BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G26730.1
Length=813
Score E
Sequences producing significant alignments: (Bits) Value
Ahg351658 jgi|Araly1|351658|fgenesh1_pg.C_scaffold_6002251 793 0.0
> Ahg351658 jgi|Araly1|351658|fgenesh1_pg.C_scaffold_6002251
Length=858
Score = 793 bits (429), Expect = 0.0
Identities = 476/499 (95%), Gaps = 2/499 (0%)
Strand=Plus/Plus
Query 316 CCACATCTCATATTGAGACATGACAACTACAACCAAACCGACCTCATCTCTGCCATGACC 375
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 CCACATCTCATATTGAGACATGACAACTACAACCAAACCGATCTCATCTCTGCCATGACC 420
Query 376 GACATGAGAAGGCAATCTTACAACGGTTTTGTCATCCTTCTTCGTTTCCTCAACGATACA 435
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 421 GACATGAGAAGGCAATCTTACAACGGTTTTGTCATCCTTCTCCGTTTCCTCAACGATACA 480
Query 436 AATTACTTCAGGAACACAGATATTACTTTCTTGATGCCTAGCGACAACGATATTTCTCAT 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AATTACTTCAGGAACACAGATATTACTTTCTTGATGCCTAGCGACAACGATATTTCTCAT 540
Query 496 GCAGACATTACTCCGGAGAGTCTTGAAACATTTATCCTAAAACATACGATCCCTGCTTGG 555
|||||||||||||| |||| |||||| |||||||||||||||||||| ||||| || |||
Sbjct 541 GCAGACATTACTCCAGAGAATCTTGAGACATTTATCCTAAAACATACCATCCCGGCATGG 600
Query 556 CTTATGATCAACCACATGCTTCATTTTCCAAACAGAACTCTTGTTCCTTGTAGCTTCTCT 615
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 601 CTTATGATCAATCACATGCTTCATTTTCCAAACAGAACTCTTGTTCCTTGTAGCCTCTCT 660
Query 616 GATAGAATGTTCACCATCACAAAATCTGGAGGGTCCGGGATATATGTGAACAACGCGAGG 675
|||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 661 GATAAAATGTTCACCATCACAAAATCTGGAGGGTCCGGGATTTATGTGAACAATGCGAGG 720
Query 676 ATCGTTACTCCTAATGTTTGTCAGAATTCTCGTATATCTTGCCATGGAATCAGCGACGTT 735
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 721 ATTGTTACTCCTAATGTTTGTCAGAATTCTCGTATATCTTGCCATGGAATCAGTGACGTT 780
Query 736 ATCT-CATTCAACCAAAACTATGTTTCAACGAAAATGTTACCATCAGTTCGTCGAAACAT 794
|| | ||||||||||||||||| | ||||||||||||||| |||| ||||||||||||||
Sbjct 781 AT-TGCATTCAACCAAAACTATATGTCAACGAAAATGTTATCATCCGTTCGTCGAAACAT 839
Query 795 CACTTCGTCAAAGCATTGA 813
|||||||| |||||||||
Sbjct 840 CACTTCGTTGAAGCATTGA 858
Score = 366 bits (198), Expect = 1e-100
Identities = 237/255 (93%), Gaps = 6/255 (2%)
Strand=Plus/Plus
Query 7 ATGTGGTGGGTTGTACATCGACGGATGAACAAGCGGAACTTAAACCGTGATTGCGAGAAT 66
|||||||||||||||||||||||||||| |||| |||||||||| |||||||| ||||||
Sbjct 1 ATGTGGTGGGTTGTACATCGACGGATGAGCAAGAGGAACTTAAATCGTGATTGTGAGAAT 60
Query 67 AAGAGGATATGTGAGTTGGGGAAAGACTTGGAAGAGATATTAAAGGGGAGGCTCGAGACG 126
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 61 AAGAGGATATGTGAGTTGGGGAAAGACTTGGAGGAGATACTAAAGGGGAGGCTCGAGACG 120
Query 127 ATAGAGGAGGAACCGGAAGCAGAAGAGCGAGAGCGGTTAGGAGACTCGCA--T--A-A-G 180
||||||||||||||||||| |||||||||||||||||||||||||||||| | | | |
Sbjct 121 ATAGAGGAGGAACCGGAAGTAGAAGAGCGAGAGCGGTTAGGAGACTCGCAGATGCAGAAG 180
Query 181 CCAATGTTGGTGAAGGCAAAGATGAAAGTGGAGAAAGGAAAATCAATAGTAAAAGCAAAA 240
||||||||| | ||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 181 CCAATGTTGATTAAGGCTAAGATGAAAGTGGAGAAAGGAAAGGCAATAGTAAAAGCAAAA 240
Query 241 GTGAAGAGTGGGAAA 255
|||||||||||||||
Sbjct 241 GTGAAGAGTGGGAAA 255
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30040858596
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5