BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G26594.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value Ahg894564 jgi|Araly1|894564|Al_scaffold_0006_2560 699 0.0 > Ahg894564 jgi|Araly1|894564|Al_scaffold_0006_2560 Length=420 Score = 699 bits (378), Expect = 0.0 Identities = 406/420 (97%), Gaps = 0/420 (0%) Strand=Plus/Plus Query 1 ATGACGAGAGATCAAGTAGCTGAAGAACTTCCAAATTTGGCAGAGTCGAAGTTAACAGCT 60 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGACGAGAGATCAAATAGCTGAAGAACTTCCAAATTTGGCAGAGTCGAAGTTAACAGCT 60 Query 61 TTGGTCGTCGATGACAGTTTCGTAAACCAAACTATACATCAGAAGCTGTTGAATCGTCTA 120 |||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||| Sbjct 61 TTGGTCGTCGATGACAGTTTCGTAAACCAAACCATACATCAGAAACTTTTGAATCGTCTA 120 Query 121 GGGATTAAAAACGACGTCGTCACAAACGGAAAAGAAGCCGTCGACGTTTATTGTTCCGGC 180 |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 121 GGGATTGAAAACGACGTCGTTACAAACGGAAAAGAAGCCGTCGACGTTTATTGTTCCGGC 180 Query 181 GGTAACTATGATCTTATTCTTATGGACATGGACATGCCCATCATGAACGGTATTCAGGCA 240 | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 181 AGAAACTATGATCTTATTCTTATGGACATGGACATGCCAATCATGAACGGTATTCAGGCA 240 Query 241 ACAAAGAGACTAAGGGAGATGGGAATAGAGAGCAAGATAGCAGGAGTAACAACACGAGCT 300 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 241 ACAAAGAGACTAAGGGAGATGGGGATAGAGAGCAAGATAGCAGGAGTAACAACTCGAGCT 300 Query 301 AACGAAGGAGAGAAGAAAGAGTTTATGGAAGCTGGCCTTAATGATTTTCAAGAGAAACCT 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 AACGAAGGAGAGAAGAAAGAGTTTATGGAAGCTGGCCTTAATGATTTTCAAGAGAAACCT 360 Query 361 CTTACCATCTCTAAGCTTCTCTCTATTCTTCATAAACTTAATTTCTACGTCCAAACCTAA 420 ||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||| Sbjct 361 CTTACCATCTCTAAGCTTCTCTCTATTCTTCATAAACTTGATTTTTATGTCCAAACCTAA 420 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 15109613244 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5