BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G26667.1
Length=948
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489481 jgi|Araly1|489481|fgenesh2_kg.6__2615__AT5G26667.2 1094 0.0
> Ahg489481 jgi|Araly1|489481|fgenesh2_kg.6__2615__AT5G26667.2
Length=1005
Score = 1094 bits (592), Expect = 0.0
Identities = 699/747 (94%), Gaps = 21/747 (3%)
Strand=Plus/Plus
Query 1 TATATGTATGTATAGGTCTCTGTGCATATTTATATCGTCTCCTCTTCTTCTTCGTC---T 57
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1 TATATGTATGTATAGGTCTCTGTGCATATTTATATCGTCTCCTCTTCTTCTTCTTCGATT 60
Query 58 CTCACTTTTCAGCGTTTCTGACCAAATTCTCTCCGTGTTTCCTTCTGCTTCAGGTGATAT 117
||||||||||| || |||||||||| | ||||||||||||||||| |||||||| ||||
Sbjct 61 CTCACTTTTCATCG--TCTGACCAAA-T-TCTCCGTGTTTCCTTCTCCTTCAGGTAATAT 116
Query 118 TTTAACAAAGTT-CTTAGTACAATGGGATCTGTTGATGCTGCTAATGGAAGTGGGAAGAA 176
||||||||| || ||| |||| |||||||||||||||||| | | || ||| |||||
Sbjct 117 TTTAACAAA-TTGCTTTGTACCATGGGATCTGTTGATGCT--TCA---AA-TGGAAAGAA 169
Query 177 ACCTACAGTTATATTTG----TTC--TTGGTGGTCCAGGAAGTGGAAAAGGTACCCAGTG 230
||| |||||||| |||| ||| | ||||| || |||||||||||||||||||||||
Sbjct 170 ACCCACAGTTATTTTTGTATTTTCAATAGGTGGACCGGGAAGTGGAAAAGGTACCCAGTG 229
Query 231 TGCTTATATTGTTGAACATTATGGTTACACACATCTGAGTGCTGGAGATCTTCTTAGAGC 290
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 230 TGCGTATATTGTTGAACATTTTGGTTACACACATCTGAGTGCTGGAGATCTTCTTAGGGC 289
Query 291 TGAGATTAAATCAGGTTCTGAAAATGGAACTATGATCCAGAATATGATTAAAGAGGGGAA 350
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 290 TGAGATTAAATCAGGTTCTGCAAATGGAACTATGATCCAGAATATGATTAAAGAGGGGAA 349
Query 351 GATTGTACCTTCTGAGGTTACTATCAAGCTTCTACAGAAAGCTATTCAGGAAAACGGGAA 410
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 350 GATTGTACCTTCTGAGGTTACCATCAAGCTTCTACAGAAAGCTATTCAGGAAAACGGAAA 409
Query 411 TGACAAGTTCCTCATTGATGGTTTCCCTCGTAATGAGGAAAACCGAGCAGCATTTGAAAA 470
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 TGACAAATTCCTCATTGATGGTTTCCCTCGTAATGAGGAAAACCGAGCAGCATTTGAAAA 469
Query 471 AGTTACTGAGATTGAACCAAAGTTTGTCTTATTCTTCGATTGTCCTGAGGAAGAGATGGA 530
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 470 AGTTACTGAGATTGAACCGAAGTTTGTCTTGTTCTTCGATTGTCCTGAGGAAGAGATGGA 529
Query 531 GAAGCGCCTGTTGGGCCGAAACCAGGGGAGAGAGGATGACAATATTGAGACTATAAGGAA 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 GAAGCGCCTGTTGGGCCGAAACCAGGGGAGAGAGGATGACAATATTGAGACTATAAGGAA 589
Query 591 GCGCTTTAAGGTGTTTCTTGAATCTAGCTTACCAGTGATTCATTACTACGAAGCTAAGGG 650
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 590 GCGCTTTAAGGTGTTTCTTGAATCTAGCTTACCAGTGATTCAGTACTATGAAGCTAAGGG 649
Query 651 GAAAGTTAGGAAGATTAATGCTGCAAAGCCCATTGAAGCTGTCTTCGAGGAGGTGAAGGC 710
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 650 GAAAGTTAGGAAGATTAATGCCGCAAAGCCCATTGAAGCTGTATTCGAGGAGGTGAAGGC 709
Query 711 AATTTTTTCTCCTGAAGCTGAGAAGGT 737
||||||||||||||||| |||||||||
Sbjct 710 AATTTTTTCTCCTGAAGATGAGAAGGT 736
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35187452391
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5