BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G26620.1
Length=225
Score E
Sequences producing significant alignments: (Bits) Value
Ahg894591 jgi|Araly1|894591|Al_scaffold_0006_2587 372 7e-103
Ahg928195 jgi|Araly1|928195|scaffold_300652.1 169 9e-42
> Ahg894591 jgi|Araly1|894591|Al_scaffold_0006_2587
Length=225
Score = 372 bits (201), Expect = 7e-103
Identities = 217/225 (96%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 1 ATGGGAGCAAGAAGATCGTCTCATCATAGAGTTGAAGCTGATGCATCATGGGACGACGTC 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGGAGCAAGAAGATCGTCTCATCATAGAGTTGAAGCTGATGCATCATGGGACGATGTC 60
Query 61 ATTTACACAAGAAAGGCATGGGCCAGCGACGAGGACAAGCGTTATTGGGTAGCTGAGCCA 120
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 GTTTACACAAGAAAGGCATGGGCCAGCGACGAGGACAAGCGTTATTGGGTGGCTGAGCCA 120
Query 121 GGTATTGACCGTAAAGCTTCTGCCTTCATCGCCAAGTTCCATGCCTCTCGTGTCTCTGAG 180
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGTATTGACCGTAAAGCTTCGGCCTTCATCGCCAAGTTCCATGCCTCTCGTGTCTCTGAA 180
Query 181 TCCGAACGCCAAACTCTTCCTCCTTGCCAATCCCATCATGACTAG 225
||||||||||||||||| |||||||| ||||| ||||||||||||
Sbjct 181 TCCGAACGCCAAACTCTCCCTCCTTGTCAATCTCATCATGACTAG 225
> Ahg928195 jgi|Araly1|928195|scaffold_300652.1
Length=314
Score = 169 bits (91), Expect = 9e-42
Identities = 161/194 (83%), Gaps = 8/194 (4%)
Strand=Plus/Plus
Query 24 TCATAGAGTTGAAGCT-GA-TGCATCATGGGACGACGTCATTTACACAAGAAAGGC-ATG 80
||| ||||| |||| | || || ||||||||||||||| |||||| | ||||| ||
Sbjct 92 TCACAGAGTGGAAG-TAGACGGC-TCATGGGACGACGTCGGTTACACTCGCAAGGCAAT- 148
Query 81 GGCCAGCGACGAGGACAAGCGTTATTGGGTAGCTGAGCCAGGTATTGACCGTAAAGCTTC 140
||| || || |||||||| ||||||||||| ||||| ||||| || ||||||||||||||
Sbjct 149 GGCTAGTGATGAGGACAAACGTTATTGGGTCGCTGAACCAGGCATCGACCGTAAAGCTTC 208
Query 141 TGCCTTCATCGCCAAGTTCCATGCCTCTCGTGTCTCTGAGTCCGAACGCCAAACTCT-TC 199
|||||||||||||||||| ||||| |||||||||||||||| || || || ||||| ||
Sbjct 209 TGCCTTCATCGCCAAGTTTCATGCGACTCGTGTCTCTGAGTCTGAGCGTCAGACTCTCTC 268
Query 200 CTCCTTGCCAATCC 213
||||| || ||||
Sbjct 269 -TCCTTACCGATCC 281
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 7714028722
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5