BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G26594.1

Length=420
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg894564 jgi|Araly1|894564|Al_scaffold_0006_2560                    699    0.0  


> Ahg894564 jgi|Araly1|894564|Al_scaffold_0006_2560
Length=420

 Score =  699 bits (378),  Expect = 0.0
 Identities = 406/420 (97%), Gaps = 0/420 (0%)
 Strand=Plus/Plus

Query  1    ATGACGAGAGATCAAGTAGCTGAAGAACTTCCAAATTTGGCAGAGTCGAAGTTAACAGCT  60
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGACGAGAGATCAAATAGCTGAAGAACTTCCAAATTTGGCAGAGTCGAAGTTAACAGCT  60

Query  61   TTGGTCGTCGATGACAGTTTCGTAAACCAAACTATACATCAGAAGCTGTTGAATCGTCTA  120
            |||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||
Sbjct  61   TTGGTCGTCGATGACAGTTTCGTAAACCAAACCATACATCAGAAACTTTTGAATCGTCTA  120

Query  121  GGGATTAAAAACGACGTCGTCACAAACGGAAAAGAAGCCGTCGACGTTTATTGTTCCGGC  180
            |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  121  GGGATTGAAAACGACGTCGTTACAAACGGAAAAGAAGCCGTCGACGTTTATTGTTCCGGC  180

Query  181  GGTAACTATGATCTTATTCTTATGGACATGGACATGCCCATCATGAACGGTATTCAGGCA  240
             | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  181  AGAAACTATGATCTTATTCTTATGGACATGGACATGCCAATCATGAACGGTATTCAGGCA  240

Query  241  ACAAAGAGACTAAGGGAGATGGGAATAGAGAGCAAGATAGCAGGAGTAACAACACGAGCT  300
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct  241  ACAAAGAGACTAAGGGAGATGGGGATAGAGAGCAAGATAGCAGGAGTAACAACTCGAGCT  300

Query  301  AACGAAGGAGAGAAGAAAGAGTTTATGGAAGCTGGCCTTAATGATTTTCAAGAGAAACCT  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  AACGAAGGAGAGAAGAAAGAGTTTATGGAAGCTGGCCTTAATGATTTTCAAGAGAAACCT  360

Query  361  CTTACCATCTCTAAGCTTCTCTCTATTCTTCATAAACTTAATTTCTACGTCCAAACCTAA  420
            ||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||
Sbjct  361  CTTACCATCTCTAAGCTTCTCTCTATTCTTCATAAACTTGATTTTTATGTCCAAACCTAA  420



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15109613244


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5