | | | | |||||||| |||| ||| | |||| || || |||||||||| Sbjct 1 ATGGCTGTTG-T-TGT-TTCTAATGCTAATGCTCC-GGCCTTT-GAGGCCAAGATGACTG 55 Query 59 TTTATGTCTTCATCTGTGTCATTATCGCGGCTGTAGGCGGTTTGATCTTCGGTTACGACA 118 | |||||||||||||| || || || || ||||| ||||||||||||||||||||||||| Sbjct 56 TCTATGTCTTCATCTGCGTTATGATTGCCGCTGTCGGCGGTTTGATCTTCGGTTACGACA 115 Query 119 TCGGAATCTCGGGTGGAGTAACG-GCGATGGACGATTTCTTGAAGGAATTTTTCCCATCT 177 | ||||| || |||||||||| | ||||||||||||||| |||||||||||||||| || Sbjct 116 TAGGAATTTCCGGTGGAGTAA-GTGCGATGGACGATTTCCTGAAGGAATTTTTCCCGGCT 174 Query 178 GTGTACGAAAGGAAGAAGCATGCGCATGAGAACAACTATTGCAAGTATGACAACCAGTTC 237 |||| || ||||||||||| | || ||||||||||| |||||||| || ||||||||| Sbjct 175 GTGTGGGAGAGGAAGAAGCACGTACACGAGAACAACTACTGCAAGTACGATAACCAGTTC 234 Query 238 TTGCAGCTCTTCACTTCCTCTCTATACCTAGCGGCTCTAGTGGCTAGCTTCTTTGCTTCG 297 ||||| || ||||| || || || |||||||| || || ||||| |||||||| ||||| Sbjct 235 TTGCAACTATTCACCTCGTCCCTTTACCTAGCTGCCCTCGTGGCCAGCTTCTTCGCTTCC 294 Query 298 GCTACATGCTCTAAGCTCGGACGCAGACCCACAATGCAACTCGCTTCCATCTTCTTCTTG 357 || || || ||||| || |||||||| || || ||||| | ||||| |||||||||||| Sbjct 295 GCCACCTGTTCTAAACTTGGACGCAGGCCGACTATGCAGTTTGCTTCTATCTTCTTCTTG 354 Query 358 ATCGGTGTTGGCCTTGCCGCGGGAGCTGTTAACAT-ATACATGTTGATCATTGGTAGAAT 416 || ||||| || || | || ||||| |||||| | | ||||||||||||||| ||| | Sbjct 355 ATTGGTGTCGGTCTCACTGCAGGAGCCGTTAACCTCGT-CATGTTGATCATTGGAAGACT 413 Query 417 CTTGCTTGGATTCGGTGTTGGCTTTGGTAATCAGGCGGTACCGCTTTTCTTATCAGAGAT 476 ||| ||||| || ||||| || ||||| |||||||| || ||||||||| | || ||||| Sbjct 414 CTTCCTTGGCTTTGGTGTCGGATTTGGCAATCAGGCAGTGCCGCTTTTCCTGTCTGAGAT 473 Query 477 TGCTCCCGCGA-GGCTTCGTGGAGGTCTCAACATTGTTTTCCAACTTATGGTTACAATTG 535 |||||| || | ||| || ||||||||||||||||| |||||||| ||||||||||| | Sbjct 474 TGCTCCAGC-ACAGCTCCGAGGAGGTCTCAACATTGTATTCCAACTCATGGTTACAATCG 532 Query 536 GAATCCTAATTGCTAACATAGTCAACTACTTCACCT-CCTCAATTCATCCTTACGGATGG 594 ||||||||||||| ||||| ||||||||||||| || || | | || |||||||||||| Sbjct 533 GAATCCTAATTGCCAACATTGTCAACTACTTCA-CTGCCACGGTCCACCCTTACGGATGG 591 Query 595 AGAATTGCCCTCGGTGGCGCGGGAATTCCGGCTCTCATCCTCCTCTTTGGATCGCTTCTC 654 ||||||| |||||||| || |||||||| ||| | ||||| ||||| || || || || Sbjct 592 CGAATTGCTCTCGGTGGAGCCGGAATTCCCGCTGTTATCCTTCTCTTCGGTTCACTACTT 651 Query 655 ATC-TGCGAAACACCCACTAGTCTCATCGAACGGAACAA-AACCAAGGAAGGAAAAGAAA 712 ||| | || || ||||| || |||||||| || ||||| || || |||||||||||| Sbjct 652 ATCAT-TGAGACGCCCACAAGCCTCATCGAGCGCAACAAGAATGAA-GAAGGAAAAGAAG 709 Query 713 CACTCAA-GAAGATCAGAGGCGTTGAAGATGTTGATGAGGAGTATGAATCAATAGTCCAT 771 | || || |||||||||||| ||||| ||| | |||| |||||||| || || |||||| Sbjct 710 CCCT-AAGGAAGATCAGAGGAGTTGATGATATCAATGACGAGTATGAGTCTATCGTCCAT 768 Query 772 GCTTGCGATATCGCAAGGCAGGTCAAGGACCCTTACACGAAACTGATGAAACCCGCGAG- 830 || ||||| ||||| || || |||||||||||||||| ||||||| |||| || || || Sbjct 769 GCCTGCGACATCGCGAGTCAAGTCAAGGACCCTTACAGGAAACTGTTGAAGCCTGCTAGT 828 Query 831 CAGGCCGCCTTTCGTGATTGGAATG-TTGCTACAGTTTTTCCAACAGTTCACTGGAATCA 889 | | || || ||| | || |||||| || || ||| |||||||||| || || ||||||| Sbjct 829 C-GCCCACCGTTCATCATCGGAATGCTT-CTCCAGCTTTTCCAACAATTTACCGGAATCA 886 Query 890 ACGCGATTATGTTCTACGCTCCGGTTTTGTTCCAGACTGTAGGGTTTGGAAATGACGCAG 949 | |||||||||||||| || |||||||| ||||| ||||| || || |||| ||||||| Sbjct 887 ATGCGATTATGTTCTATGCACCGGTTTTATTCCAAACTGTTGGATTCGGAAGCGACGCAG 946 Query 950 CTCTGCTTTCCGCGGTTGTCACGGGAACGATCAACGTTCTCAG-CACGTTTGTCGGGATT 1008 |||| || || |||||| |||| ||||| ||||| |||||| | ||| || || |||||| Sbjct 947 CTCTTCTCTCTGCGGTTATCACCGGAACAATCAATGTTCTC-GCCACATTCGTTGGGATT 1005 Query 1009 TTCCTTGTCGACAAAACTGGCCGAAGATTTC-TATTGCTCCAATCTTCCGTTCACATGCT 1067 | ||| || |||||||| ||| | ||||| | | || ||||||||||||||||||||||| Sbjct 1006 TACCTCGTTGACAAAACCGGCAGGAGATTCCTTCTT-CTCCAATCTTCCGTTCACATGCT 1064 Query 1068 CATATGCCAGTTGGTCATTGGAATCATCCTAGCCAAGGACCTAGACGTGACGGGTACGCT 1127 ||| ||||||||| ||||||||||||||||||| |||||| | | | ||||| || || Sbjct 1065 CATCTGCCAGTTGATCATTGGAATCATCCTAGCAAAGGACTTGGGTATAACGGGAACACT 1124 Query 1128 -AGCACGGCCACAAGCCCTAGTAGTGGTGATCTTCGTGTGTGTTTACGTGATGGG-TTTC 1185 | | |||||||||||||||||||||||||||| ||||| |||||||||||||| ||| Sbjct 1125 CGGGA-GGCCACAAGCCCTAGTAGTGGTGATCTTTGTGTGCGTTTACGTGATGGGCTTT- 1182 Query 1186 GCTTGGTCATGGGG-CCCTCTAGGATGGCTAATCCCTAGTGAGACCTTCCC-CTTGGAGA 1243 || ||||||||||| |||| ||||||||||||| ||||| ||||| || || || | | | Sbjct 1183 GCATGGTCATGGGGACCCT-TAGGATGGCTAATTCCTAGCGAGACGTTTCCTCTAGAA-A 1240 Query 1244 CTCGAA-CGGAAGGGTTCGCA-TTGGCCGTGTCTTGCAACATGTTCTTCACGTTCGTGAT 1301 | || | || | || ||||| ||| | || || ||||||||||||||||| ||||| || Sbjct 1241 CCCGTAGCGCA-GGATTCGCTGTTG-CAGTCTCGTGCAACATGTTCTTCACTTTCGTAAT 1298 Query 1302 CGCTCAGGCCTTCCTATCGATGCTTTGCGCGATGA-AGTCAGGGATATTCTTCTTCTTCA 1360 |||||| |||||||||||||||||||||| ||||| | || || |||||||||||||||| Sbjct 1299 CGCTCAAGCCTTCCTATCGATGCTTTGCGGGATGAGA-TCTGGAATATTCTTCTTCTTCA 1357 Query 1361 GTGGTTGGATCGTTGTGATGGGACT-TTT-CGCTTTGTTCTTCGTGCCGGAAACGAAAGG 1418 | | ||||||| ||||||||||||| ||| || ||| |||||| | || || || ||||| Sbjct 1358 GCGCTTGGATCATTGTGATGGGACTGTTTGCG-TTT-TTCTTCATACCAGAGACAAAAGG 1415 Query 1419 AGTCTCCATTGATGACATGAGAGATAGTGTGTGGAAGCTACATTGGTACTGGAAGAGGTT 1478 | || ||||||||||||||||||| ||||||||||||| |||||||| |||||| |||| Sbjct 1416 AATCGCCATTGATGACATGAGAGAGAGTGTGTGGAAGCCACATTGGTTCTGGAAAAGGTA 1475 Query 1479 TATGCT-C--GAGGAAGATGAGCATGACGTTGAGAAGAGAACTGATTGA 1524 |||||| | ||||| || | ||||||||||||||||||| || |||| Sbjct 1476 TATGCTTCCAGAGGACGACCACCATGACGTTGAGAAGAGAAATGCTTGA 1524 > Ahg489474 jgi|Araly1|489474|fgenesh2_kg.6__2608__AT5G26340.1 Length=1868 Score = 110 bits (59), Expect = 5e-23 Identities = 112/136 (82%), Gaps = 10/136 (7%) Strand=Plus/Plus Query 860 TACAGTTTTTCCAACAGT-TCACTGGAATCAACGCGATTATGTTCTACGCTCCGGTTTTG 918 ||||| |||||||||| | | |||||||||||||||||||||||||||||||| ||| || Sbjct 924 TACAGATTTTCCAACAATGT-ACTGGAATCAACGCGATTATGTTCTACGCTCCTGTTCTG 982 Query 919 TTCCAGACTGTAGGGTTTGGAAATGACGCAGCTCTGCTTT-C-C-GCGGTTGTCACGGGA 975 ||| | || ||||||||||| |||||||| ||| |||| | | || || ||||| ||| Sbjct 983 TTCAACACAGTAGGGTTTGGCAATGACGCT--TCT-CTTTACTCTGCAGTGGTCACCGGA 1039 Query 976 AC-GATCAACGTTCTC 990 | | ||||||| ||| Sbjct 1040 GCAG-TCAACGTCCTC 1054 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61630016410 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5