BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G26250.1
Length=1644
Score E
Sequences producing significant alignments: (Bits) Value
Ahg351641 jgi|Araly1|351641|fgenesh1_pg.C_scaffold_6002234 2438 0.0
Ahg317457 jgi|Araly1|317457|fgenesh1_pm.C_scaffold_3000473 1264 0.0
Ahg489474 jgi|Araly1|489474|fgenesh2_kg.6__2608__AT5G26340.1 110 5e-23
> Ahg351641 jgi|Araly1|351641|fgenesh1_pg.C_scaffold_6002234
Length=1524
Score = 2438 bits (1320), Expect = 0.0
Identities = 1456/1524 (96%), Gaps = 0/1524 (0%)
Strand=Plus/Plus
Query 1 ATGGCTGTGGTTATATCTTCTAATGGTAATTCCAAGTCTTTCGACGCGAAGATGACTGTT 60
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGGCTGTGGTTATATCGTCTAATGGTAATTCCAAGGCTTTCGACGCGAAGATGACTGTT 60
Query 61 TATGTCTTCATCTGTGTCATTATCGCGGCTGTAGGCGGTTTGATCTTCGGTTACGACATC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TATGTCTTCATCTGTGTCATTATCGCGGCTGTAGGCGGTTTGATCTTCGGTTACGACATC 120
Query 121 GGAATCTCGGGTGGAGTAACGGCGATGGACGATTTCTTGAAGGAATTTTTCCCATCTGTG 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGAATCTCTGGTGGAGTAACGGCGATGGACGATTTCTTGAAGGAATTTTTCCCATCTGTG 180
Query 181 TACGAAAGGAAGAAGCATGCGCATGAGAACAACTATTGCAAGTATGACAACCAGTTCTTG 240
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 TACGAGAGGAAGAAGCATGCGCATGAGAACAACTATTGCAAGTACGACAACCAGTTCTTG 240
Query 241 CAGCTCTTCACTTCCTCTCTATACCTAGCGGCTCTAGTGGCTAGCTTCTTTGCTTCGGCT 300
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 241 CAGCTCTTCACTTCCTCTCTATACCTTGCGGCTCTAGTGGCTAGCTTCTTTGCTTCCGCT 300
Query 301 ACATGCTCTAAGCTCGGACGCAGACCCACAATGCAACTCGCTTCCATCTTCTTCTTGATC 360
|| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 301 ACGTGCTCTAAGCTCGGACGCAGACCCACAATGCAGCTCGCTTCCATTTTCTTCTTGATC 360
Query 361 GGTGTTGGCCTTGCCGCGGGAGCTGTTAACATATACATGTTGATCATTGGTAGAATCTTG 420
||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 361 GGTGTTGGCCTAGCCGCGGGAGCTGTTAACATTTACATGTTGATCTTTGGTAGAATCTTG 420
Query 421 CTTGGATTCGGTGTTGGCTTTGGTAATCAGGCGGTACCGCTTTTCTTATCAGAGATTGCT 480
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 421 CTTGGATTCGGTGTTGGCTTTGGTAATCAGGCGGTACCACTTTTCTTATCAGAGATTGCT 480
Query 481 CCCGCGAGGCTTCGTGGAGGTCTCAACATTGTTTTCCAACTTATGGTTACAATTGGAATC 540
|| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 CCGGCTAGGCTTCGTGGAGGTCTCAACATTGTTTTCCAACTAATGGTTACAATTGGAATC 540
Query 541 CTAATTGCTAACATAGTCAACTACTTCACCTCCTCAATTCATCCTTACGGATGGAGAATT 600
||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 541 CTAATCGCTAACATAGTCAACTACTTCACCTCCTCAATTCATCCTTACGGATGGCGACTT 600
Query 601 GCCCTCGGTGGCGCGGGAATTCCGGCTCTCATCCTCCTCTTTGGATCGCTTCTCATCTGC 660
||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct 601 GCCCTTGGTGGCGCGGGAATTCCTGCTCTCATCCTCCTCTTCGGATCACTTCTCATCTGC 660
Query 661 GAAACACCCACTAGTCTCATCGAACGGAACAAAACCAAGGAAGGAAAAGAAACACTCAAG 720
|||||||| || |||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 661 GAAACACCAACAAGTCTCATCGAACGGAACAAAACCAAGGAAGGCAAAGAAACGCTCAAG 720
Query 721 AAGATCAGAGGCGTTGAAGATGTTGATGAGGAGTATGAATCAATAGTCCATGCTTGCGAT 780
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 721 AAGATTAGAGGCGTTGAAGATGTTGATGAGGAGTATGAATCAATCGTCCATGCTTGCGAT 780
Query 781 ATCGCAAGGCAGGTCAAGGACCCTTACACGAAACTGATGAAACCCGCGAGCAGGCCGCCT 840
|||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 781 TTCGCGAGGCAGGTCAAGGACCCTTACACGAAACTGATGAAACCCGCGAGCCGACCGCCT 840
Query 841 TTCGTGATTGGAATGTTGCTACAGTTTTTCCAACAGTTCACTGGAATCAACGCGATTATG 900
|||||||| ||||||||||| |||||||||||||| |||||||||||||||| ||||||
Sbjct 841 TTCGTGATAGGAATGTTGCTCCAGTTTTTCCAACAACTCACTGGAATCAACGCAATTATG 900
Query 901 TTCTACGCTCCGGTTTTGTTCCAGACTGTAGGGTTTGGAAATGACGCAGCTCTGCTTTCC 960
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 901 TTCTATGCTCCGGTTTTGTTCCAGACCGTAGGGTTTGGAAATGACGCAGCTCTGCTTTCC 960
Query 961 GCGGTTGTCACGGGAACGATCAACGTTCTCAGCACGTTTGTCGGGATTTTCCTTGTCGAC 1020
|||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 961 GCGGTTATCACGGGAACTATCAACGTTCTCAGCACGTTTGTCGGGATTTTCCTCGTCGAC 1020
Query 1021 AAAACTGGCCGAAGATTTCTATTGCTCCAATCTTCCGTTCACATGCTCATATGCCAGTTG 1080
||||| ||||||||||||||||||||||| |||||||||||||||||| | |||||||||
Sbjct 1021 AAAACCGGCCGAAGATTTCTATTGCTCCAGTCTTCCGTTCACATGCTCGTCTGCCAGTTG 1080
Query 1081 GTCATTGGAATCATCCTAGCCAAGGACCTAGACGTGACGGGTACGCTAGCACGGCCACAA 1140
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 1081 GTCATTGGAATCATCCTAGCCAAGGACCTAGACGTGACGGGTACACTAGGACGGCCACAA 1140
Query 1141 GCCCTAGTAGTGGTGATCTTCGTGTGTGTTTACGTGATGGGTTTCGCTTGGTCATGGGGC 1200
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1141 GCCCTAGTAGTGGTGATCTTCGTGTGCGTTTACGTGATGGGTTTCGCTTGGTCATGGGGT 1200
Query 1201 CCTCTAGGATGGCTAATCCCTAGTGAGACCTTCCCCTTGGAGACTCGAACGGAAGGGTTC 1260
||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||
Sbjct 1201 CCTCTAGGATGGCTAATCCCTAGCGAGACCTTCCCCGTGGAGACTCGAACCGAAGGGTTC 1260
Query 1261 GCATTGGCCGTGTCTTGCAACATGTTCTTCACGTTCGTGATCGCTCAGGCCTTCCTATCG 1320
|| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1261 GCTTTGGCGGTGTCGTGCAACATGTTCTTCACGTTCGTGATCGCTCAGGCCTTCCTGTCG 1320
Query 1321 ATGCTTTGCGCGATGAAGTCAGGGATATTCTTCTTCTTCAGTGGTTGGATCGTTGTGATG 1380
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1321 ATGCTTTGCGGGATGAAGTCAGGTATATTCTTCTTCTTCAGTGGTTGGATCGTTGTGATG 1380
Query 1381 GGACTTTTCGCTTTGTTCTTCGTGCCGGAAACGAAAGGAGTCTCCATTGATGACATGAGA 1440
||||||||||||||||||||||||||||| |||||||||||| | || ||||||||||||
Sbjct 1381 GGACTTTTCGCTTTGTTCTTCGTGCCGGAGACGAAAGGAGTCGCGATCGATGACATGAGA 1440
Query 1441 GATAGTGTGTGGAAGCTACATTGGTACTGGAAGAGGTTTATGCTCGAGGAAGATGAGCAT 1500
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1441 GATAGCGTGTGGAAGCTACATTGGTACTGGAAGAGGTTTATGCTTGAGGAAGATGAGCAT 1500
Query 1501 GACGTTGAGAAGAGAACTGATTGA 1524
||||| ||||||||||||||||||
Sbjct 1501 GACGTAGAGAAGAGAACTGATTGA 1524
> Ahg317457 jgi|Araly1|317457|fgenesh1_pm.C_scaffold_3000473
Length=1524
Score = 1264 bits (684), Expect = 0.0
Identities = 1269/1549 (82%), Gaps = 50/1549 (3%)
Strand=Plus/Plus
Query 1 ATGGCTGTGGTTATATCTTCTAATGGTAAT--TCCAAGTCTTTCGACGCGAAGATGACTG 58
|||||||| | | | | |||||||| |||| ||| | |||| || || ||||||||||
Sbjct 1 ATGGCTGTTG-T-TGT-TTCTAATGCTAATGCTCC-GGCCTTT-GAGGCCAAGATGACTG 55
Query 59 TTTATGTCTTCATCTGTGTCATTATCGCGGCTGTAGGCGGTTTGATCTTCGGTTACGACA 118
| |||||||||||||| || || || || ||||| |||||||||||||||||||||||||
Sbjct 56 TCTATGTCTTCATCTGCGTTATGATTGCCGCTGTCGGCGGTTTGATCTTCGGTTACGACA 115
Query 119 TCGGAATCTCGGGTGGAGTAACG-GCGATGGACGATTTCTTGAAGGAATTTTTCCCATCT 177
| ||||| || |||||||||| | ||||||||||||||| |||||||||||||||| ||
Sbjct 116 TAGGAATTTCCGGTGGAGTAA-GTGCGATGGACGATTTCCTGAAGGAATTTTTCCCGGCT 174
Query 178 GTGTACGAAAGGAAGAAGCATGCGCATGAGAACAACTATTGCAAGTATGACAACCAGTTC 237
|||| || ||||||||||| | || ||||||||||| |||||||| || |||||||||
Sbjct 175 GTGTGGGAGAGGAAGAAGCACGTACACGAGAACAACTACTGCAAGTACGATAACCAGTTC 234
Query 238 TTGCAGCTCTTCACTTCCTCTCTATACCTAGCGGCTCTAGTGGCTAGCTTCTTTGCTTCG 297
||||| || ||||| || || || |||||||| || || ||||| |||||||| |||||
Sbjct 235 TTGCAACTATTCACCTCGTCCCTTTACCTAGCTGCCCTCGTGGCCAGCTTCTTCGCTTCC 294
Query 298 GCTACATGCTCTAAGCTCGGACGCAGACCCACAATGCAACTCGCTTCCATCTTCTTCTTG 357
|| || || ||||| || |||||||| || || ||||| | ||||| ||||||||||||
Sbjct 295 GCCACCTGTTCTAAACTTGGACGCAGGCCGACTATGCAGTTTGCTTCTATCTTCTTCTTG 354
Query 358 ATCGGTGTTGGCCTTGCCGCGGGAGCTGTTAACAT-ATACATGTTGATCATTGGTAGAAT 416
|| ||||| || || | || ||||| |||||| | | ||||||||||||||| ||| |
Sbjct 355 ATTGGTGTCGGTCTCACTGCAGGAGCCGTTAACCTCGT-CATGTTGATCATTGGAAGACT 413
Query 417 CTTGCTTGGATTCGGTGTTGGCTTTGGTAATCAGGCGGTACCGCTTTTCTTATCAGAGAT 476
||| ||||| || ||||| || ||||| |||||||| || ||||||||| | || |||||
Sbjct 414 CTTCCTTGGCTTTGGTGTCGGATTTGGCAATCAGGCAGTGCCGCTTTTCCTGTCTGAGAT 473
Query 477 TGCTCCCGCGA-GGCTTCGTGGAGGTCTCAACATTGTTTTCCAACTTATGGTTACAATTG 535
|||||| || | ||| || ||||||||||||||||| |||||||| ||||||||||| |
Sbjct 474 TGCTCCAGC-ACAGCTCCGAGGAGGTCTCAACATTGTATTCCAACTCATGGTTACAATCG 532
Query 536 GAATCCTAATTGCTAACATAGTCAACTACTTCACCT-CCTCAATTCATCCTTACGGATGG 594
||||||||||||| ||||| ||||||||||||| || || | | || ||||||||||||
Sbjct 533 GAATCCTAATTGCCAACATTGTCAACTACTTCA-CTGCCACGGTCCACCCTTACGGATGG 591
Query 595 AGAATTGCCCTCGGTGGCGCGGGAATTCCGGCTCTCATCCTCCTCTTTGGATCGCTTCTC 654
||||||| |||||||| || |||||||| ||| | ||||| ||||| || || || ||
Sbjct 592 CGAATTGCTCTCGGTGGAGCCGGAATTCCCGCTGTTATCCTTCTCTTCGGTTCACTACTT 651
Query 655 ATC-TGCGAAACACCCACTAGTCTCATCGAACGGAACAA-AACCAAGGAAGGAAAAGAAA 712
||| | || || ||||| || |||||||| || ||||| || || ||||||||||||
Sbjct 652 ATCAT-TGAGACGCCCACAAGCCTCATCGAGCGCAACAAGAATGAA-GAAGGAAAAGAAG 709
Query 713 CACTCAA-GAAGATCAGAGGCGTTGAAGATGTTGATGAGGAGTATGAATCAATAGTCCAT 771
| || || |||||||||||| ||||| ||| | |||| |||||||| || || ||||||
Sbjct 710 CCCT-AAGGAAGATCAGAGGAGTTGATGATATCAATGACGAGTATGAGTCTATCGTCCAT 768
Query 772 GCTTGCGATATCGCAAGGCAGGTCAAGGACCCTTACACGAAACTGATGAAACCCGCGAG- 830
|| ||||| ||||| || || |||||||||||||||| ||||||| |||| || || ||
Sbjct 769 GCCTGCGACATCGCGAGTCAAGTCAAGGACCCTTACAGGAAACTGTTGAAGCCTGCTAGT 828
Query 831 CAGGCCGCCTTTCGTGATTGGAATG-TTGCTACAGTTTTTCCAACAGTTCACTGGAATCA 889
| | || || ||| | || |||||| || || ||| |||||||||| || || |||||||
Sbjct 829 C-GCCCACCGTTCATCATCGGAATGCTT-CTCCAGCTTTTCCAACAATTTACCGGAATCA 886
Query 890 ACGCGATTATGTTCTACGCTCCGGTTTTGTTCCAGACTGTAGGGTTTGGAAATGACGCAG 949
| |||||||||||||| || |||||||| ||||| ||||| || || |||| |||||||
Sbjct 887 ATGCGATTATGTTCTATGCACCGGTTTTATTCCAAACTGTTGGATTCGGAAGCGACGCAG 946
Query 950 CTCTGCTTTCCGCGGTTGTCACGGGAACGATCAACGTTCTCAG-CACGTTTGTCGGGATT 1008
|||| || || |||||| |||| ||||| ||||| |||||| | ||| || || ||||||
Sbjct 947 CTCTTCTCTCTGCGGTTATCACCGGAACAATCAATGTTCTC-GCCACATTCGTTGGGATT 1005
Query 1009 TTCCTTGTCGACAAAACTGGCCGAAGATTTC-TATTGCTCCAATCTTCCGTTCACATGCT 1067
| ||| || |||||||| ||| | ||||| | | || |||||||||||||||||||||||
Sbjct 1006 TACCTCGTTGACAAAACCGGCAGGAGATTCCTTCTT-CTCCAATCTTCCGTTCACATGCT 1064
Query 1068 CATATGCCAGTTGGTCATTGGAATCATCCTAGCCAAGGACCTAGACGTGACGGGTACGCT 1127
||| ||||||||| ||||||||||||||||||| |||||| | | | ||||| || ||
Sbjct 1065 CATCTGCCAGTTGATCATTGGAATCATCCTAGCAAAGGACTTGGGTATAACGGGAACACT 1124
Query 1128 -AGCACGGCCACAAGCCCTAGTAGTGGTGATCTTCGTGTGTGTTTACGTGATGGG-TTTC 1185
| | |||||||||||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct 1125 CGGGA-GGCCACAAGCCCTAGTAGTGGTGATCTTTGTGTGCGTTTACGTGATGGGCTTT- 1182
Query 1186 GCTTGGTCATGGGG-CCCTCTAGGATGGCTAATCCCTAGTGAGACCTTCCC-CTTGGAGA 1243
|| ||||||||||| |||| ||||||||||||| ||||| ||||| || || || | | |
Sbjct 1183 GCATGGTCATGGGGACCCT-TAGGATGGCTAATTCCTAGCGAGACGTTTCCTCTAGAA-A 1240
Query 1244 CTCGAA-CGGAAGGGTTCGCA-TTGGCCGTGTCTTGCAACATGTTCTTCACGTTCGTGAT 1301
| || | || | || ||||| ||| | || || ||||||||||||||||| ||||| ||
Sbjct 1241 CCCGTAGCGCA-GGATTCGCTGTTG-CAGTCTCGTGCAACATGTTCTTCACTTTCGTAAT 1298
Query 1302 CGCTCAGGCCTTCCTATCGATGCTTTGCGCGATGA-AGTCAGGGATATTCTTCTTCTTCA 1360
|||||| |||||||||||||||||||||| ||||| | || || ||||||||||||||||
Sbjct 1299 CGCTCAAGCCTTCCTATCGATGCTTTGCGGGATGAGA-TCTGGAATATTCTTCTTCTTCA 1357
Query 1361 GTGGTTGGATCGTTGTGATGGGACT-TTT-CGCTTTGTTCTTCGTGCCGGAAACGAAAGG 1418
| | ||||||| ||||||||||||| ||| || ||| |||||| | || || || |||||
Sbjct 1358 GCGCTTGGATCATTGTGATGGGACTGTTTGCG-TTT-TTCTTCATACCAGAGACAAAAGG 1415
Query 1419 AGTCTCCATTGATGACATGAGAGATAGTGTGTGGAAGCTACATTGGTACTGGAAGAGGTT 1478
| || ||||||||||||||||||| ||||||||||||| |||||||| |||||| ||||
Sbjct 1416 AATCGCCATTGATGACATGAGAGAGAGTGTGTGGAAGCCACATTGGTTCTGGAAAAGGTA 1475
Query 1479 TATGCT-C--GAGGAAGATGAGCATGACGTTGAGAAGAGAACTGATTGA 1524
|||||| | ||||| || | ||||||||||||||||||| || ||||
Sbjct 1476 TATGCTTCCAGAGGACGACCACCATGACGTTGAGAAGAGAAATGCTTGA 1524
> Ahg489474 jgi|Araly1|489474|fgenesh2_kg.6__2608__AT5G26340.1
Length=1868
Score = 110 bits (59), Expect = 5e-23
Identities = 112/136 (82%), Gaps = 10/136 (7%)
Strand=Plus/Plus
Query 860 TACAGTTTTTCCAACAGT-TCACTGGAATCAACGCGATTATGTTCTACGCTCCGGTTTTG 918
||||| |||||||||| | | |||||||||||||||||||||||||||||||| ||| ||
Sbjct 924 TACAGATTTTCCAACAATGT-ACTGGAATCAACGCGATTATGTTCTACGCTCCTGTTCTG 982
Query 919 TTCCAGACTGTAGGGTTTGGAAATGACGCAGCTCTGCTTT-C-C-GCGGTTGTCACGGGA 975
||| | || ||||||||||| |||||||| ||| |||| | | || || ||||| |||
Sbjct 983 TTCAACACAGTAGGGTTTGGCAATGACGCT--TCT-CTTTACTCTGCAGTGGTCACCGGA 1039
Query 976 AC-GATCAACGTTCTC 990
| | ||||||| |||
Sbjct 1040 GCAG-TCAACGTCCTC 1054
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61630016410
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5