BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G26610.1
Length=1106
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489499 jgi|Araly1|489499|fgenesh2_kg.6__2633__AT5G26610.2 1447 0.0
> Ahg489499 jgi|Araly1|489499|fgenesh2_kg.6__2633__AT5G26610.2
Length=1101
Score = 1447 bits (783), Expect = 0.0
Identities = 882/931 (95%), Gaps = 2/931 (0%)
Strand=Plus/Plus
Query 47 AGGTTGATTGATGTAGAGGAATGGATATTAGCCGGCGTGAAAGTAAGACGGAAGCAAGTA 106
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 172 AGGTTGATTGATATAGAGGAATGGATATTAGGCGGCGTGAAAGTAAGACGGAAGCAAGTA 231
Query 107 GTAGAGAGAAACGGATTTATGAGAAAGATCAGATGAATCAAGAGTCTTTTATTGAGGGAT 166
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 232 GCAGAGAGAAACGGATTTATGAGAAGGATCAGATGAATCAAGAGTCTTTTATTGAGGCAT 291
Query 167 TGGCAGAGGAGTTTCGGTTGCCAATTACTCATAGGGTTACTGAAAATGTTGATTTGGAGG 226
|||||||||||||||| || || |||||||||||||||||||||||||||||||||||||
Sbjct 292 TGGCAGAGGAGTTTCGATTACCGATTACTCATAGGGTTACTGAAAATGTTGATTTGGAGG 351
Query 227 ATGTGGAGCAAGCTTCGTTAGATGTAAAGATATCGTCGTCGAATGTCGGGTTTCGTCTTC 286
|||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||
Sbjct 352 ATGTGGAGCAAGCTTCTTTAGATACAAAGATATCGTCGTCGAACGTCGGGTTTCGTCTTC 411
Query 287 TTCAGAAAATGGGTTGGAAAGGAAAAGGTCTTGGAAAGCAAGAGCAAGGTATAACGGAGC 346
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 412 TTCAGAAAATGGGTTGGAAAGGAAAAGGTCTTGGAAAGCAAGAACAAGGTATAACGGAGC 471
Query 347 CTATAAAGTCCGGTATAAGAGATCGAAGACTCGGTTTAGGGAAACAAGAAGAAGATGATT 406
|||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct 472 CTATAAAGTCCGGTATCAGGGATCGAAGACTCGGTTTAGGAAAACAAGAAGAAGATGATT 531
Query 407 ATTTCACTGCAGAGGAAAACATCCAGCGGAAGAAACTTGATA-TCGAGATTGAGGAGACT 465
||||||||||||||||||| |||||||||||||||||||||| | |||||||| ||||||
Sbjct 532 ATTTCACTGCAGAGGAAAATATCCAGCGGAAGAAACTTGATAGT-GAGATTGAAGAGACT 590
Query 466 GAGGAAATCGCAAAGAAACGGGAGGTCCTAGCAGAACGTGAGCAGAAGATCCAGAGCGAT 525
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 GAGGAAATCACAAAGAAACGGGAGGTCCTAGCAGAACGTGAGCAGAAGATCCAGAGCGAT 650
Query 526 GTTAAAGAAATCCGTAAAGTCTTCTATTGTGAACTATGCAGCAAACAGTATAGAACGGTG 585
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 651 GTAAAAGAAATCCGTAAAGTCTTCTATTGTGAACTCTGCAGCAAACAGTATAGAACGGTG 710
Query 586 ATGGAGTTTGAAGGTCACTTGAGCTCATACGATCACAACCATAAGAAGCGATTCAAAGAA 645
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 ATGGAATTTGAAGGTCACTTGAGCTCATACGATCACAACCATAAGAAGCGATTCAAAGAA 770
Query 646 ATGAAAGAAATGCACGGAGCAAGCGGCCGCGATGAGAGGAAGAAACGAGAGCAGCAACGT 705
||||||||||||||||| |||||| |||||||||| |||||||| |||||||||||||||
Sbjct 771 ATGAAAGAAATGCACGGTGCAAGCAGCCGCGATGACAGGAAGAAGCGAGAGCAGCAACGT 830
Query 706 CAAGAGAGGGAGATGACTAAAATGGCTGATGCTCGCAAACAACATCAGATGCAACAGAGC 765
|| ||||||||||||||||||||||| |||||||| |||||||| ||||||||||||| |
Sbjct 831 CAGGAGAGGGAGATGACTAAAATGGCCGATGCTCGTAAACAACAGCAGATGCAACAGAAC 890
Query 766 CAGCAAGAAGTCCCAGAGAATGTCCCGGTTTCTGCACCGGCTAAGACCACGGTTGCACCA 825
||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 891 CAGCAAGAAATCCCAGAGAATGTCCCGGTTTCTACACCGGCTAAGACCATGGTTGCACCA 950
Query 826 CTTGCTGTCCAAGATCAGCGAAAAACATTGAAGTTTGGCTTCTCTTCTAAAAGCGGCATT 885
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
Sbjct 951 CTTGCTGTCCAAGATCAGCGTAAAACATTGAAGTTTGGCTTTTCTTCTAAAAGCGGCAGT 1010
Query 886 ATATCAAAGAGCCAACCCACAAGCAGCATCAAGAAGCCGAAAGTAGCAATCGCGTCCGTT 945
||||||||||||||||||| ||||||| |||||| || |||||||||||||| || |||
Sbjct 1011 ATATCAAAGAGCCAACCCATGAGCAGCACCAAGAAACCAAAAGTAGCAATCGCATCAGTT 1070
Query 946 TTCGGGAACGATAGCGACGAAGATTAACTTT 976
||||| ||||||||||||||||| ||| |||
Sbjct 1071 TTCGGCAACGATAGCGACGAAGAATAAGTTT 1101
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41210873277
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5