BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G26660.1
Length=1391
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489496 jgi|Araly1|489496|fgenesh2_kg.6__2630__AT5G26660.1 1949 0.0
Ahg478147 jgi|Araly1|478147|fgenesh2_kg.3__848__AT3G08500.1 95.3 1e-18
Ahg895588 jgi|Araly1|895588|Al_scaffold_0006_3584 91.6 1e-17
Ahg482173 jgi|Araly1|482173|fgenesh2_kg.4__1233__AT2G32460.2 78.7 1e-13
> Ahg489496 jgi|Araly1|489496|fgenesh2_kg.6__2630__AT5G26660.1
Length=1352
Score = 1949 bits (1055), Expect = 0.0
Identities = 1272/1371 (93%), Gaps = 37/1371 (3%)
Strand=Plus/Plus
Query 1 AATCATAGTTTCTCTCATTTTATAATAATTTTCTCCATCTTCTTCCTTCCTCTTCAAGCT 60
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
Sbjct 1 AATCATAGTTTCTCTCATTTTATAATAA--TTCTCCATCTTCTTCCTTCATCTTCAAGTT 58
Query 61 TATAGAACCTCCA-AGAACCATAAAACTCTCTCTGCAACAATCT--ATACTTTCTTCATT 117
|||||||||| || | || ||||||||||||||| ||| ||| | || || | | |
Sbjct 59 TATAGAACCTTCACA-AATCATAAAACTCTCTCT--AACTCTCTGCA-ACAATC-T-A-T 111
Query 118 ACTTTTATAAAAAATGGGAAGACATTCTTGTTGTTTTAAGCAGAAGCTAAGAAAAGGCCT 177
|| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 112 AC-TTT-CAAAAAATGGGAAGACATTCTTGTTGTTTTAAGCAGAAGCTACGAAAAGGCCT 169
Query 178 TTGGTCTCCTGAAGAAGATGAGAAACTTCTCAATTACATCACTAGACATGGTCATGGCTG 237
||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 170 TTGGTCTCCCGAGGAAGATGAGAAACTTCTCAATTATATCACTAGACATGGTCATGGCTG 229
Query 238 TTGGAGTTCTGTCCCTAAACTCGCAGGTTTGCAAAGATGTGGAAAGAGTTGTAGACTTAG 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 230 TTGGAGTTCTGTCCCTAAACTCGCAGGTTTGCAAAGATGTGGAAAGAGTTGTAGACTTAG 289
Query 298 GTGGATAAATTATTTGAGACCAGATTTAAAGAGAGGAGCTTTCTCTCAAGACGAAGAAAG 357
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 290 ATGGATAAATTATTTGAGACCAGATTTAAAGAGAGGAGCTTTCTCGCAAGACGAAGAAAG 349
Query 358 CTTGATCATTGAGCTCCATGCTGCATTAGGCAACAGATGGTCTCAAATCGCAACGCGGTT 417
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 350 CTTAATCATTGAGCTCCATGCTGCATTAGGCAACAGGTGGTCTCAAATCGCAACGCGGTT 409
Query 418 ACCGGGAAGAACAGACAACGAGATCAAAAACTTTTGGAACTCATGTCTTAAGAAGAAGCT 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 ACCGGGAAGAACAGACAACGAGATCAAAAACTTTTGGAACTCATGTCTTAAGAAGAAGCT 469
Query 478 GAGAAGAAAAGGCATTGACCCAACAACACATAAACCCTTAATAACAAACGAGCTTCAATC 537
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 470 GAGAAGAAAAGGCATTGACCCAACAACACATAAACCCCTAATAACAAGCGAGCTTCAATC 529
Query 538 TCTTAACGTCATAGATCAGAAACTGACGTCATCAGAAGTAGTAAAGTCAACGGGTTCGAT 597
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 530 TCTTAACGTCATAGATCAGAAACTGACGTCATCAGAATTAGTAAAGTCAACGGGTTCGAT 589
Query 598 AAACAACCTACATGATCAGTCAATGGTCGTCTCATCGCAACAAGGTCCATGGTGGTTCCC 657
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 590 AAACAACCTACATGATCAGTCAATGGTCGTCTCATCGCAACCAGGTCCATGGTGGTTCCC 649
Query 658 GGCGAATACAACTACGACTAATCAAAACTCTGCGTTTTGCTTTAGTTCAAGTAATACTAC 717
||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 650 GGCGACTACAACGACGACTAATCAAAACGCTGCGTTTTGCTTTAGTTCAAGTAATACTAC 709
Query 718 ---AACGGTTTCAGACCAGATCGTATCTTTAATCTCTTCAATGTCTACGTCATCATCTCC 774
||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||
Sbjct 710 TCCAACGGTTTCAGACCAAATCGTATCTTTACTCTCTTCAATGTCCACGTCATCATCTCC 769
Query 775 GACACCAATGACTTCAAACTTCAGTCCTGCTCCAAACAACTGGGAACAACTCAACTACTG 834
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 770 GACACCAATGACTACAAACTTCAATCCTGCTCCAAACAACTGGGAACAACTCAACTACTG 829
Query 835 CAACACAGTACCAAGTCAGAGCAACAGTATCTACAGTGCCTTCTTTGGTAATCAATACAC 894
||||||||| ||| ||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 830 CAACACAGTTCCATCTCAGACCAACAGTATCTATAGTGCCTTCTTTGGTAATCAATACAC 889
Query 895 AGAAGCTAGCCAAACCATGAACAATAATAATCC-ACT--AGTAGATCAACATC-ATCATC 950
|||||||||||||| ||||||||||| |||| ||| | ||| | | | | ||||||
Sbjct 890 AGAAGCTAGCCAAAACATGAACAATAGTAATATTACTCCATTAG-T-A-C-TGGATCATC 945
Query 951 ATCAAGACATGAAGTCATGGGCATCAGAGATTCTTCATTACACAGAACACAACCAAAGCT 1010
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 946 ATCAAGACACGAAGTCATGGGCATCAGAGATTCTTCATTACACAGAACATAACCAAAGCT 1005
Query 1011 CAGAAACTG-TTATAGAAGCAGAAGTGAAGCCAGACATTGCCAACTACTACTGGAGATCA 1069
|||||| || || ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1006 CAGAAATTGGTT-TAGAAGCAGAAGTGAAGCCAGACATTGCCAAGTACTACTGGAGATCA 1064
Query 1070 GCATCATCATCGTCGTCACCAAACCAAGAAGCTGCAACATTACTACACGATGCTAACGTG 1129
||||| || || || |||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1065 GCATCGTCCTCCTCATCACCAAACCTAGAAGCTGCAACATTACTACATGATGCTAACGTG 1124
Query 1130 GAAGTGTACGGTAAAAATCTACAAAAGCTTAATAACATGGTGTTTGATCAGAGCCTTTAG 1189
|||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||
Sbjct 1125 GAAGTGTACGGTAAAAATCTACAAAAACTTAATAGCATGGTGTTTGATCAAAGCCTTTAG 1184
Query 1190 ATTATTAACATGTGTTATAGAGAGTTTC-ATTT-TCTATTCATATTCATAGACCTGAGTT 1247
|||| | ||| |||| ||||||||||| |||| | |||||| |||||||||||||||||
Sbjct 1185 ATTA--A-CATATGTTTTAGAGAGTTTCTATTTCTATATTCACATTCATAGACCTGAGTT 1241
Query 1248 TATTGATTGATCCATACAT-T-T---GTTATGCTTGTGTGTAAAGTATGTATATGGTTTT 1302
||||||||||||||||||| | | ||| ||||||||||||||||||||||||||||||
Sbjct 1242 TATTGATTGATCCATACATATATAATGTTCTGCTTGTGTGTAAAGTATGTATATGGTTTT 1301
Query 1303 TGATTTATGTAAATTTTCTGCTCGAGTGAAtttttttGGTGCTAAGATGTA 1353
|| ||| ||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1302 TGGTTTGTGTAAATTTTCTGTTCGTGTGAATTTTTTTGGTGCTAAGATGTA 1352
> Ahg478147 jgi|Araly1|478147|fgenesh2_kg.3__848__AT3G08500.1
Length=1266
Score = 95.3 bits (51), Expect = 1e-18
Identities = 233/316 (74%), Gaps = 32/316 (10%)
Strand=Plus/Plus
Query 160 GAAGCTAAGAAAAGGCCTTTGGTCTCCTGAAGAAGATGAGAAACTTC-TCAA-TTACATC 217
||||||||||||||| |||||||| ||||| ||||| ||||| | || | || |||||
Sbjct 246 GAAGCTAAGAAAAGGACTTTGGTCGCCTGATGAAGACGAGAAGC-TCAT-AAGATACAT- 302
Query 218 ACTAGAC--ATGGTCATGGCTGTTGGAGT-TCTGTCCCTA-AACTCGCAGGT-TTGCAAA 272
| ||| |||| || || ||||||||| | | ||| || | || ||| || |
Sbjct 303 -GTTGACTAATGGACAAGGATGTTGGAGTGAC-ATTGCTAGAAAT-GCTGGTCTT-TTAC 358
Query 273 GATGTGG-AAAGAGTTGTAGACTTAGGTGGATAAATTATTTGAGACCAGAT-TTAAAGAG 330
| ||||| ||| |||||| | ||| | ||||| ||||| ||||| || ||| ||||| |
Sbjct 359 GTTGTGGTAAA-AGTTGTCGCCTTCGCTGGATCAATTACTTGAGGCCTGATCTTAAA-CG 416
Query 331 AGG-AGCTT-TCT-CTCAAGACGAAGAAAGCTTGATCATT-GAGCTCCATGC--TGCATT 384
|| ||| ||| ||||||| | || | | | ||| || | | ||| | | | ||
Sbjct 417 CGGCTCCTTCTCTCCTCAAGAAG-AG-GATC-TCATC-TTCCATTTGCATTCTATTC-TT 471
Query 385 AGGCAACAGATGGTCTCAAATCGCAACGCGG-TTACCGGGAAGAACAGACAACGAGATCA 443
|| ||||| ||||||||||| || || ||| || || || || ||||||||||||||||
Sbjct 472 -GGTAACAGGTGGTCTCAAATAGCTACTCGGCTT-CCAGGTAGGACAGACAACGAGATCA 529
Query 444 AAAACTTTTGGAACTC 459
||||||||||||||||
Sbjct 530 AAAACTTTTGGAACTC 545
> Ahg895588 jgi|Araly1|895588|Al_scaffold_0006_3584
Length=1029
Score = 91.6 bits (49), Expect = 1e-17
Identities = 252/345 (73%), Gaps = 33/345 (10%)
Strand=Plus/Plus
Query 131 ATGGGAAGA-CATTCTTGTTGTTTTAAGCAGAA--G-CT-AAGAAAAGG-CCTTTGGTCT 184
||||||||| || | |||||| ||| |||| | || ||| ||||| || ||| ||
Sbjct 1 ATGGGAAGATCA-CCATGTTGTGAGAAGAAGAATGGTCTCAAG-AAAGGACC-ATGGACT 57
Query 185 CCTGAAGAAGATGAGAAA-CTTC-TCAATTACATCACTAGACATGGTCATGGCTGTTGGA 242
||||| |||||| | ||| | || | |||| |||| || ||||||| |||| |||||
Sbjct 58 CCTGAGGAAGATCA-AAAGC-TCATTGATTATATCAATAAACATGGTTATGGAAATTGGA 115
Query 243 GTTCTGTCCCTAA-ACTCGCAGGTTTGCAAAGATGTGGAAAGAGTTGTAGACTTAGGTGG 301
| || | || || | | || || || ||||||||||| ||||||||| | || | |||
Sbjct 116 GAACTCTTCCAAAGAAT-GCTGGGTTACAAAGATGTGGTAAGAGTTGTCGTCTCCGATGG 174
Query 302 ATAAATTATTTGAGACCAGAT-TTAAAGAGAGGA-GCTT-TCTCTC-AAGACGAAGAAAG 357
| || ||| | |||||||| || ||| | ||| | || ||| || |||| |||||||
Sbjct 175 ACCAACTATCTCCGACCAGATATT-AAGCGTGGACGATTCTCTTTCGAAGAAGAAGAAA- 232
Query 358 CTTGATCATTGAGC-TC-CATGC-TGCATTAGGCAAC-AGATGGTCT-CAAATCGCAACG 412
| || ||| | | || || || | || | || ||| || |||||| | || || |
Sbjct 233 C--CATTATTCAACTTCACA-GCAT-CA-TGGGAAACAAG-TGGTCTGC-TATTGCGGCT 285
Query 413 CGGTTACCGGGAAGAACAGACAACGAGATCAAAAACTTTTGGAAC 457
|| || || |||||||||||||||||||||||||||| |||||||
Sbjct 286 CGTTTGCCAGGAAGAACAGACAACGAGATCAAAAACTATTGGAAC 330
> Ahg482173 jgi|Araly1|482173|fgenesh2_kg.4__1233__AT2G32460.2
Length=1723
Score = 78.7 bits (42), Expect = 1e-13
Identities = 111/144 (77%), Gaps = 6/144 (4%)
Strand=Plus/Plus
Query 317 CCAGATTTAAAGAGAGGAGCTTTCT-CTCAAGACGAAG-AAAGCTTGATCATTGAGCTCC 374
||| || |||||| |||| |||| | ||| || |||| |||| | ||||| ||||| |
Sbjct 285 CCAAATCTAAAGAAAGGATCTTT-TACTCCTGATGAAGAAAAG-ATCATCATCGAGCTTC 342
Query 375 ATGCTGCA-TTAGGCAACAGATGGTCTCAAATCGCAACGCGGTTACCGGGAAGAACAGAC 433
| ||| | | || |||| |||| ||| || || | | |||||||||||||||||||
Sbjct 343 ACGCT-AAGCTCGGAAACAAATGGGCTCGTATGGCTTCTCAGTTACCGGGAAGAACAGAC 401
Query 434 AACGAGATCAAAAACTTTTGGAAC 457
||||||||||| |||| |||||||
Sbjct 402 AACGAGATCAAGAACTATTGGAAC 425
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51993184425
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5