BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G26270.1

Length=918
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg351855 jgi|Araly1|351855|fgenesh1_pg.C_scaffold_6002448           110    2e-23
  Ahg947496 jgi|Araly1|947496|scaffold_703725.1                       95.3    7e-19


> Ahg351855 jgi|Araly1|351855|fgenesh1_pg.C_scaffold_6002448
Length=1341

 Score =  110 bits (59),  Expect = 2e-23
 Identities = 201/263 (76%), Gaps = 36/263 (14%)
 Strand=Plus/Plus

Query  9    CGTGGCCGCCGGCGAGGACCCTCCCTTGCCAGAACCCCCTGACCCGCCTGATCCTCCCT-  67
            ||| ||||||| ||| |||||||||||||||||||||||||||||||| |||||||| | 
Sbjct  9    CGTTGCCGCCGTCGACGACCCTCCCTTGCCAGAACCCCCTGACCCGCCCGATCCTCC-TA  67

Query  68   -CCATC--TTC-GC--C---CAAACCTTCATAC-CCGATCCA-C-C---T-TCTACTTC-  110
             |||||  ||| ||  |   | || || ||| | || ||||| | |   | ||| || | 
Sbjct  68   ACCATCCCTTCTGCTTCGTTCTAATCTCCAT-CTCCAATCCATCACCCATCTCTCCTCCC  126

Query  111  TTCT-CTC-TTTCCACCTTC-A-T--C---G-AGTCTAGATCTAGATCTATG-TTCTACC  159
            || | | | ||||||||||| | |  |   | | || || ||||||||| || |||| ||
Sbjct  127  TT-TACACATTTCCACCTTCCACTTTCTTTGGA-TCCAGTTCTAGATCT-TGGTTCTTCC  183

Query  160  GTTTCTTCCTATGGTG-TTACTCCTTTCGtttttttGCGATTCTTTACTGCTGTGTGCAG  218
            | |||||| | ||||| || | ||||||| || ||||||| |||||||||||||||||||
Sbjct  184  GCTTCTTCTTTTGGTGGTTCC-CCTTTCGCTTCTTTGCGAATCTTTACTGCTGTGTGCAG  242

Query  219  TCCCTTCTATCAGATCTGTACCC  241
            |||||  | ||||| |||| |||
Sbjct  243  TCCCTGGTTTCAGACCTGTTCCC  265


> Ahg947496 jgi|Araly1|947496|scaffold_703725.1
Length=625

 Score = 95.3 bits (51),  Expect = 7e-19
 Identities = 100/123 (81%), Gaps = 6/123 (5%)
 Strand=Plus/Plus

Query  577  TTATCGGAGCT-AGTTATCTTCCCAAAGTTCCCTCCTCAGTG-G-AGTGGTTTGGATGTC  633
            |||| |||| | | || |||||||||| |||||| ||  ||| | |||||||||||||| 
Sbjct  210  TTAT-GGAGTTCATTTCTCTTCCCAAAATTCCCT-CT-TGTGAGAAGTGGTTTGGATGTT  266

Query  634  CAAGAGTCGTCGGTATTGCAAGGATCTTCCTCCCGATTGATGTTCTTCTCTGCATTTGAT  693
            |||   ||| |  ||||||||||||||||||||||||||||| ||| ||| || |||| |
Sbjct  267  CAATCTTCGCCAATATTGCAAGGATCTTCCTCCCGATTGATGGTCTCCTCGGCCTTTGTT  326

Query  694  GCA  696
            |||
Sbjct  327  GCA  329



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34043764881


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5