BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G26770.2
Length=1446
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326902 jgi|Araly1|326902|fgenesh1_pm.C_scaffold_6002122 1550 0.0
Ahg340760 jgi|Araly1|340760|fgenesh1_pg.C_scaffold_3000523 529 3e-149
> Ahg326902 jgi|Araly1|326902|fgenesh1_pm.C_scaffold_6002122
Length=3444
Score = 1550 bits (839), Expect = 0.0
Identities = 932/978 (95%), Gaps = 2/978 (0%)
Strand=Plus/Plus
Query 284 ATGTCGGATTCCGTCAAAACGACGGTGGATCCGCTTTTGAAAGATTTGGATGGGAAAAAA 343
||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1 ATGTCAGATTCCGTCAAAACGACGGTGGATCCGCTTTTGAAAGATTTAGATGGTAAAAAA 60
Query 344 GAGAGTTTCAGGCGGAACGTTGTGTCTATGGCAGCTGAG-TTAAAGCAAGTGAGAGGTCG 402
|||||||| ||| | ||||| ||||||||||| |||||| || |||||||||||||||||
Sbjct 61 GAGAGTTTTAGGAGAAACGTGGTGTCTATGGCGGCTGAGCTT-AAGCAAGTGAGAGGTCG 119
Query 403 TTTGGTTTCTCAAGAACAATTCTTTGTTAAAGAAAGCTTTTGTAGAAAAGAAGCAGAGAA 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TTTGGTTTCTCAAGAACAATTCTTTGTTAAAGAAAGCTTTTGTAGAAAAGAAGCAGAGAA 179
Query 463 GAAAGCTAAGAACATGGAAATGGAGATCTGTAAATTGCAGAAGAAGTTGGAAGATAGAAA 522
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 180 GAAAGCTAAGAATATGGAAATGGAGATCTGTAAATTGCAGAAGAAATTGGAAGATAGAAA 239
Query 523 TTGTGAGCTTGTAGCTTCAACTTCTGCTGCTGAAAAGTTTCTAGAAGAAGTGGACGATCT 582
||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 240 TTGTGAGCTTGAAGCTTCTACTTCTGCTGCTGAAAAGTTTCTTGAAGAAGTGGACGATCT 299
Query 583 GAGATCACAGCTAGCTTTAACAAAGGACATTGCAGAAACAAGTGCTGCTTCTGCTCAATC 642
|||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 300 GAGATCGCAGCTAGCTTTAACAAAGGAAATTGCAGAAACAAGCGCTGCTTCTGCTCAATC 359
Query 643 CGCACAGCTTCAATGCTCAGTGCTAACAGAACAACTTGACGACAAAACACGTTCTCTAAG 702
|||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||
Sbjct 360 CGCACAGCTTCAATGCTCGGTGCTAACAGAACAACTTGACGACAAAACACGATATCTAAG 419
Query 703 AGAACACGAAGACCGTGTAACTCATCTCGGTCACCAGCTTGATAATCTTCAGAGAGATTT 762
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 420 AGAACACGAAGACCGTGTAACTCAGCTCGGTCACCAGCTTGATAACCTTCAGAGAGATTT 479
Query 763 GAAGACAAGAGAATGTTCTCAAAAACAGCTGAGAGAGGAAGTTATGAGAATCGAGCGTGA 822
|| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 480 GAGGACAAGAGAATGTTCTCAAAAACAGCTTAGAGAAGAAGTTATGAGAATCGAGCGTGA 539
Query 823 GATAACTGAAGCTGTTGCAAAGTCTGGGAAAGGCACAGAATGTGAGCTCAGGAAACTTCT 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GATAACTGAAGCTGTTGCAAAGTCTGGGAAAGGCACAGAATGTGAGCTCAGGAAACTTCT 599
Query 883 TGAAGAGGTTTCTCCAAAGAACTTTGAGAGAATGAACATGTTATTGGCGGTAAAAGACGA 942
|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 600 GGAAGAGGTTTCTCCAAAGAATTTTGAGAGAATGAACAAGTTATTGGCGGTAAAAGACGA 659
Query 943 AGAGATTGCAAAGTTAAAAGATGATGTGAAGTTAATGTCAGCTCATTGGAAACTCAAAAC 1002
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 660 AGAGATTGCAAAATTAAAAGATGATGTAAAGTTAATGTCAGCTCATTGGAAACTCAAGAC 719
Query 1003 TAAGGAACTTGAATCTCAGTTGGAGAGACAAAGAAGAGCAGATCAAGAGTTGAAGAAGAA 1062
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TAAAGAACTTGAATCTCAGCTGGAGAGACAAAGAAGAGCAGATCAAGAGTTGAAGAAGAA 779
Query 1063 GGTACTGAAACTAGAGTTTTGCCTGCAAGAAGCTCGTAGTCAGACAAGAAAGCTACAGAG 1122
||| |||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct 780 GGTCCTGAAACTGGAGTTCTGTCTGCAAGAAGCTCGTAGCCAGACAAGAAAGCTACAGAG 839
Query 1123 GGCGGGGGAGAGACGAGACAAGGCAATCAAAGAGCTAAGTGATCAGATTACTGGAAAACA 1182
|||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||| |
Sbjct 840 GGCGGGGGAGAGGCGAGACAAGGCAATCAAAGAGCTAAGGGATCAGATTACCGGAAAAGA 899
Query 1183 GTTGAATGAATCGGTTTCAGGGGAGAAACAAAACTTCTGGGATACTTCAGGGTTCAAGAT 1242
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 900 GTTGAATGAATCGGTTTCAAGGGAGAAACCAAACTTCTGGGATACTTCAGGGTTCAAGAT 959
Query 1243 CGTTGTGTCAATGTCGAT 1260
||| ||||||||||||||
Sbjct 960 CGTCGTGTCAATGTCGAT 977
> Ahg340760 jgi|Araly1|340760|fgenesh1_pg.C_scaffold_3000523
Length=1053
Score = 529 bits (286), Expect = 3e-149
Identities = 591/732 (81%), Gaps = 45/732 (6%)
Strand=Plus/Plus
Query 584 AGATCACAGCTAGCTTTAACAAAGGACATTGCAGAAACAAGTGCTGCTTCTGCTCAATCC 643
|||||| |||| | | ||| ||| | || ||||| ||||||||| ||||||||||||
Sbjct 343 AGATCAAAGCTTGATGCAACCAAGCAAATAGCAGAGGCAAGTGCTGATTCTGCTCAATCT 402
Query 644 GCACAGCTTCAATGCTCAGTGCTAACAG-AACAACTTGACGACAAAACACGTTCTCTAAG 702
||||| | ||||||||| |||||| || |||||||||||||||||||||||||||| ||
Sbjct 403 ACACAGATCCAATGCTCAATGCTAA-AGAAACAACTTGACGACAAAACACGTTCTCTCAG 461
Query 703 AGAACACGAAGACCGTGTAACTCATCTCGGTCACCAGCTTGATAATCTTCAGAGAGATTT 762
|||||||||||||||||| ||||| |||||||| ||||||||| |||| ||||||| | |
Sbjct 462 AGAACACGAAGACCGTGTGACTCAGCTCGGTCATCAGCTTGATGATCTACAGAGAGGTCT 521
Query 763 GAAGACA-AGAGAATGTTCTCA-AAAA-CAGCTGAGAGAGGAAGTTATGAGAATCGAGCG 819
|| | | ||||| || |||| |||| ||||| ||||| ||||||| ||||||||||||
Sbjct 522 GA-GCCTGAGAGAGTG--CTCAGAAAAGCAGCTCAGAGAAGAAGTTAAGAGAATCGAGCG 578
Query 820 TGAGATAACTGAAG-CTGTTGC-AAAGTCTGGGA-A-A-GGCACAGAATGTGAGCT-CAG 873
|||||||| || | | || | |||| |||||| | | |||| || || ||||| |||
Sbjct 579 GGAGATAACAGA-GTCCATTACGAAAG-CTGGGATAGATGGCATGGACTGCGAGCTGCAG 636
Query 874 GAAACTTCTTGAAGAGGTTTCTCCAAAGAACTTTGAGA-GAATGAACATGTTA-TTGGCG 931
|||||||| ||||| || ||||||| ||| ||||||| || |||| | | || ||| |
Sbjct 637 -AAACTTCTAGAAGATGTCTCTCCAATGAAATTTGAGAAGA-TGAATAGGCTAGTTGAAG 694
Query 932 GTAAAAGACGAAGAGATTGCAAAGTTAAAAGATGATG-TGAAG-TTAATGTCAGCTCATT 989
||||||||||||||||| |||| | |||||||| | | ||| |||||||||| ||| |
Sbjct 695 -TAAAAGACGAAGAGATTACAAAACTGAAAGATGA-GAT-AAGGTTAATGTCAGGTCACT 751
Query 990 GGAAACTCAAAACTAAGGAACTTGAATCTCAGTTGGAGAGACAAAGAAGAGCAGATCAAG 1049
|||||| ||| ||||||||||| ||||||||| |||| | ||| |||||| | |||||||
Sbjct 752 GGAAACACAAGACTAAGGAACTCGAATCTCAGCTGGAAAAACAGAGAAGAACTGATCAAG 811
Query 1050 AGT-TGAAGAAGAAGGTACTGAAACTAGAGTTTTGCCTGCAAGAAGCTCGTAGTCAGACA 1108
| | |||||||||||||||||||||||||||| || || ||||||||| | || |||||
Sbjct 812 A-TCTGAAGAAGAAGGTACTGAAACTAGAGTTCTGTCTACAAGAAGCTAGAAGCCAGACT 870
Query 1109 AGAAAGCTACAGAGGGCGGGGGAGAGACGAGACAAGGCA-ATCAAAGAGCTAAGTGATCA 1167
|||||||| |||||| ||||| ||| | || | || | ||||||||| |||| ||||
Sbjct 871 AGAAAGCTGCAGAGGAAAGGGGAAAGAAGGGATATGG-AGATCAAAGAGATAAGAGATCT 929
Query 1168 GAT-TACTG-GAAA-A-CAG-TTGAATGAATCG-GT-TTCAGGGGAGAAACAAAACTTCT 1220
||| | | | |||| | ||| || || ||| | || || ||| | ||||| || ||||
Sbjct 930 GATAT-CGGAGAAACAACAGCTT-AAC-AAT-GAGTCTT--GGG-ATAAACAGAAGTTCT 982
Query 1221 GGGATACTTCAGGGTTCAAGATCGTTGTGTCAATGTCGATGTTGATATTAGTTATTA-TC 1279
|||| | |||||||||||||||||||||||||||||| |||||||| ||||| | | ||
Sbjct 983 GGGACAATTCAGGGTTCAAGATCGTTGTGTCAATGTCTATGTTGATGTTAGTGGT-AGTC 1041
Query 1280 TCCAAAAGATGA 1291
||||| ||||||
Sbjct 1042 TCCAAGAGATGA 1053
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54088147900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5