BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G26740.1
Length=1749
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489487 jgi|Araly1|489487|fgenesh2_kg.6__2621__AT5G26740.1 2675 0.0
Ahg340770 jgi|Araly1|340770|fgenesh1_pg.C_scaffold_3000533 1190 0.0
> Ahg489487 jgi|Araly1|489487|fgenesh2_kg.6__2621__AT5G26740.1
Length=1703
Score = 2675 bits (1448), Expect = 0.0
Identities = 1631/1718 (95%), Gaps = 18/1718 (1%)
Strand=Plus/Plus
Query 33 TTGCTTTGCTGTGATAAAGTTCTCTCCTTTCCTTTCTAAAGGAAGAAGAAAGGCTTTATC 92
||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
Sbjct 1 TTGCTTTGCTGTGATAAAGTTCTCTCCTTTCCTTTCTCAACGAAGAAGAAAGGCTTT-TA 59
Query 93 TCTCAAAACCCTCATCCACAAAATCCCCTTTAATCCGCTAATCAGAGGGTTTTTCTGTTT 152
||||||||||||||||||| |||| || | | || | ||||||||||||||||
Sbjct 60 TCTCAAAACCCTCATCCAC-AAAT-TCC-----T-CTCT--T--GAGGGTTTTTCTGTTT 107
Query 153 TTGTGTTGCTTCGTTACTACGGTTACATTCTTCTCTTCCCCTTTTGATTTCAAAGAACCC 212
||| |||||||||||||||||||||||| |||||||| ||||| || |||||||||||
Sbjct 108 CTGTTTTGCTTCGTTACTACGGTTACATTGTTCTCTTCGCCTTTCCATATCAAAGAACCC 167
Query 213 TCTTGATACCTTAAGAAGAGGCAATTTGAAGTTTTCTTCACAGATCCGTCTTAGCTCTTT 272
| ||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||
Sbjct 168 TATTGATACCTTAAGAAGAGGAAATTTGAAGATTTGTTCACAGATCCGTCTTAGCTCTTT 227
Query 273 CTAGAGAATGGCGGATTTGATACCATTTTATCTGAATATTGTGGCGTTTCTATGTACTGT 332
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 CTTGAGAATGGCGGATTTGATACCATTTTATCTGAATATTGTGGCGTTTCTATGTACTGT 287
Query 333 TGGAGCTATTGCTTTGGCGATATTTCATATCTACAGGCATCTTTTGAATTACACGGAACC 392
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 288 TGGAGCTATTGCTTTGGCTATATTTCATATCTACAGGCATCTTTTGAATTACACGGAACC 347
Query 393 AACTTATCAGAGATATATTGTACGCATTATCTTCATGGTCCCGGTTTATGCCTTCATGTC 452
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 348 AACTTATCAGAGATATATTGTACGCATTATCTTTATGGTTCCGGTTTATGCCTTCATGTC 407
Query 453 ATTCTTGTCTCTTGTGTTACCCAAAAGCTCGATATATTTTGATTCCATACGAGAAGTATA 512
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 408 ATTCTTGTCTCTTGTGTTACCGAAAAGCTCGATATATTTTGATTCCATACGAGAAGTATA 467
Query 513 TGAAGCATGGGTTATCTACAATTTTCTATCGCTGTGTTTGGCATGGGTTGGAGGCCCAGG 572
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 468 TGAAGCATGGGTTATTTACAATTTCCTATCGCTGTGTTTGGCATGGGTTGGAGGCCCAGG 527
Query 573 ATCAGTAGTGCTTAGTTTGAGTGGTCGTTCTTTAAAGCCATCATGGTCTCTTATGACATG 632
||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||
Sbjct 528 ATCAGTAGTGCTTAGTTTGAGTGGTCGCTCTCTAAAGCCATCATGGTCTCTCATGACATG 587
Query 633 TTGCTTTCCGCCTTTAACACTGGACGGGCGATTTATTCGACGATGCAAGCAGGGTTGTCT 692
||||||||||||||||||| |||||||||| |||||| ||||||||||||| ||||||||
Sbjct 588 TTGCTTTCCGCCTTTAACATTGGACGGGCGTTTTATTAGACGATGCAAGCAAGGTTGTCT 647
Query 693 GCAATTTGTAATTCTGAAGCCTATCCTAGTTGCTGTCACACTTGTGCTTTATGCTAAAGG 752
||| ||||| || ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 648 GCAGTTTGTTATCCTGAAGCCTATTCTAGTTGCTGTCACACTTGTGCTTTATGCTAAAGG 707
Query 753 GAAGTACAAGGATGGAAATTTTAACCCTGATCAAGCATATCTCTATCTTACCATCATCTA 812
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 GAAGTACAAGGATGGGAATTTTAACCCTGATCAAGCATATCTCTATCTTACCATCATCTA 767
Query 813 TACCATATCCTACACAGTGGCTTTGTACGCACTTGTGCTGTTTTATATGGCATGCAGAGA 872
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 768 TACCATATCCTACACAGTGGCTTTGTATGCACTTGTGCTGTTTTATATGGCATGCAGAGA 827
Query 873 TCTACTTCAGCCATTCAATCCAGTCCCAAAGTTTGTGATCATAAAGTCTGTGGTCTTTCT 932
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 828 TCTACTTCAGCCATTCAATCCAGTACCAAAGTTTGTGATTATAAAGTCTGTGGTCTTTCT 887
Query 933 AACCTATTGGCAGGGTGTTCTCGTTTTCCTTGCTGCAAAATCTGGATTCATAAAGAGTGC 992
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 CACCTATTGGCAGGGTGTTCTCGTTTTCCTTGCTGCAAAATCTGGATTCATAAAGAGTGC 947
Query 993 AGAGGCAGCAGCTCATTTTCAAAATTTTATAATATGTGTCGAGATGCTCATTGCTGCAGC 1052
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 948 AGAGGCAGCAGCTCATTTCCAAAATTTTATAATATGTGTCGAGATGCTTATTGCTGCAGC 1007
Query 1053 ATGTCATTTCTATGCTTTTCCATACAAGGAGTATGCTGGTGCCAATGTTGGTGGATCTGG 1112
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 ATGCCATTTCTATGCTTTTCCATACAAGGAGTATGCTGGTGCCAATGTTGGTGGATCTGG 1067
Query 1113 CAGTTTCTCAGGAAGCTTATCACATGCTGTAAAACTAAATGACTTTTACCATGACACTGT 1172
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1068 CAGTTTCTCAGGGAGCCTATCACATGCTGTAAAACTAAATGACTTTTACCATGACACTGT 1127
Query 1173 TCACCAGTTTGCTCCTACCTATCACGATTATGTGCTCTATAACCATCAAGATGGTGGTGA 1232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 TCACCAGTTTGCTCCTACCTATCACGATTATGTGCTCTATAACCATCAAGATGGTGGTGA 1187
Query 1233 CGAGGGGACAAAGAAGTACCGATCGAGAACCTTTGTGCCAACTGGCCAAGAGATGGATGC 1292
|||||| |||||||||||||| |||||||| ||||||||||| |||||||| ||||||||
Sbjct 1188 CGAGGGAACAAAGAAGTACCGGTCGAGAACTTTTGTGCCAACAGGCCAAGAAATGGATGC 1247
Query 1293 AATGAGAAAAAACAAACCTGTGTATGCAAACAAGATAGATGGTGTTTCAGTCTCAAGTAG 1352
||||||||| |||||||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct 1248 AATGAGAAAGAACAAACCCGTGTATGCAAACAAGATAGATGGTGTTTCGGTTTCAAGTAG 1307
Query 1353 TCTATCTTCAGAGGCAAGCTCACCTAAAAGCTCCAGCGTAACTTCTGATCCTGCACGCTC 1412
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1308 TCTATCTTCAGAGGCAAGCTCACCAAAAAGCTCTAGCGTAACTTCTGATCCTGCACGCTC 1367
Query 1413 TGATGCTGTGAAATCTTCCTTGCTGGTGGATGCCTCAGATTCTCTTGAAACAATGTATGA 1472
|||||||||||||||||| ||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 1368 TGATGCTGTGAAATCTTCATTGCTCGTGGATGCCTCGGATTCTCTTGATACAATGTATGA 1427
Query 1473 TATGTCGCTCATTGACATTGATCTATCTAGTTTCCCCAGCAATGT-CCCATCTGCAAGTG 1531
|||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1428 TATGTCGCTCATTGACATCGATCTATCTAGTTTCCCCAGCAATGTACCC-TCTGCAAGTG 1486
Query 1532 AAAGTGGGCCTAGATAGGAGCAGAGAAAATGTAGAAATCACCATTAACAGGTACAAAACA 1591
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1487 AAAGTGGGCCTAGATAGGAGCAGACAAGATGTAGAAATCACCATTAACAGGTACAAAACA 1546
Query 1592 TGCTCCTAATAGTTGTATTCAGATGAATCTTCTGAGGTGTGTTCTTAGTTGGA-A-GATG 1649
||||||||||||||| |||||| |||||| ||||||||||||||||||||||| | ||||
Sbjct 1547 TGCTCCTAATAGTTGGATTCAGGTGAATCATCTGAGGTGTGTTCTTAGTTGGAGAAGATG 1606
Query 1650 TTGTTAGTTGGAGACTTGAGGATAAATGAAAAAAGCTTATAAACCCATTTACCTTTTGTA 1709
|||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1607 TTGTTAGTTGGAGACTCGAGGATAAATGAAAAA-GCTTATAAAACCATTTACCTTTTGTA 1665
Query 1710 GCTTTATACAATGAGTCTTCTACTGCCATATTCTTTTG 1747
||||||||||||||||||||||||| ||| ||||||||
Sbjct 1666 GCTTTATACAATGAGTCTTCTACTGGCATTTTCTTTTG 1703
> Ahg340770 jgi|Araly1|340770|fgenesh1_pg.C_scaffold_3000533
Length=1260
Score = 1190 bits (644), Expect = 0.0
Identities = 1069/1272 (84%), Gaps = 38/1272 (3%)
Strand=Plus/Plus
Query 280 ATGGCGGATTTGATA-CCATTTTATCTGAATATTGTGGCGTTTCTATGTACTGTTGGAGC 338
|||||||||||| || ||| |||| || | ||| || || |||||||| ||||| |||||
Sbjct 1 ATGGCGGATTTGCTACCCA-TTTACCTCATTATCGTAGCATTTCTATGCACTGTCGGAGC 59
Query 339 TATTGCTTTGGCGATATTTCATATCTACAGGCATCTTTTGAATTACACGGAACCAACTTA 398
||||||||||| | ||||||||||||| ||| || ||||| || |||||||| | |||
Sbjct 60 CATTGCTTTGGCTTTGTTTCATATCTACAAGCACCTATTGAACTATACGGAACCCATTTA 119
Query 399 TCAGAGATATATTGTACGCATTATCTTCATGGTCCCGGTTTATGCCTTCATGTCATTCTT 458
||||||||||||||| ||||| |||||||||||||||| |||||||| |||||||||||
Sbjct 120 TCAGAGATATATTGTGCGCATCGTCTTCATGGTCCCGGTCTATGCCTTGATGTCATTCTT 179
Query 459 GTCTCTTGTGTTACCCAAAAGCTCGATATATTTTGATTCCATACGAGAAGTATATGAAGC 518
| |||| || || ||||| ||||| ||||||||| | || || || ||||| ||||||||
Sbjct 180 GGCTCTCGTTTTGCCCAAGAGCTCTATATATTTTAACTCTATCCGTGAAGTTTATGAAGC 239
Query 519 ATGGGTTATCTACAATTTTCTATCGCTGTGTTTGGCATGGGTTGGAGGCCCAGGATCAGT 578
|||||| || || ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 240 ATGGGTGATTTATAATTTTCTATCGCTGTGTTTGGCATGGGTTGGAGGCCCAGGTTCAGT 299
Query 579 AGTGCTTAGTTTGAGTGGTCGTTCTTTAAAGCCATCATGGTC-TCTTATGACATGTTGCT 637
||| | ||||| | |||||| ||| | |||||||| ||| | ||| |||||||||||||
Sbjct 300 AGTTATAAGTTTAACTGGTCGATCTCTGAAGCCATCGTGG-CATCTCATGACATGTTGCT 358
Query 638 TTCCGCCTTTAACACTGGACGGGCGATTTATTCGACGATGCAAGCAGGGTTGTCTGCAAT 697
| || || || || | |||||||| ||||||||||| |||||||| |||||| ||||||
Sbjct 359 TCCCTCCACTACCATTAGACGGGCGTTTTATTCGACGGTGCAAGCAAGGTTGTTTGCAAT 418
Query 698 TTGTAATTCTGAAGCCTATCCTAGTTGCTGTCACACTTGTGCTTTATGCTAAAGGGAAGT 757
|||| ||||| ||||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct 419 TTGTTATTCTAAAGCCAATCCTAGTTGCTGTCACACTTGTGCTTTATGCAAAAGGGAAAT 478
Query 758 ACAAGGATGGAAATTTTAACCCTGATCAAGCATATCTCTATCTTACCATCATCTATACCA 817
|||||||||||||||| | |||||| ||| | |||||||||||||||||||||||||| |
Sbjct 479 ACAAGGATGGAAATTTCAGCCCTGACCAATCCTATCTCTATCTTACCATCATCTATACAA 538
Query 818 TATCCTACACAGTGGCTTTGTACGCACTTGTGCTGTTTTATATGGCATGCAGAGATCTAC 877
|||| |||||||| ||||||||||| || || || |||||| ||||||||| |||||| |
Sbjct 539 TATCATACACAGTAGCTTTGTACGCGCTGGTCCTCTTTTATGTGGCATGCAAAGATCTGC 598
Query 878 TTCAGCCATTCAATCCAGTCCCAAAGTTTGTGATCATAAAGTCTGTGGTCTTTCTAACCT 937
||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||
Sbjct 599 TTCAGCCATTCAATCCAGTCCCAAAATTTGTGATTATAAAGTCTGTCGTCTTTCTAACCT 658
Query 938 ATTGGCAGGGTGTTCTCGTTTTCCTTGCTGCAAAATCTGGATTCATAAAG-AGTGCAGAG 996
|||||||||||||||| ||||||||| ||| ||||||||||| |||| | | || |||
Sbjct 659 ATTGGCAGGGTGTTCTAGTTTTCCTTTTTGCTAAATCTGGATTTATAAGGGA-TGAAGAA 717
Query 997 GCAGCAGCTCATTTTC-AAAATTTTATAATATGTGTCGAGATGCTCATTGCTGCAGCATG 1055
| |||||| | | ||| ||||||||||||||||||| || ||||| ||||||||||| ||
Sbjct 718 GAAGCAGCGC-TCTTCCAAAATTTTATAATATGTGTGGAAATGCTTATTGCTGCAGC-TG 775
Query 1056 -TCATTTCTATGCTTTTCCATACAAGGAGTATGCTG-GTGCCAATGTTGGTGGATCTGGC 1113
|||||||||||| ||||| |||||||| ||||| | | |||||||| || ||| || ||
Sbjct 776 CTCATTTCTATGCATTTCCGTACAAGGAATATGCAGAG-GCCAATGTGGGAGGAGCTCGC 834
Query 1114 AGTTTCTCAGGAAG-CTTATCACATGCTGTAAAACTAAATGACTTT-TACCATGACACTG 1171
|||||||||||||| || |||||||| | | |||||||| ||| |||||||| ||||
Sbjct 835 AGTTTCTCAGGAAGTCTGG-CACATGCTCTTATGCTAAATGA-TTTCTACCATGATACTG 892
Query 1172 TTCACCAGTTTGCTCCTACCTATCACGATTATGTGCTCTATAACCATCAA-GATGGTGGT 1230
||||||||||||| || || ||||||||||||||||||||||| ||| || |||||||||
Sbjct 893 TTCACCAGTTTGCCCCAACATATCACGATTATGTGCTCTATAATCAT-AATGATGGTGGT 951
Query 1231 GACGAGGGGACAAAGAAGTACCGATCGAGAACCTTTGTGCCAACTGGCCAAGAGATGGAT 1290
|| || ||||||| |||||||||| | ||||| |||||||||||||| || || ||||||
Sbjct 952 GAGGAAGGGACAAGGAAGTACCGAGCAAGAACATTTGTGCCAACTGGTCAGGAAATGGAT 1011
Query 1291 GCAATGAGAAAAAACAAAC-C-TGTGTATGCAAACAAGATAGATGGTGTTTCAGTCTCAA 1348
|| | ||||| ||||| | | ||| | || ||||||||||||||||||||| |||||
Sbjct 1012 GCTGTCAGAAAGAACAAGCACATGT-T-TGGAAACAAGATAGATGGTGTTTCGGTCTC-- 1067
Query 1349 GTAGTCTATCTTCAGAGGCAAGCTCACCTAAAAGCTCCAGCGTAACTTCTGATCCTGCAC 1408
||||| ||||||||| ||||| |||| |||| ||| | || |||||| |||
Sbjct 1068 -TAGTCAATCTTCAGAAACAAGCACACCCAAAACCTCT-G-GT-------GATCCTTCAC 1117
Query 1409 GCTCTGAT-GCTGTGAAATCTTCCTTGCTGGTGGATGCCTCAGATTCTCTTGAAACAATG 1467
|| |||| || ||||||||||||||||||| ||||||||||| || || ||||||
Sbjct 1118 GCCCTGAGAGCA-TGAAATCTTCCTTGCTGGTAGATGCCTCAGACTCGGTTTCCACAATG 1176
Query 1468 TATGATATGTCGCTCATTGACATTGATCTATCTAGTTTCCCCAGCAATGTCCCATCTGCA 1527
||||| |||||||| |||||||| ||| |||| || | ||| ||||| || || | ||||
Sbjct 1177 TATGACATGTCGCTAATTGACATCGATATATCGAGCTACCCAAGCAAGGTACCTTTTGCA 1236
Query 1528 AGTGA-AAGTGG 1538
| | | ||||||
Sbjct 1237 AAT-ATAAGTGG 1247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65629492135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5