BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G26700.1
Length=868
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489492 jgi|Araly1|489492|fgenesh2_kg.6__2626__AT5G26700.1 1166 0.0
Ahg489491 jgi|Araly1|489491|fgenesh2_kg.6__2625__AT5G26710.1 141 8e-33
> Ahg489492 jgi|Araly1|489492|fgenesh2_kg.6__2626__AT5G26700.1
Length=786
Score = 1166 bits (631), Expect = 0.0
Identities = 739/791 (93%), Gaps = 7/791 (1%)
Strand=Plus/Plus
Query 1 ATTGTGAATTTATTAGTAATTTATAAATTCATCAAAAACAAACTCTTTTCAGaaaaaaaa 60
|||||||||||||| |||| |||||||||||||||||||||||||||||| | |||||
Sbjct 1 ATTGTGAATTTATTCGTAA-TTATAAATTCATCAAAAACAAACTCTTTTCTG--AAAAAT 57
Query 61 TAACAACAACAACAATAATGGCGTCTTTTGCAACCCATCttgttgttgttgttacaatgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 58 TAACAACAACAACAATAATGGCGTCTTTTGCAACCCATCTTGTTGTTGTTGTTACCATGA 117
Query 121 tgtttgtAGCCATGGCCTCCGCGGAGATGCTTCAAGATGTTTGTGTTGCTGATTTGTCTA 180
|| | | |||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 TGGTCGCAGCCGTGGCCGCCGCGGAGATGCTTCAAGATGTTTGTGTTGCTGATTTGTCTA 177
Query 181 ATGCGGTCAAGGTCAACGGATACACTTGCAAGGACTCAACACAAATAACACCAGAAGACT 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 178 ATGCGGTCAAGGTCAACGGATACACTTGCAAGGACTCAACACAAATAACACCGGAAGACT 237
Query 241 TCTACTTCAAAGGCTTAGCCAACATTGCCGCCACAAACACCTCTACCGGCTCAGTCGTGA 300
||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||
Sbjct 238 TCTACTTCAAAGGCTTAGCCACCATCGCCGCCACAAACACCTCCACCGGCTCAGTCGTGA 297
Query 301 CCGGAGCCAACGTAGAAAAGCTACCGGGACTCAACACTCTCGGCCTCTCCATGTCCCGCA 360
|||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 298 CCGGAGCCAATGTAGAGAAGCTACCAGGACTCAACACTCTCGGCCTCTCCATGTCCCGCA 357
Query 361 TCGACTACGCCCCAAACGGCCTAAACCCACCCCATGTCCACCCACGTGCCTCCGAGATCA 420
|||||||||||||||| |||||||||||||| ||| |||| ||||| |||||||||||||
Sbjct 358 TCGACTACGCCCCAAATGGCCTAAACCCACCTCATATCCATCCACGCGCCTCCGAGATCA 417
Query 421 TTTTCGTCCTTGAAGGTCAGCTCTATGTTGGCTTTGTAACAACCG-CTGGAAAACTCATC 479
||||||||||||||||||||||||| || |||||||||||||||| | ||||||||||||
Sbjct 418 TTTTCGTCCTTGAAGGTCAGCTCTACGTCGGCTTTGTAACAACCGGC-GGAAAACTCATC 476
Query 480 GCCAAGA-ACCTTAACAAGGGAGACGTTTTCACCTTCCCCAAGGGACTCATCCATTTCCA 538
||||| | ||||||||||||||||||||||| ||||||| ||||||||| ||||||||||
Sbjct 477 GCCAA-ATACCTTAACAAGGGAGACGTTTTCGCCTTCCCAAAGGGACTCCTCCATTTCCA 535
Query 539 GAAGAACATTGCCAACAGTCCAGCATCTGTACTCGCAGCCTTCGATAGCCAATTGCCCGG 598
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||
Sbjct 536 GAAGAACATTGCCAACTCTCCAGCATCTGTACTCGCAGCCTTCGATAGCCAACTGCCTGG 595
Query 599 AACACAATCACTTGTCGCCTCTCTCTTTGGAGCTCTTCCCGATGACATTCTGGCCAAGTC 658
||||||||||||||| ||||||||||||||||||||||| || ||||||| | ||| ||
Sbjct 596 AACACAATCACTTGTAGCCTCTCTCTTTGGAGCTCTTCCTGACAACATTCTCGTCAAATC 655
Query 659 ATTCCAGCTCAAACACAAACAGGTTAAGAAGATCAAACTGAGATACGCACCCAAGAAATG 718
|||||||||||||| |||||||||||||||||||||| |||||||| ||||||||| |||
Sbjct 656 ATTCCAGCTCAAACCCAAACAGGTTAAGAAGATCAAATTGAGATACACACCCAAGATATG 715
Query 719 AGTTTGTTTTTGTTTATATTGTAAACACTAAGCAAAGAAGAATGAATCAATATAAAGTTT 778
||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 716 AGTTTGTTTTTGTCTCTATTGTAAACACTAAGCAAAGAAGAATGAATCAAGATAAAGTTT 775
Query 779 GCAACTTTAAA 789
|||||||||||
Sbjct 776 GCAACTTTAAA 786
> Ahg489491 jgi|Araly1|489491|fgenesh2_kg.6__2625__AT5G26710.1
Length=2339
Score = 141 bits (76), Expect = 8e-33
Identities = 107/120 (89%), Gaps = 9/120 (8%)
Strand=Plus/Minus
Query 735 TATTGTAAACACTAAGCAAAGAAGAATGAATCAATATAAAGTTTGCAACTTTAAAACTAT 794
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 2339 TATTGTAAACACTAAGCAAAGAAGAATGAATCAAGATAAAGTTTGCAACTTTAAA-CTAT 2281
Query 795 TATGAGATGAAAC-T-AA--A--GAACTGATAAAA-AGCTTTGTTTT-CATTGTTTTAAA 846
|||||||||||| | || | |||||||||||| |||| |||||| |||||| |||||
Sbjct 2280 TATGAGATGAAAAATTAAGCAAAGAACTGATAAAAGAGCTCTGTTTTTCATTGTCTTAAA 2221
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32137619031
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5