BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G26749.2

Length=799
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg942252 jgi|Araly1|942252|scaffold_602796.1                        355    3e-97


> Ahg942252 jgi|Araly1|942252|scaffold_602796.1
Length=481

 Score =  355 bits (192),  Expect = 3e-97
 Identities = 242/266 (91%), Gaps = 3/266 (1%)
 Strand=Plus/Plus

Query  284  AATTTTTGCCCATTTGGAGATTCTTGCAGATACTTCCATCCTAACAACAATACAGGAAGC  343
            |||||||| ||||| |||||||||||||||||||| || ||||| |||||| ||||||||
Sbjct  219  AATTTTTGTCCATTCGGAGATTCTTGCAGATACTTTCACCCTAATAACAATCCAGGAAGC  278

Query  344  ACAGGATTCACAAATAATACACAACTTCGTGTTGACATGCTTAACCAACAACACATCCAA  403
            ||||||||  |||||||||||||||||| || ||| |||||||| |  ||||||||| ||
Sbjct  279  ACAGGATTTGCAAATAATACACAACTTCATGGTGATATGCTTAA-C--CAACACATCGAA  335

Query  404  GGAAGTACTTTAAACCGTGATTTTGTTAGTGGGAGACCAGGAACAGGTTGGTTTGATCTT  463
            |||||||| ||||||||||||| ||||||||||||||||||| | |||||||||||||||
Sbjct  336  GGAAGTACCTTAAACCGTGATTATGTTAGTGGGAGACCAGGAGCTGGTTGGTTTGATCTT  395

Query  464  CCGCCATCGCTAAAACCGCCTCCTGAGCAAGGCTATCCTCAGCTTCCCTTCATAGACTGG  523
            |||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  396  CCGCCATCTCTGAAACCGCCTCCTGAGCATGGCTATCCTCAGCTTCCCTTCATAGACTGG  455

Query  524  GGATAGATATAAATTCTCTGAATAAT  549
            ||||||| ||||||||||||| ||||
Sbjct  456  GGATAGAGATAAATTCTCTGAGTAAT  481


 Score =  351 bits (190),  Expect = 3e-96
 Identities = 209/218 (96%), Gaps = 1/218 (0%)
 Strand=Plus/Plus

Query  10   TCGTCGTCATCGCC-GGAAGATGCCGTCGGGGAAATATTACTGTGATTATTGCGAGAAAG  68
            ||||| |||||||| | |||||||||||||||||||||||||||||||| ||||| ||||
Sbjct  1    TCGTCTTCATCGCCAGAAAGATGCCGTCGGGGAAATATTACTGTGATTACTGCGACAAAG  60

Query  69   AGTTTCAAGACACTCAAGTCGCTAGAAAACGCCATCTTCAAAGCAAACCTCATCTTCGAG  128
            ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct  61   AGTTTCAAGACACTCAAGTAGCAAGAAAACGCCATCTTCAAAGCAAACCTCATCTTCGAG  120

Query  129  CTAAAGCCCTTTGGTACAGTTCTTCTTCCTCAGATCTTGTTAATCCACAAGTCTCCAATT  188
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  121  CTAAAGCCCTTTGGTACAGTTCTTCTTCCTCAGATCTTATTAATCCACAAGTCTCCAATT  180

Query  189  TTGCGACGAAAGGTCTCTGCAATCGATTCATTACCTCG  226
            |||||||||||||||| |||||||||||||||||||||
Sbjct  181  TTGCGACGAAAGGTCTGTGCAATCGATTCATTACCTCG  218



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29507137758


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5