BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G26717.1

Length=440
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg942228 jgi|Araly1|942228|scaffold_602772.1                        368    2e-101


> Ahg942228 jgi|Araly1|942228|scaffold_602772.1
Length=290

 Score =  368 bits (199),  Expect = 2e-101
 Identities = 255/282 (90%), Gaps = 4/282 (1%)
 Strand=Plus/Plus

Query  33   AAAGAAATCTTTG-AAGAGAAAAATGACGGGAAACATGTATAAGATGATGATGTTGATGG  91
            ||||||| | ||| ||||| |||||||| |||||| ||| ||||||||||||||||||||
Sbjct  1    AAAGAAA-C-TTGTAAGAG-AAAATGACAGGAAACGTGTGTAAGATGATGATGTTGATGG  57

Query  92   CATTGATAATGATGGCATGTGGTTTACAAGCATGCAATGCAACGAATGTTGATGAAAGCA  151
            ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||  ||
Sbjct  58   CATTGATAATGATGGCATGTGGTTTACAAGCATGCAATGGAACGAATTTTGATGAATTCA  117

Query  152  AGCCAGATCCAAAACTTGAGTGCTTCAAAAACTGTTCCATAAGTTGTGGCAAACAAAACA  211
            |||||||| ||| | ||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct  118  AGCCAGATTCAAGATTTGTGTGCTTCAAAAACTGTTCTATAAGTTGTGGCAAACAAAACA  177

Query  212  AACCTTGTTACGAAGATTGTTTGACGAAATGTGGTCTCCCACAACGTCCTTCTACATCAA  271
            |||| |||||| |||||||||||||||||||||||||||||||||| ||||| | |||||
Sbjct  178  AACCATGTTACCAAGATTGTTTGACGAAATGTGGTCTCCCACAACGACCTTCAAGATCAA  237

Query  272  CACCAGCATCTTCCTCCACCACGGCATAATAAGTTTCCATTT  313
            ||||| |||||||| ||||| |||| ||||  ||||||||||
Sbjct  238  CACCATCATCTTCCCCCACCGCGGCTTAATCTGTTTCCATTT  279



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15872725024


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5