BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G26330.1
Length=710
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489473 jgi|Araly1|489473|fgenesh2_kg.6__2607__AT5G26330.1 918 0.0
> Ahg489473 jgi|Araly1|489473|fgenesh2_kg.6__2607__AT5G26330.1
Length=674
Score = 918 bits (497), Expect = 0.0
Identities = 604/655 (92%), Gaps = 9/655 (1%)
Strand=Plus/Plus
Query 5 TAAAGGAGAAAACCTTGTGGGGCTCTTTACCAAAGAAGAAGAAGAAGCGTGTGTCAGAGA 64
||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||
Sbjct 1 TAAAGGAGAAAACCTTGTGGGGCTCTTCACCAAAGAAGAAGAAGAAGAGTGTGTGAGAGA 60
Query 65 -A-AGTTTGTTGACCGATGGCAGCCATTATAGTGGCGGCTTTAGCGTGTATCGTGGTGAT 122
| |||| |||||| |||||| || | |||||||||||||| |||||||| ||||||||
Sbjct 61 GAGAGTTAGTTGACTGATGGCGGCGAGGATAGTGGCGGCTTTGGCGTGTATGGTGGTGAT 120
Query 123 GCTACGA-CTGAGTGAAGCGGCCGTGTACAAAGTCGGCGACTCAGCAGGATGGACAACCA 181
||||| | |||||||||||| | ||||||||||| || ||||||||||| ||||||||||
Sbjct 121 GCTAC-AGCTGAGTGAAGCGACGGTGTACAAAGTTGGTGACTCAGCAGGCTGGACAACCA 179
Query 182 TAGCCAACGTAGACTACAAGCTATGGGCTTCTACCAAAACTTTCCACATTGGTGATACTG 241
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TAGCTAACGTAGACTACAAGCTATGGGCTTCTACCAAAACTTTCCACATTGGTGATACTG 239
Query 242 TCTTGTTCGAATACAACCCACAATTCCACAACGTAATGAGAGTGACGCACCCAATGTATA 301
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 240 TCTTGTTCGAATACAACCCACAATTCCACAACGTAATGAGAGTGACGCACCCAATGTACA 299
Query 302 GAAGTTGCAACACCTCAAAGCCAATCTCTACTTTCACCACCGGCAACGACTCAATCACAC 361
|||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct 300 GAAGTTGCAACACCTCAAAGCCAATCTCCACGTTCACTACCGGCAACGACTCAATCACAC 359
Query 362 TCACCAACCACGGCCACCATTTCTTCTTTTGCGGCGTTCCTGGCCATTGCCTCGCCGGTC 421
|||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||
Sbjct 360 TCACCAACCACGGCCACCATTTCTTCTTTTGCGGCGTTCCCGGCCATTGTCTTGCCGGTC 419
Query 422 AGAAGCTCGACCTTCA-CGtccttctccctgcctcctccacgccactctctgatccacca 480
||||||| ||||| || |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 420 AGAAGCTTGACCT-CAACGTCCTCCTCCCTGCCTCCTCCACGCCACTCTCTGATCCACCA 478
Query 481 acttcctcctcctcttctcctccctcGACTACTATTCCTGCAGCCGGAGTCCCTGGCCCT 540
||||||||||||||| | | ||| ||||||||||||||||||||||||||||| ||||||
Sbjct 479 ACTTCCTCCTCCTCT-C-C-TCCATCGACTACTATTCCTGCAGCCGGAGTCCCCGGCCCT 535
Query 541 TCTCCTAGCCTTGCTGCTTCTCTCCCGAGTATGGTGACGGCTCAAATCGTGGCCGTGGTG 600
||||||||||||||||||||||| |||| || || |||||||||||||| ||||||
Sbjct 536 TCTCCTAGCCTTGCTGCTTCTCTATCGAGCGTGACAACAGCTCAAATCGTGGCTGTGGTG 595
Query 601 ACTCTCCTAGTCTCTTTGGCCTTTACAAATTTTGCTTCTTAACTAGGATTACATA 655
||||||||||||||||||||||||| |||||||||||||| |||||||| |||
Sbjct 596 GTTCTCCTAGTCTCTTTGGCCTTTACAGATTTTGCTTCTTAATTAGGATTATATA 650
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26114198145
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5