BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G26673.1 Length=303 Score E Sequences producing significant alignments: (Bits) Value Ahg942227 jgi|Araly1|942227|scaffold_602771.1 316 4e-86 > Ahg942227 jgi|Araly1|942227|scaffold_602771.1 Length=317 Score = 316 bits (171), Expect = 4e-86 Identities = 231/259 (89%), Gaps = 8/259 (3%) Strand=Plus/Plus Query 1 ATGGCGGCAAACATGTGGAAGACGATTATGATGATAGCTTTGATAATGATAGGATGTGGT 60 |||||||||||||||||||||| ||| |||||| | || ||||||||||||||||||||| Sbjct 21 ATGGCGGCAAACATGTGGAAGATGATGATGATGGTGGCATTGATAATGATAGGATGTGGT 80 Query 61 TTACAAGCATGCAATGGAATGAATGTGGATAAAAGCAAGCCAACGATGTTTAATAGG-TT 119 |||||||||||||||||||||||||||| ||||||||| ||||||||||| || ||| || Sbjct 81 TTACAAGCATGCAATGGAATGAATGTGGGTAAAAGCAATCCAACGATGTTCAA-AGGATT 139 Query 120 TACCTGCTTCAGAAGATGTTCCATAACTTGTAGTGTAGACCAAAGCCTAGAC-AAAACC- 177 | ||||||||||||||||||||||||||||||||||| |||||| || | || ||||| Sbjct 140 TGCCTGCTTCAGAAGATGTTCCATAACTTGTAGTGTAAACCAAAACCAAAACCAAAACAA 199 Query 178 ---CCA-TGTTACAAAAAATGTTTGAACAAATGTGGTCTAGTTTTGGATTCAAAACCAAA 233 || |||||||||||||||||||| |||||||||||||| | || |||||||||||| Sbjct 200 AAACCGGTGTTACAAAAAATGTTTGAAGAAATGTGGTCTAGTATGGGTTTCAAAACCAAA 259 Query 234 ACCAAcatcatcatcatca 252 |||| |||||||||||||| Sbjct 260 ACCAGCATCATCATCATCA 278 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 10645409331 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5