BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G26680.1
Length=1379
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489493 jgi|Araly1|489493|fgenesh2_kg.6__2627__AT5G26680.1 2211 0.0
> Ahg489493 jgi|Araly1|489493|fgenesh2_kg.6__2627__AT5G26680.1
Length=1364
Score = 2211 bits (1197), Expect = 0.0
Identities = 1322/1380 (96%), Gaps = 17/1380 (1%)
Strand=Plus/Plus
Query 1 CTTTCTCTGTAACCGCCATGGGTATTAAGGGTTTAACGAAGCTTTTAGCCGACAATGCGC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTTTCTCTGTAACCGCCATGGGTATTAAGGGTTTAACGAAGCTTTTAGCCGACAATGCGC 60
Query 61 CTAGTTGTATGAAAGAACAGAAATTCGAGAGCTATTTTGGTCGGAAAATCGCTGTTGATG 120
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 61 CAAGTTGTATGAAAGAACAGAAATTCGAGAGCTATTTCGGTCGGAAAATCGCTGTTGATG 120
Query 121 CTAGCATGAGCATTTACCAATTCCTCATTGTTGTTGGAAGAACTGGGACTGAAATGCTCA 180
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 121 CTAGCATGAGCATTTACCAATTCCTTATTGTTGTAGGAAGAACTGGGACTGAAATGCTCA 180
Query 181 CTAATGAAGCTGGTGAAGTCACTAGTCATTTACAAGGGATGTTTAATCGAACGATTCGTC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTAATGAAGCTGGTGAAGTCACTAGTCATTTACAAGGGATGTTTAATCGAACGATTCGTC 240
Query 241 TTCTTGAAGCTGGAATTAAGCCTGTCTATGTTTTCGATGGGAAGCCCCCGGAGTTAAAGA 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 241 TTCTTGAAGCTGGAATTAAGCCTGTCTATGTTTTCGATGGAAAGCCCCCGGAGTTAAAGA 300
Query 301 GACAGGAACTGGCTAAACGTTACTCCAAGAGAGCTGATGCAACTGCAGATTTGACTGGTG 360
|||| |||||||| ||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 301 GACAAGAACTGGCAAAACGTTACTCGAAGAGAGCCGATGCAACTGCAGATTTGACTGGTG 360
Query 361 CAATTGAGGCAGGAAACAAGGAAGACATTGAGAAGTACAGCAAACGAACTGTGAAGGTGA 420
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 361 CAATTGAGGCAGGAAACAAGGAGGACATTGAGAAGTACAGCAAACGAACTGTGAAGGTGA 420
Query 421 CAAAACAGCATAATGATGACTGCAAAAGACTCTTGAGACTCATGGGGGTGCCTGTTGTTG 480
|||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 421 CAAAACAGCACAATGACGACTGCAAAAGACTCTTGAGACTCATGGGGGTGCCCGTTGTTG 480
Query 481 AGGCCACTTCCGAGGCTGAAGCGCAATGTGCTGCACTTTGCAAGTCAGGAAAGGTTTATG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AGGCCACTTCCGAGGCTGAAGCGCAATGTGCTGCACTTTGCAAGTCAGGAAAGGTTTATG 540
Query 541 GTGTGGCTTCTGAAGATATGGATTCCTTGACTTTTGGAGCTCCTAAGTTTCTTCGCCACC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GTGTGGCTTCTGAAGATATGGATTCCTTGACTTTTGGAGCTCCTAAGTTTCTTCGCCACC 600
Query 601 TGATGGATCCTAGCTCCAGAAAGATCCCTGTCATGGAATTTGAAGTTGCTAAGATTTTAG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TGATGGATCCTAGCTCCAGAAAGATCCCTGTCATGGAATTTGAAGTTGCTAAGATTTTAG 660
Query 661 AAGAGCTTCAACTTACCATGGATCAGTTCATCGACTTGTGTATATTGTCTGGATGTGACT 720
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 661 AAGAGCTTCAACTTACCATGGATCAGTTCATCGACTTGTGCATATTGTCTGGATGTGACT 720
Query 721 ATTGTGACAGCATCCGAGGTATCGGAGGGCAGACTGCCCTAAAGCTCATTCGCCAGCATG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ATTGTGACAGCATCCGAGGTATCGGAGGGCAGACTGCCCTAAAGCTCATTCGCCAGCATG 780
Query 781 GATCTATTGAGACTATACTCGAAAATCTAAACAAAGAAAGGTATCAAATACCTGAGGAAT 840
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 781 GATCTATTGAGACTATACTCGAAAATCTAAACAAAGAAAGGTATCAAATACCCGAGGAAT 840
Query 841 GGCCATATAATGAAGCTCGAAAACTTTTCAAAGAACCTGACGTAATAACAGACGAAGAGC 900
|||||||||| ||||||||||||||||| ||||||||||| || |||||||| || ||||
Sbjct 841 GGCCATATAACGAAGCTCGAAAACTTTTTAAAGAACCTGATGTCATAACAGATGAGGAGC 900
Query 901 AGCTTGATATTAAGTGGACCTCTCCAGATGAAGAGGGTATAGTTCAGTTTTTGGTGAATG 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 AGCTTGATATTAAGTGGACCTCTCCAGATGAAGAGGGTATAGTTCAGTTTTTGGTGAATG 960
Query 961 AAAATGGATTCAACATAGACAGGGTAACCAAGGCGATAGAGAAAATTAAAACTGCGAAGA 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 AAAATGGATTCAACATAGACAGGGTAACCAAGGCGATAGAGAAAATTAAAACTGCGAAGA 1020
Query 1021 ATAAATCATCGCAGGGCAGGCTGGAGTCATTTTTCAAGCCAGTTGCTAACTCATCCGTAC 1080
| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1021 ACAAATCATCCCAGGGCAGGCTGGAATCATTTTTCAAGCCAGTTGCTAACTCATCCGTGC 1080
Query 1081 CTGCTAAGAGAAAGGGAAACCTTATATGCCTAGTTGCCTCCGAAGTGATTCC-CAATATA 1139
|||||||||||||||||||||||||||||||||||| ||| || |||||||| |||||||
Sbjct 1081 CTGCTAAGAGAAAGGGAAACCTTATATGCCTAGTTGTCTCTGAGGTGATTCCTCAATATA 1140
Query 1140 CTGGATCACAGGGTACCAAATGCTTGCTCAGGCAGTATAAACCAGCCATCAGCAATAAAG 1199
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 1141 CTGGATCACAGGGTACCAAATGCTTGCTCCGGCAGTATAAACCAGCTATCAGCAATAAAG 1200
Query 1200 TCTCCTCTCTGCATGCTTTTGGATGGTACTCCTCCGATAACATTGTTAGCGTTAGGCTGT 1259
|||||||||||||||||||||||||| |||||||| | |||||||||||| |||||||||
Sbjct 1201 TCTCCTCTCTGCATGCTTTTGGATGGAACTCCTCCAAAAACATTGTTAGCATTAGGCTGT 1260
Query 1260 TCTCTCTATCCCGGGCTTCCAACCTTTCGGTTCACATGGCTGGAGGAAATCCCAGAGAGT 1319
| ||||||||| ||| || ||||||||||| | | | |||||||||||
Sbjct 1261 TTTCTCTATCCTGGGGTTTCAACCTTTCGG---A-A-------A-----TCCCAGAGAGT 1304
Query 1320 ACCACTAAAGGAGCAGCAAATAAGAAAACCAAAGGAGCTGGTGGAAGGAAGAAGAAGTAA 1379
||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||
Sbjct 1305 ACCACTAAAGGAGCAGCAAATAAGAAAACTAAGGGAGGTGGTGGAAGGAAGAAGAAGTAA 1364
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51618429618
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5