BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G26670.1
Length=1596
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489494 jgi|Araly1|489494|fgenesh2_kg.6__2628__AT5G26670.1 2167 0.0
> Ahg489494 jgi|Araly1|489494|fgenesh2_kg.6__2628__AT5G26670.1
Length=1459
Score = 2167 bits (1173), Expect = 0.0
Identities = 1350/1434 (94%), Gaps = 18/1434 (1%)
Strand=Plus/Plus
Query 5 CTCTTGCCTCTGtc-tctttcttcttcttcttcttc-ttctCATTAAAAGCTGAACACAA 62
||| || |||| || || |||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 CTC-TGTCTCTTTCTTC-TTCTTCTTCTTCTTCTTCTTTCTCATTAAAAGCTGAACACAA 58
Query 63 AGATCTATTCTTTCACTAACACATTACCAGTTTCTGCATTTGTATTATATCC--TTTTCT 120
||||| ||||||||||||||||||| ||||||||||||||||| |||||||| ||||||
Sbjct 59 AGATCAATTCTTTCACTAACACATTGCCAGTTTCTGCATTTGTTTTATATCCTTTTTTCT 118
Query 121 AAAACTTTTAACCATTCTTTCTCCATTCCCAGTTCTTAGAAAGAGTCAAGAGCAATGAGG 180
||||||||||||||||||||||||||||||||||||| || | ||||||||||
Sbjct 119 AAAACTTTTAACCATTCTTTCTCCATTCCCAGTTCTT------AG---A-AGCAATGAGG 168
Query 181 AAGCTTTTCTTGTTAGGGTTTATAGTTGCAGGACTGGTTCTTGG-GAATGAGGCAAATGG 239
||||||||| ||||||||||| |||||||||||||| ||| ||| || ||| ||||| ||
Sbjct 169 AAGCTTTTCGTGTTAGGGTTTGTAGTTGCAGGACTGATTC-TGGTGACTGAAGCAAAAGG 227
Query 240 GTATTTAGAGTTCAATGTCACTGAATTAGATCGCATTGAGGATTTAGAGTTTGGTTTCTC 299
|||||| ||||||||||||||||| ||||||| ||||||||| |||||||||||||||||
Sbjct 228 GTATTTTGAGTTCAATGTCACTGAGTTAGATCACATTGAGGAATTAGAGTTTGGTTTCTC 287
Query 300 CAAATTTAGTTCCAATTTCAATCCATTAATGGTTGGTCTCACACTTATCAGAGGAGCTGG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 288 CAAATTTAGTTCCAATTTCAATCCATTAATGGTTGGTCTCACACTTATCAGAGGAGCTGG 347
Query 360 TTCTAAAGGAGCTGTTTGTTTGGATGGTACATTGCCTGGATATCACTTACATCGTGGACA 419
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 TTCCAAAGGAGCTGTTTGTTTGGATGGTACATTGCCTGGATATCACTTACATCGTGGACA 407
Query 420 TGGATCTGGAGCCAATAGCTGGTTAATTCAATTAGAGGGAGGAGGATGGTGTGACAACAT 479
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 408 CGGATCTGGAGCCAATAGCTGGCTCATTCAATTAGAGGGAGGAGGATGGTGTGACAACAT 467
Query 480 TAGGAACTGTGTATACCGAAAGAAGTCGCGTCGCGGATCTTCTAACTATATGGAGAAACA 539
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 468 AAGGAACTGTGTATACCGAAAGAAGTCGCGTCGTGGATCGTCTAACTATATGGAGAAACA 527
Query 540 AATACAGTTTACAGGAATACTTAGCAATAAAGCTCAAGAAAATCCAGACTTTTTCAACTG 599
||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||
Sbjct 528 GATACAGTTTACAGGAATACTTAGCAATAAAGTTCAAGAAAATCCAGATTTTTTTAACTG 587
Query 600 GAATCGAGTTAAGCTTCGTTACTGCGATGGTGGTTCCTTCAGTGGAGATAGTCAGAACAA 659
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 588 GAATAGAGTTAAGCTTCGTTATTGCGATGGTGGTTCCTTCAGTGGAGATAGTCAGAACAA 647
Query 660 GGCTGCACGGCTTCAGTTTAGAGGAGAGAAGATATGGAGAGCCGCAATGGACGATTTGAA 719
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 GGCTGCAGGGCTTCAGTTTAGAGGAGAGAAGATATGGAGAGCCGCAATGGACGATTTGAA 707
Query 720 GGCAAAGGGAATGCGAAATGCGAAACAGGCACTTCTATCTGGTTGCTCTGCAGGTGGTCT 779
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 708 GGCAAAGGGAATGCGAAATGCGAAACAGGCACTTCTATCTGGATGCTCTGCAGGCGGTCT 767
Query 780 AGCAGTTATTTTACGCTGTGACGAATTCAGAAACTTGTTTTCTGGATGGACCAGAGTTAA 839
|||||| ||||||||||||||||||||||||||||||||||| ||| | |||| ||| ||
Sbjct 768 AGCAGTGATTTTACGCTGTGACGAATTCAGAAACTTGTTTTCAGGAAGTACCAAAGTCAA 827
Query 840 ATGCTTAAGTGATGCAGGCTTGTTCTTGGACACGCCTGATGTATCCGGTGGACACACTAT 899
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 828 ATGCTTAAGTGATGCAGGCTTGTTCTTGGACACGCCTGATGTATCCGGTGGCCACACGAT 887
Query 900 AAGGAATTTATATAACGGCGTTGTGCAGTTGCAGGGAGTGAAGAACAATTTGCCACATTT 959
|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 AAGGAACCTATATAACAGCGTTGTGCAGTTGCAGGGAGTGAAGAACAATTTGCCACATTT 947
Query 960 ATGCACTAACCATCTCAATCCAACCTCTTGTTTCTTCCCTCAAAACTTGATCAGTCAGAT 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 ATGCACTAACCATCTCAATCCAACCTCTTGTTTCTTCCCTCAAAACTTGATCAGTCAGAT 1007
Query 1020 GAAAACTCCTCTTTTCATTGTCAATGCAGCATATGATATTTGGCAGATTCAAAGCAGTAT 1079
||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1008 GAAAACTCCTCTTTTTATTGTCAATGCAGCTTATGATATTTGGCAGATTCAAAGTAGTAT 1067
Query 1080 CGCTCCGCCGAGTGCAGATCCTAGTGGTTATTGGCATGAATGCAGATTAAACCACGGTAG 1139
||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1068 CGCTCCGCCAAGTGCAGATCCTAGTGGTTATTGGCATGAATGCAGATTAAACCATGGAAG 1127
Query 1140 ATGCACTCCGGCGCAGATACGGTTCTTGCAAGGGTTTAGAAACCAAATGTTGAGAGCTGT 1199
|||||| || || ||||| | ||||||||||||||||||||| |||||||||||||||||
Sbjct 1128 ATGCACCCCAGCACAGATCCAGTTCTTGCAAGGGTTTAGAAATCAAATGTTGAGAGCTGT 1187
Query 1200 GAGTGGTTTCTCGAATTCGAAAAAGAACGGTTTGTTCATCAATTCTTGCTTTGCTCATTG 1259
||| ||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 1188 GAGGGGTTTTTCGAATTTGAAAAAGAACGGTTTGTTTATCAATTCTTGCTTTGCTCATTG 1247
Query 1260 CCAAACCGAAAGGCAAGACACTTGGTTCGCCGATGATTCTCCTGTTATACACAAAAAGGC 1319
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1248 CCAAACCGAAAGACAAGACACTTGGTTCGCCGATGATTCTCCTGTTATCCACAAAAAGGC 1307
Query 1320 GGTGGCGATAGCGGTTGGAGATTGGTATTTCGATAGAGCTGAAGTGAAGCTAATAGATTG 1379
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1308 TGTTGCGATAGCGGTTGGAGATTGGTATTTTGATAGAGCTGAAGTGAAGCTAATAGATTG 1367
Query 1380 TCCATACCCGTGTGATAGGAGCTGTCACAATCTGGTCTTCAGATGAATGATCTT 1433
|||||| |||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1368 TCCATATCCGTGTGATAGGAGTTGCCACAATCTGGTCTTCAGATGAATGATCTT 1421
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59801684650
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5