BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G26730.1 Length=813 Score E Sequences producing significant alignments: (Bits) Value Ahg351658 jgi|Araly1|351658|fgenesh1_pg.C_scaffold_6002251 793 0.0 > Ahg351658 jgi|Araly1|351658|fgenesh1_pg.C_scaffold_6002251 Length=858 Score = 793 bits (429), Expect = 0.0 Identities = 476/499 (95%), Gaps = 2/499 (0%) Strand=Plus/Plus Query 316 CCACATCTCATATTGAGACATGACAACTACAACCAAACCGACCTCATCTCTGCCATGACC 375 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 361 CCACATCTCATATTGAGACATGACAACTACAACCAAACCGATCTCATCTCTGCCATGACC 420 Query 376 GACATGAGAAGGCAATCTTACAACGGTTTTGTCATCCTTCTTCGTTTCCTCAACGATACA 435 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 421 GACATGAGAAGGCAATCTTACAACGGTTTTGTCATCCTTCTCCGTTTCCTCAACGATACA 480 Query 436 AATTACTTCAGGAACACAGATATTACTTTCTTGATGCCTAGCGACAACGATATTTCTCAT 495 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 AATTACTTCAGGAACACAGATATTACTTTCTTGATGCCTAGCGACAACGATATTTCTCAT 540 Query 496 GCAGACATTACTCCGGAGAGTCTTGAAACATTTATCCTAAAACATACGATCCCTGCTTGG 555 |||||||||||||| |||| |||||| |||||||||||||||||||| ||||| || ||| Sbjct 541 GCAGACATTACTCCAGAGAATCTTGAGACATTTATCCTAAAACATACCATCCCGGCATGG 600 Query 556 CTTATGATCAACCACATGCTTCATTTTCCAAACAGAACTCTTGTTCCTTGTAGCTTCTCT 615 ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 601 CTTATGATCAATCACATGCTTCATTTTCCAAACAGAACTCTTGTTCCTTGTAGCCTCTCT 660 Query 616 GATAGAATGTTCACCATCACAAAATCTGGAGGGTCCGGGATATATGTGAACAACGCGAGG 675 |||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 661 GATAAAATGTTCACCATCACAAAATCTGGAGGGTCCGGGATTTATGTGAACAATGCGAGG 720 Query 676 ATCGTTACTCCTAATGTTTGTCAGAATTCTCGTATATCTTGCCATGGAATCAGCGACGTT 735 || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 721 ATTGTTACTCCTAATGTTTGTCAGAATTCTCGTATATCTTGCCATGGAATCAGTGACGTT 780 Query 736 ATCT-CATTCAACCAAAACTATGTTTCAACGAAAATGTTACCATCAGTTCGTCGAAACAT 794 || | ||||||||||||||||| | ||||||||||||||| |||| |||||||||||||| Sbjct 781 AT-TGCATTCAACCAAAACTATATGTCAACGAAAATGTTATCATCCGTTCGTCGAAACAT 839 Query 795 CACTTCGTCAAAGCATTGA 813 |||||||| ||||||||| Sbjct 840 CACTTCGTTGAAGCATTGA 858 Score = 366 bits (198), Expect = 1e-100 Identities = 237/255 (93%), Gaps = 6/255 (2%) Strand=Plus/Plus Query 7 ATGTGGTGGGTTGTACATCGACGGATGAACAAGCGGAACTTAAACCGTGATTGCGAGAAT 66 |||||||||||||||||||||||||||| |||| |||||||||| |||||||| |||||| Sbjct 1 ATGTGGTGGGTTGTACATCGACGGATGAGCAAGAGGAACTTAAATCGTGATTGTGAGAAT 60 Query 67 AAGAGGATATGTGAGTTGGGGAAAGACTTGGAAGAGATATTAAAGGGGAGGCTCGAGACG 126 |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| Sbjct 61 AAGAGGATATGTGAGTTGGGGAAAGACTTGGAGGAGATACTAAAGGGGAGGCTCGAGACG 120 Query 127 ATAGAGGAGGAACCGGAAGCAGAAGAGCGAGAGCGGTTAGGAGACTCGCA--T--A-A-G 180 ||||||||||||||||||| |||||||||||||||||||||||||||||| | | | | Sbjct 121 ATAGAGGAGGAACCGGAAGTAGAAGAGCGAGAGCGGTTAGGAGACTCGCAGATGCAGAAG 180 Query 181 CCAATGTTGGTGAAGGCAAAGATGAAAGTGGAGAAAGGAAAATCAATAGTAAAAGCAAAA 240 ||||||||| | ||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 181 CCAATGTTGATTAAGGCTAAGATGAAAGTGGAGAAAGGAAAGGCAATAGTAAAAGCAAAA 240 Query 241 GTGAAGAGTGGGAAA 255 ||||||||||||||| Sbjct 241 GTGAAGAGTGGGAAA 255 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30040858596 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5