BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G26690.1

Length=614
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg351661 jgi|Araly1|351661|fgenesh1_pg.C_scaffold_6002254           510    4e-144


> Ahg351661 jgi|Araly1|351661|fgenesh1_pg.C_scaffold_6002254
Length=345

 Score =  510 bits (276),  Expect = 4e-144
 Identities = 326/349 (93%), Gaps = 8/349 (2%)
 Strand=Plus/Plus

Query  109  ATGACGACTAAGAAAATCGAGATCAAAGTGGATATCGATTGTGAGAAATGCAAACATGCA  168
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  1    ATGACGACTAAGAAAATCGAGATCAAAGTGAATATCGATTGTGAGAAATGCAAACATGCA  60

Query  169  ATCATGGAAGCTGTCACAGAGCTAGAAGGTGTGAATATAGTTTCACTGGATCAAGAGAAG  228
            |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   ATCATGGAGGCTGTTACAGAGCTAGAAGGTGTGAATATAGTTTCACTGGATCAAGAGAAG  120

Query  229  AGTATACTAACCGTGGTGGGTACTATGGATCCGGTCTGCGTAGCAGAACAGCTTAAGAAG  288
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GGTATACTAACCGTGGTGGGTACTATGGATCCGGTCTGCGTAGCAGAACAGCTTAAGAAG  180

Query  289  ATCAATA-AGAAACCAGTAGTAATCAGCGTCGGACCACCGAAAAAACCAGACCCAAAA--  345
             | || | ||||||||||||||||||||||||||||||| ||||||||||||||||||  
Sbjct  181  GTTAA-ACAGAAACCAGTAGTAATCAGCGTCGGACCACCAAAAAAACCAGACCCAAAAAA  239

Query  346  -CCAGACCCTAAGAAGGACCCTTGTTTCATTCCTTACTGCTACTACACCCCCCGTGACAT  404
             |||||||| ||||||||||||||||||   ||||||| ||| |||||||||| ||||||
Sbjct  240  ACCAGACCCCAAGAAGGACCCTTGTTTC---CCTTACTACTATTACACCCCCCTTGACAT  296

Query  405  GGTATCAGTTAATACCTATGAAAGCGGAAGTGGCTGCACCATTGTTTGA  453
            ||||||||| ||||||||||| |||||||| ||||||||||| ||||||
Sbjct  297  GGTATCAGTCAATACCTATGAGAGCGGAAGCGGCTGCACCATCGTTTGA  345



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22454398113


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5