BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G26720.1

Length=719
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg489490 jgi|Araly1|489490|fgenesh2_kg.6__2624__AT5G26720.1         501    3e-141


> Ahg489490 jgi|Araly1|489490|fgenesh2_kg.6__2624__AT5G26720.1
Length=417

 Score =  501 bits (271),  Expect = 3e-141
 Identities = 384/432 (89%), Gaps = 33/432 (8%)
 Strand=Plus/Plus

Query  72   GTTTGGTTAATGCCTGGGAATCACAGTGAGATTTCATTGAATGAACAAAACAGAGTCGAT  131
            |||||||||||||||||||| ||||||||||| || || ||||||||||||||||||   
Sbjct  1    GTTTGGTTAATGCCTGGGAACCACAGTGAGATATCGTTAAATGAACAAAACAGAGTC---  57

Query  132  GATAACGATACCaagacgaagacgacgacaaggaagaagaagaagaagaaagaTGTAACA  191
            ||||||||||| |||||| | | |||||||||||||||||||||||||||||||||||| 
Sbjct  58   GATAACGATACGAAGACG-A-A-GACGACAAGGAAGAAGAAGAAGAAGAAAGATGTAACC  114

Query  192  ATCGTTGATGATGACGATAATCAATTCGATACCACCAATCAATTGGT-A--AAGAGTAAG  248
            |||||||||||||| ||||||||||| |||| ||||||||||||||| |  |||||||||
Sbjct  115  ATCGTTGATGATGATGATAATCAATTGGATAGCACCAATCAATTGGTAACGAAGAGTAAG  174

Query  249  AATCGATTTTTAGGTAAGTTTCGTAAGAAACCCAAATCGCCAAAACGATGGTCTGGGTCG  308
            ||||||||| |||  |||||||| ||||||||||||||||| |||  |      ||||||
Sbjct  175  AATCGATTTATAGCCAAGTTTCGAAAGAAACCCAAATCGCC-AAA--A------GGGTCG  225

Query  309  CGTAAAGGTGGGTGCTTTC--GTG-TGATGAGACCTCGAAGGAGAGA-A-GGA--G-G-T  359
            ||||||||||| |||||||  ||| |||||||||||||||||||||| | |||  | | |
Sbjct  226  CGTAAAGGTGGATGCTTTCGTGTGATGATGAGACCTCGAAGGAGAGAGAGGGATGGTGAT  285

Query  360  GATGATGAT--T-C---TTCGGTTTCGTCTCCAGTTTCTGATCCTAATGATGAAAGGTTT  413
            |||||||||  | |   |||||||||||||||||||||||||||||||||||||||||||
Sbjct  286  GATGATGATGATGCTGATTCGGTTTCGTCTCCAGTTTCTGATCCTAATGATGAAAGGTTT  345

Query  414  AGTCATGAGATGTTGAGAGTTATGTTAGAGACTAATGATTTCTGCTCTGATGAGTGTAAT  473
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  346  AGTCATGAGATGATGAGAGTTATGTTAGAGACTAATGATTTCTGCTCTGATGAGTGTAAT  405

Query  474  CCACATCGGTGA  485
            ||||||||||||
Sbjct  406  CCACATCGGTGA  417



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26457304398


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5