BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G26600.2
Length=2009
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489502 jgi|Araly1|489502|fgenesh2_kg.6__2636__AT5G26600.2 2191 0.0
> Ahg489502 jgi|Araly1|489502|fgenesh2_kg.6__2636__AT5G26600.2
Length=1895
Score = 2191 bits (1186), Expect = 0.0
Identities = 1352/1430 (95%), Gaps = 19/1430 (1%)
Strand=Plus/Plus
Query 145 CCACCAACGGAACCGTCG-A--ATCATCGGTTTCCGATTTCGTCAAACGTCCCAAAATCT 201
|||||||||||| ||||| | ||||||||||||||||||||||||||| || |||||||
Sbjct 97 CCACCAACGGAAACGTCGAATCATCATCGGTTTCCGATTTCGTCAAACGACCGAAAATCT 156
Query 202 CTCATCCGAATTACATATCAAGTTCCGAGATCGAATCAGAGTTTTCTCATCACGATCCAG 261
||| || |||||||||||| ||||||||||||| ||||||||||||||||| |||||||
Sbjct 157 CTCCTCAGAATTACATATCTTGTTCCGAGATCGAGTCAGAGTTTTCTCATCATGATCCAG 216
Query 262 -ATTTCGCAAGAATCAACAACGGTAGTTTTGGTTGTTGTCCGTCATCAATCCTAGCTTTA 320
|||| || ||||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct 217 AATTT-GCTAGAATCAACAACGGTAGCTTTGGTTGTTGTCCATCATCAATCCTCGCTTTA 275
Query 321 CAACGAGATTGGCAGCTCCGGTTCCTTCGTCAACCGGATCGATTCTATTTCGACGAACTC 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 276 CAACGAGATTGGCAGCTCCGGTTCCTTCGTCAACCGGATCGATTCTATTTCGACGAACTC 335
Query 381 AAACCAAAAATCTCCGATTCTAGATCTGTAATCAAACGGTTAATAAACGCCGAGCATGAC 440
||||| |||||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct 336 AAACCGAAAATCTCCGATTCTAGATCTGTAATCAAACGGTTAATCAACGCCGATCACGAC 395
Query 441 GATGAAGTCTCGATCGTCGATAACGCAACAACCGCAGCTGCAATCGTTCTTCAACAAACC 500
||||||||||| ||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct 396 GATGAAGTCTCAATCGTTGATAACGCCACAACTGCAGCTGCAATCGTTCTTCAACAAACC 455
Query 501 GCTTGGGCTTTTCGTGAAGGTCGGTTCGATAAAGGCGACGCGGTGGTTATGCTTCATTAC 560
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 456 GCTTGGGCTTTTCGTGAAGGAAGGTTCGATAAAGGCGACGCGGTGGTTATGCTTCATTAC 515
Query 561 GCTTATGGCTCTGTGAAGAAATCTGTTGAAGCGTATGTTACACGCTCCGGTGGACACGTC 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 516 GCTTATGGCTCTGTGAAGAAATCTGTTGAAGCGTATGTTACACGCTCCGGTGGACACGTC 575
Query 621 ACCGAGGTACAGTTACCTTTTCCGGTTATTTCGGCGGATGAGATTATTGACCGGTTTAGG 680
| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 576 ATCGAGGTACAGTTACCTTTTCCGGTTATCTCGGCGGATGAAATTATTGACCGGTTTAGG 635
Query 681 ATTGGTTTAGAGTCTGGTAAAGCGAATGGTAGGAGAGTTAGGTTAGCTTTGATTGATCAT 740
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 636 ATTGGTTTAGAGTCGGGTAAGGCGAATGGTAGGAGAGTTAGGTTAGCTTTGATTGATCAT 695
Query 741 GTGACTTCTATGCCAAGTGTTGTGATTCCTATTAAAGAGCTTGTGAAGATTTGTAGAAGA 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 696 GTGACTTCTATGCCAAGTGTTGTGATTCCTATTAAAGAGCTTGTGAAGATTTGTAGAAGA 755
Query 801 GAAGGTGTTGACCAAGTTTTTGTTGATGCTGCTCATGGGATAGGTTGTGTTGATGTTGAT 860
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 756 GAAGGTGTTGACCAAGTTTTTGTTGATGCTGCTCATGGGATTGGTTGTGTTGATGTTGAT 815
Query 861 ATGAAGGAGATTGGTGCTGATTTCTATACTAGTAATCTTCATAAGTGGTTTTTCGCACCG 920
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 816 ATGAAGGAGATTGGTGCTGATTTCTATACGAGTAATCTTCATAAGTGGTTTTTCGCACCG 875
Query 921 CCTTCTGTTGCTTTCTTGTATTGTAGGAAATCGAGTAATGGTGGTG-T--TG---CGGAT 974
|||||||||||||||||||||||||||||||||||||||||||||| | || |||||
Sbjct 876 CCTTCTGTTGCTTTCTTGTATTGTAGGAAATCGAGTAATGGTGGTGGTGGTGTTGCGGAT 935
Query 975 TTGCATCATCCCGTTGTTTCGAATGAGTATGGGAACGGTTTGGCGGTTGAGAGTTCGTGG 1034
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 936 TTGCATCATCCTGTTGTGTCGAATGAGTATGGGAACGGTTTGGCGGTTGAGAGTTCTTGG 995
Query 1035 GTTGGAACTAGAGATTATAGTGCTCAGTTGGTGGTTCCTTCGATATTGGAGTTTGTAAAT 1094
||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 996 GTTGGAACTCGAGATTATAGTGCTCAGTTGGTGGTTCCTTCGATTTTGGAGTTTGTGAAT 1055
Query 1095 CGGTTTGAAGGCGGGATTGATGGTATTAAGAAGAGGAATCATGAGTCTGTTGTTGAGATG 1154
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1056 CGGTTTGAAGGCGGGATTGATGGTATTAAGAAGAGGAATCATGAGTCTGTGGTTGAGATG 1115
Query 1155 GGTCAAATGTTGGTTAAGTCTTGGGGGACTCAGCTCGGTTGTCCCCCTGAGATGTGTGCG 1214
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1116 GGTCATATGTTGGTTAAGTCTTGGGGGACTCAGCTCGGTTGTCCGCCTGAGATGTGCGCG 1175
Query 1215 AGTATGATCATGGTTGGGTTGCCAGTGTGTTTAGGAGTGTCGAGTGAGTCGGATGTTTTG 1274
|||||||||||||| |||||||| | ||||||||||||||||||||| ||||||||||||
Sbjct 1176 AGTATGATCATGGTCGGGTTGCCGGCGTGTTTAGGAGTGTCGAGTGATTCGGATGTTTTG 1235
Query 1275 AAGCTTAGAACGTTTTTAAGAGAAAAGTTCAGAATTGAAATCCCAATCTACTTTAGGCCA 1334
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1236 AAGCTTAGAACGTTTTTGAGAGAAAAGTTCAGAATTGAAATCCCAATCTACTTTAGGCCA 1295
Query 1335 CCAGGGGATGGAGAGATTGATCCGATCACGGGATATGTGCGTATTTCTTTTCAAGTTTAC 1394
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1296 CCTGGGGATGGAGAGATTGATCCGATCACGGGATATGTGCGTATTTCTTTTCAAGTTTAC 1355
Query 1395 AACAAACCTGAGGATTATCATAGGCTCAGGGACGCAATAAACGGGCTTGTTAGAGATGGG 1454
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1356 AACAAACCTGAGGATTATCATAGGCTCAGGGACGCAATAAACGAACTTGTGAGAGATGGG 1415
Query 1455 TTCAAATGCACGTCTCTATCTTGTTGAATAAGGGCATAAAGCTTTTCAGGCGAATGAATC 1514
|||| |||| | ||||||||| ||||| || ||| ||||||||| ||||||||||||
Sbjct 1416 TTCAGATGCGCATCTCTATCTAGTTGA----GG-CATCAAGCTTTTCGGGCGAATGAATC 1470
Query 1515 ATGAGAAAGAAAGTTATCATGGTTTAGGTACCATGGAGCTTTATGAGATT 1564
|| | ||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1471 ATCCTA--GAA-GTTATCATGGTTTAGGTACCATGGAGCTTCATGAGATT 1517
Score = 183 bits (99), Expect = 3e-45
Identities = 189/227 (83%), Gaps = 27/227 (12%)
Strand=Plus/Plus
Query 1599 AACTTCTTATACAGTAATGATGTATGAGAAAACTAAGTTTTCTTCTATTTCCGTTGCTCG 1658
|||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1518 AACTTCTTTTACAGTAATGATGTATGAGAAAACTAAGTTTTCTTCTGTTTCCATTG---- 1573
Query 1659 AATCGCCTGTTCAAAATTTCCCATTTACATAACCTTAGCAGGTC--TAATAAAGCACTCT 1716
||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||| |
Sbjct 1574 AATCGCCTGTTCAAAATCTCCCATTTACATAACGTTAGCAGGTCGGTAATAAAGCACTAT 1633
Query 1717 AGTCCGTGTTGTTG-TTCTCGTAATT-GGT--C----T-TTAAA--TTCTCTAATTTGTT 1765
||| ||||||||| || |||||||| ||| | | ||||| ||| ||||||||||
Sbjct 1634 AGTTAGTGTTGTTGGTT-TCGTAATTTGGTATCACGGTCTTAAAAATTCCCTAATTTGTT 1692
Query 1766 ACGACGTGTCACGTGTATGATATAATTCGCATGAAA-CTATTTGGTT 1811
||| ||| | || |||||||||||| |||||| | ||||||||
Sbjct 1693 ACG---TGT-A-GT--ATGATATAATTCAAATGAAATC-ATTTGGTT 1731
Score = 100 bits (54), Expect = 3e-20
Identities = 56/57 (98%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 47 TCAATCAATGGCGTCGTCTCTATCTCCACCGGAAGAAGCTTCGTATCACCACCGTCA 103
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 23 TCAATCAATGGCGTCGTCTCTATCTCCACCGGAAAAAGCTTCGTATCACCACCGTCA 79
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75532955835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5