BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G26670.1 Length=1596 Score E Sequences producing significant alignments: (Bits) Value Ahg489494 jgi|Araly1|489494|fgenesh2_kg.6__2628__AT5G26670.1 2167 0.0 > Ahg489494 jgi|Araly1|489494|fgenesh2_kg.6__2628__AT5G26670.1 Length=1459 Score = 2167 bits (1173), Expect = 0.0 Identities = 1350/1434 (94%), Gaps = 18/1434 (1%) Strand=Plus/Plus Query 5 CTCTTGCCTCTGtc-tctttcttcttcttcttcttc-ttctCATTAAAAGCTGAACACAA 62 ||| || |||| || || |||||||||||||||||| ||||||||||||||||||||||| Sbjct 1 CTC-TGTCTCTTTCTTC-TTCTTCTTCTTCTTCTTCTTTCTCATTAAAAGCTGAACACAA 58 Query 63 AGATCTATTCTTTCACTAACACATTACCAGTTTCTGCATTTGTATTATATCC--TTTTCT 120 ||||| ||||||||||||||||||| ||||||||||||||||| |||||||| |||||| Sbjct 59 AGATCAATTCTTTCACTAACACATTGCCAGTTTCTGCATTTGTTTTATATCCTTTTTTCT 118 Query 121 AAAACTTTTAACCATTCTTTCTCCATTCCCAGTTCTTAGAAAGAGTCAAGAGCAATGAGG 180 ||||||||||||||||||||||||||||||||||||| || | |||||||||| Sbjct 119 AAAACTTTTAACCATTCTTTCTCCATTCCCAGTTCTT------AG---A-AGCAATGAGG 168 Query 181 AAGCTTTTCTTGTTAGGGTTTATAGTTGCAGGACTGGTTCTTGG-GAATGAGGCAAATGG 239 ||||||||| ||||||||||| |||||||||||||| ||| ||| || ||| ||||| || Sbjct 169 AAGCTTTTCGTGTTAGGGTTTGTAGTTGCAGGACTGATTC-TGGTGACTGAAGCAAAAGG 227 Query 240 GTATTTAGAGTTCAATGTCACTGAATTAGATCGCATTGAGGATTTAGAGTTTGGTTTCTC 299 |||||| ||||||||||||||||| ||||||| ||||||||| ||||||||||||||||| Sbjct 228 GTATTTTGAGTTCAATGTCACTGAGTTAGATCACATTGAGGAATTAGAGTTTGGTTTCTC 287 Query 300 CAAATTTAGTTCCAATTTCAATCCATTAATGGTTGGTCTCACACTTATCAGAGGAGCTGG 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 288 CAAATTTAGTTCCAATTTCAATCCATTAATGGTTGGTCTCACACTTATCAGAGGAGCTGG 347 Query 360 TTCTAAAGGAGCTGTTTGTTTGGATGGTACATTGCCTGGATATCACTTACATCGTGGACA 419 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 348 TTCCAAAGGAGCTGTTTGTTTGGATGGTACATTGCCTGGATATCACTTACATCGTGGACA 407 Query 420 TGGATCTGGAGCCAATAGCTGGTTAATTCAATTAGAGGGAGGAGGATGGTGTGACAACAT 479 ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 408 CGGATCTGGAGCCAATAGCTGGCTCATTCAATTAGAGGGAGGAGGATGGTGTGACAACAT 467 Query 480 TAGGAACTGTGTATACCGAAAGAAGTCGCGTCGCGGATCTTCTAACTATATGGAGAAACA 539 |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 468 AAGGAACTGTGTATACCGAAAGAAGTCGCGTCGTGGATCGTCTAACTATATGGAGAAACA 527 Query 540 AATACAGTTTACAGGAATACTTAGCAATAAAGCTCAAGAAAATCCAGACTTTTTCAACTG 599 ||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||| Sbjct 528 GATACAGTTTACAGGAATACTTAGCAATAAAGTTCAAGAAAATCCAGATTTTTTTAACTG 587 Query 600 GAATCGAGTTAAGCTTCGTTACTGCGATGGTGGTTCCTTCAGTGGAGATAGTCAGAACAA 659 |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 588 GAATAGAGTTAAGCTTCGTTATTGCGATGGTGGTTCCTTCAGTGGAGATAGTCAGAACAA 647 Query 660 GGCTGCACGGCTTCAGTTTAGAGGAGAGAAGATATGGAGAGCCGCAATGGACGATTTGAA 719 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 648 GGCTGCAGGGCTTCAGTTTAGAGGAGAGAAGATATGGAGAGCCGCAATGGACGATTTGAA 707 Query 720 GGCAAAGGGAATGCGAAATGCGAAACAGGCACTTCTATCTGGTTGCTCTGCAGGTGGTCT 779 |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 708 GGCAAAGGGAATGCGAAATGCGAAACAGGCACTTCTATCTGGATGCTCTGCAGGCGGTCT 767 Query 780 AGCAGTTATTTTACGCTGTGACGAATTCAGAAACTTGTTTTCTGGATGGACCAGAGTTAA 839 |||||| ||||||||||||||||||||||||||||||||||| ||| | |||| ||| || Sbjct 768 AGCAGTGATTTTACGCTGTGACGAATTCAGAAACTTGTTTTCAGGAAGTACCAAAGTCAA 827 Query 840 ATGCTTAAGTGATGCAGGCTTGTTCTTGGACACGCCTGATGTATCCGGTGGACACACTAT 899 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 828 ATGCTTAAGTGATGCAGGCTTGTTCTTGGACACGCCTGATGTATCCGGTGGCCACACGAT 887 Query 900 AAGGAATTTATATAACGGCGTTGTGCAGTTGCAGGGAGTGAAGAACAATTTGCCACATTT 959 |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 888 AAGGAACCTATATAACAGCGTTGTGCAGTTGCAGGGAGTGAAGAACAATTTGCCACATTT 947 Query 960 ATGCACTAACCATCTCAATCCAACCTCTTGTTTCTTCCCTCAAAACTTGATCAGTCAGAT 1019 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 948 ATGCACTAACCATCTCAATCCAACCTCTTGTTTCTTCCCTCAAAACTTGATCAGTCAGAT 1007 Query 1020 GAAAACTCCTCTTTTCATTGTCAATGCAGCATATGATATTTGGCAGATTCAAAGCAGTAT 1079 ||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 1008 GAAAACTCCTCTTTTTATTGTCAATGCAGCTTATGATATTTGGCAGATTCAAAGTAGTAT 1067 Query 1080 CGCTCCGCCGAGTGCAGATCCTAGTGGTTATTGGCATGAATGCAGATTAAACCACGGTAG 1139 ||||||||| |||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 1068 CGCTCCGCCAAGTGCAGATCCTAGTGGTTATTGGCATGAATGCAGATTAAACCATGGAAG 1127 Query 1140 ATGCACTCCGGCGCAGATACGGTTCTTGCAAGGGTTTAGAAACCAAATGTTGAGAGCTGT 1199 |||||| || || ||||| | ||||||||||||||||||||| ||||||||||||||||| Sbjct 1128 ATGCACCCCAGCACAGATCCAGTTCTTGCAAGGGTTTAGAAATCAAATGTTGAGAGCTGT 1187 Query 1200 GAGTGGTTTCTCGAATTCGAAAAAGAACGGTTTGTTCATCAATTCTTGCTTTGCTCATTG 1259 ||| ||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||| Sbjct 1188 GAGGGGTTTTTCGAATTTGAAAAAGAACGGTTTGTTTATCAATTCTTGCTTTGCTCATTG 1247 Query 1260 CCAAACCGAAAGGCAAGACACTTGGTTCGCCGATGATTCTCCTGTTATACACAAAAAGGC 1319 |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1248 CCAAACCGAAAGACAAGACACTTGGTTCGCCGATGATTCTCCTGTTATCCACAAAAAGGC 1307 Query 1320 GGTGGCGATAGCGGTTGGAGATTGGTATTTCGATAGAGCTGAAGTGAAGCTAATAGATTG 1379 || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1308 TGTTGCGATAGCGGTTGGAGATTGGTATTTTGATAGAGCTGAAGTGAAGCTAATAGATTG 1367 Query 1380 TCCATACCCGTGTGATAGGAGCTGTCACAATCTGGTCTTCAGATGAATGATCTT 1433 |||||| |||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 1368 TCCATATCCGTGTGATAGGAGTTGCCACAATCTGGTCTTCAGATGAATGATCTT 1421 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59801684650 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5