BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G26310.1
Length=1701
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496932 jgi|Araly1|496932|fgenesh2_kg.8__2748__AT5G26310.1 2331 0.0
> Ahg496932 jgi|Araly1|496932|fgenesh2_kg.8__2748__AT5G26310.1
Length=1617
Score = 2331 bits (1262), Expect = 0.0
Identities = 1503/1621 (93%), Gaps = 9/1621 (1%)
Strand=Plus/Plus
Query 41 AAGAAGAAGTAGTGATGCATATCACAAAACCACACGCCGCCATGTTTTCCAGTCCCGGAA 100
|||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 1 AAGAAGCAGTAGTGATGCATATCGCAAAACCACACGCCGCCATGTTTTCCAGCCCCGGAA 60
Query 101 TGGGCCATGTCCTCCCGGTGATCGAGCTAGCTAAGCGTCTCTCCGCTAACCACGGCTTCC 160
||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 61 TGGGCCATGTCATCCCGGTGATCGAGCTCGCTAAGCGTCTCTCCGCTAATCACGGCTTCC 120
Query 161 ACGTCACCGTCTTCGTCCTTGAAACTGACGCAGCCTCCGTTCAGTCCAAGCTCCTTAACT 220
||||||||||||||||||| ||||| ||||||||||||| |||||||||| |||| ||||
Sbjct 121 ACGTCACCGTCTTCGTCCTCGAAACCGACGCAGCCTCCGCTCAGTCCAAGTTCCTAAACT 180
Query 221 CAACCGGTGTTGACATCGTCAACCTTCCATCGCCCGACATTTCTGGCTTGGTAGACCCCA 280
||||||| || ||||||||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct 181 CAACCGGCGTCGACATCGTCAACCTTCCATCGCCGGACATTTCTGGTTTGGTGGACCCCG 240
Query 281 ACGCCCATGTGGTGACCAAGATCGGAGTCATTATGCGTGAAGCTGTTCCAACCCTCCGAT 340
||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 241 ACGACCATGTGGTGACCAAGATCGGAGTCATTATGCGTGAAGCAGTTCCAGCCCTCCGAT 300
Query 341 CCAAGATCG-TTGCCATGCATCAAAACCCAACGGCTCTGATCATTGACTTGTTTGGCACA 399
||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 301 CCAAGATCGCTT-CCATGCATCAAAAGCCAACGGCTCTGATCATTGACTTGTTTGGCACA 359
Query 400 GATGCGTTATGTCTTGCAGCGGAGTTAAACATGTTGACTTATGTCTTTATCGCTTCCAAC 459
|||||||||||||| | | | || |||||||||||||||||| | || || |||||||||
Sbjct 360 GATGCGTTATGTCTCGGAACAGAATTAAACATGTTGACTTATTTGTTCATTGCTTCCAAC 419
Query 460 GCGCGTTATCTCGGAGTTTCGATATATTATCCAACTTTGGACGAAGTTATCAAAGAAGAG 519
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 420 GCGCGTTATCTCGGAGTTTCGATATATTATCCAACTTTGGACAAAGATATCAAAGAAGAG 479
Query 520 CACACAGTGCAACGAAAACCGCTCACTATACCGGGGTGTGAACCGGTTAGATTTGAAGAT 579
||||| |||||| ||||||||||| || |||||||||| |||||||| | ||| ||||||
Sbjct 480 CACACCGTGCAAAGAAAACCGCTCGCTGTACCGGGGTGCGAACCGGTGAAATTCGAAGAT 539
Query 580 ATTATGGATGCATATCTGGTTCCGGACGAACCGGTGTACCACGATTTGGTTCGTCACTGT 639
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 540 ACTATGGATGCATATCTGGTTCCGGACGAACCGGTGTACCGGGATTTGGTTCGTCACTGT 599
Query 640 CTGGCCTACCCAAAAGCGGATGGAATCTTGGTGAATACATGGGAAGAGATGGAGCCCAAA 699
||||| |||||||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct 600 CTGGCTTACCCAAAGGCTGATGGAATTTTGGTGAATACATGGGAAGAGATGGAGCCCAAA 659
Query 700 TCATTAAAGTCCCTTCAAGACCCGAAA-CTTTTGGGCCGGGTCGCTCGTGTACCGGTTTA 758
||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 660 TCATTGAAGTCCCTTCAAGACCC-AAAGCTTTTGGGCCGGGTCGCTCGTGTACCGGTTTA 718
Query 759 TCCGGTTGGTCCGTTATGCAGACCGATACAATCATCCACGACCGATCACCCGGTTTTTGA 818
|||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 719 TCCGGTCGGTCCGTTATGCAGACCAATACAATCATCCAAGACCGATCACCCGGTTTTTGA 778
Query 819 TTGGTTAAACAAACAACCAAACGAGTCGGTTCTCTACATTTCCTTCGGGAGTGGTGGTTC 878
|||| ||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 779 TTGGCTAAACGAACAACCAAACGAGTCCGTTCTCTACATCTCCTTCGGGAGTGGTGGTTC 838
Query 879 TCTAACGGCTCAACAGTTAACCGAATTGGCGTGGGGGCTCGAGGAGAGCCAGCAACGGTT 938
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 839 TCTAACGGCTAAACAGTTAACCGAATTGGCGTGGGGGCTCGAGCAGAGCCAGCAACGGTT 898
Query 939 TATATGGGTGGTTCGACCGCCCGTTGACGGCTCGTCTTGCAGTGATTATTTCTCGGCTAA 998
| |||||||||||||| || || |||||||||||||||||||| ||||||||||||||
Sbjct 899 CGTGTGGGTGGTTCGACCACCGGTCGACGGCTCGTCTTGCAGTGAGTATTTCTCGGCTAA 958
Query 999 AGGCGGTGTAACCAAAGACAACACGCCAGAGTATCTACCAGAAGGGTTCGTGACTCGTAC 1058
||||| | ||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 959 CGGCGGAGGAACCAAAGACAACACACCAGAGTATCTACCGGAAGGGTTCGTGACTCGTAC 1018
Query 1059 TTGCGATAGAGGTTTCATGATCCCATCATGGGCACCGCAAGCTGAAATCCTAGCCCATCA 1118
||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1019 TTGCGATAGAGGTTTTGTGATCCCATCATGGGCACCGCAAGCTGAAATCCTGGCCCATCA 1078
Query 1119 GGCCGTTGGTGGGTTTTTAACACATTGTGGTTGGAGCTCGACGTTGGAAAGCGTCCTTTG 1178
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
Sbjct 1079 GGCCGTTGGTGGGTTTTTGACCCATTGTGGTTGGAGCTCGACGTTGGAAAGCGTCCTTGG 1138
Query 1179 CGGCGTTCCAATGATAGCGTGGCCGCTTTTCGCCGAGCAGAATATGAACGCGGCGTTGCT 1238
||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1139 CGGCGTTCCGATGATCGCGTGGCCGCTTTTCGCCGAGCAGAATATGAATGCGGCGTTGCT 1198
Query 1239 TAGCGATGAACTGGGAATCTCTGTTAGAGTGGATGATCCAAAGGAGGCGATTTCTAGGTC 1298
|||||| |||||||||||| | || |||||||||||||||||||||||||||||||||||
Sbjct 1199 TAGCGACGAACTGGGAATCGCCGTCAGAGTGGATGATCCAAAGGAGGCGATTTCTAGGTC 1258
Query 1299 GAAGATTGAGGCGATGGTGAGGAAGGTTATGGCTGAGGACGAAGGTGAAGAGATGAGAAG 1358
||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||
Sbjct 1259 GAAGATTGAGGCGATGGTGAGGAAGGTTATGGCTGAGAAGGAAGGTGAGGAGATGAGAAG 1318
Query 1359 GAAAGTGAAGAAGTTGAGAGACACGGCGGAGATGTCACTTAGTATTCACGGTGGTGGTTC 1418
||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||
Sbjct 1319 GAAAGTGAAGAAGTTGAGAGACACGGCGGAGATGTCACTGAGCATTGACGGTGGTGGTTC 1378
Query 1419 GGCGCATGAGTCGCTTTGCAGAGTCACGAAGGAGTGTCAACGGTTTTTGGAATGTGTCGG 1478
|||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||| |
Sbjct 1379 GGCGCACGAGTCGCTTTGCAGAGTCACGAAGGAATGTCAACGGTTTTTGGAACGTGTCAG 1438
Query 1479 GGACTTGGGACGTGGTGCTTAGTAATGGTTACTGTTTTCTAGCTCTTTAGTGGTTGAATT 1538
||| |||| ||||||||||||| |||| |||| ||||| || ||||| |||| ||||||
Sbjct 1439 GGAATTGGCACGTGGTGCTTAGAAATGATTACCGTTTTGTACCTCTTG-GTGGATGAATT 1497
Query 1539 TACTTGTCGTTTCTTAAT--GTGTATTTTTCATTGTAATAGAATAATCGATGTTTTGTAA 1596
|| |||||||||||||| ||||||||| |||||||||||||||||||||||| |||||
Sbjct 1498 -ACGTGTCGTTTCTTAATTAGTGTATTTTCCATTGTAATAGAATAATCGATGTTGTGTAA 1556
Query 1597 TATATTAATGTATTTGATATTTCTCAACTAATTT-CCATTGTAATATTGAATAATCGGTG 1655
|| | | |||| |||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1557 TAAAATGATGTTTTTGATATTTCTCAACTAATTTTCCAATGTAATATTGAATAATCGGTG 1616
Query 1656 T 1656
|
Sbjct 1617 T 1617
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63801160375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5