BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G26673.1

Length=303
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg942227 jgi|Araly1|942227|scaffold_602771.1                        316    4e-86


> Ahg942227 jgi|Araly1|942227|scaffold_602771.1
Length=317

 Score =  316 bits (171),  Expect = 4e-86
 Identities = 231/259 (89%), Gaps = 8/259 (3%)
 Strand=Plus/Plus

Query  1    ATGGCGGCAAACATGTGGAAGACGATTATGATGATAGCTTTGATAATGATAGGATGTGGT  60
            |||||||||||||||||||||| ||| |||||| | || |||||||||||||||||||||
Sbjct  21   ATGGCGGCAAACATGTGGAAGATGATGATGATGGTGGCATTGATAATGATAGGATGTGGT  80

Query  61   TTACAAGCATGCAATGGAATGAATGTGGATAAAAGCAAGCCAACGATGTTTAATAGG-TT  119
            |||||||||||||||||||||||||||| ||||||||| ||||||||||| || ||| ||
Sbjct  81   TTACAAGCATGCAATGGAATGAATGTGGGTAAAAGCAATCCAACGATGTTCAA-AGGATT  139

Query  120  TACCTGCTTCAGAAGATGTTCCATAACTTGTAGTGTAGACCAAAGCCTAGAC-AAAACC-  177
            | ||||||||||||||||||||||||||||||||||| |||||| || | || |||||  
Sbjct  140  TGCCTGCTTCAGAAGATGTTCCATAACTTGTAGTGTAAACCAAAACCAAAACCAAAACAA  199

Query  178  ---CCA-TGTTACAAAAAATGTTTGAACAAATGTGGTCTAGTTTTGGATTCAAAACCAAA  233
               ||  |||||||||||||||||||| |||||||||||||| | || ||||||||||||
Sbjct  200  AAACCGGTGTTACAAAAAATGTTTGAAGAAATGTGGTCTAGTATGGGTTTCAAAACCAAA  259

Query  234  ACCAAcatcatcatcatca  252
            |||| ||||||||||||||
Sbjct  260  ACCAGCATCATCATCATCA  278



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10645409331


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5