BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G26770.2 Length=1446 Score E Sequences producing significant alignments: (Bits) Value Ahg326902 jgi|Araly1|326902|fgenesh1_pm.C_scaffold_6002122 1550 0.0 Ahg340760 jgi|Araly1|340760|fgenesh1_pg.C_scaffold_3000523 529 3e-149 > Ahg326902 jgi|Araly1|326902|fgenesh1_pm.C_scaffold_6002122 Length=3444 Score = 1550 bits (839), Expect = 0.0 Identities = 932/978 (95%), Gaps = 2/978 (0%) Strand=Plus/Plus Query 284 ATGTCGGATTCCGTCAAAACGACGGTGGATCCGCTTTTGAAAGATTTGGATGGGAAAAAA 343 ||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 1 ATGTCAGATTCCGTCAAAACGACGGTGGATCCGCTTTTGAAAGATTTAGATGGTAAAAAA 60 Query 344 GAGAGTTTCAGGCGGAACGTTGTGTCTATGGCAGCTGAG-TTAAAGCAAGTGAGAGGTCG 402 |||||||| ||| | ||||| ||||||||||| |||||| || ||||||||||||||||| Sbjct 61 GAGAGTTTTAGGAGAAACGTGGTGTCTATGGCGGCTGAGCTT-AAGCAAGTGAGAGGTCG 119 Query 403 TTTGGTTTCTCAAGAACAATTCTTTGTTAAAGAAAGCTTTTGTAGAAAAGAAGCAGAGAA 462 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 TTTGGTTTCTCAAGAACAATTCTTTGTTAAAGAAAGCTTTTGTAGAAAAGAAGCAGAGAA 179 Query 463 GAAAGCTAAGAACATGGAAATGGAGATCTGTAAATTGCAGAAGAAGTTGGAAGATAGAAA 522 |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 180 GAAAGCTAAGAATATGGAAATGGAGATCTGTAAATTGCAGAAGAAATTGGAAGATAGAAA 239 Query 523 TTGTGAGCTTGTAGCTTCAACTTCTGCTGCTGAAAAGTTTCTAGAAGAAGTGGACGATCT 582 ||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 240 TTGTGAGCTTGAAGCTTCTACTTCTGCTGCTGAAAAGTTTCTTGAAGAAGTGGACGATCT 299 Query 583 GAGATCACAGCTAGCTTTAACAAAGGACATTGCAGAAACAAGTGCTGCTTCTGCTCAATC 642 |||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 300 GAGATCGCAGCTAGCTTTAACAAAGGAAATTGCAGAAACAAGCGCTGCTTCTGCTCAATC 359 Query 643 CGCACAGCTTCAATGCTCAGTGCTAACAGAACAACTTGACGACAAAACACGTTCTCTAAG 702 |||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||| Sbjct 360 CGCACAGCTTCAATGCTCGGTGCTAACAGAACAACTTGACGACAAAACACGATATCTAAG 419 Query 703 AGAACACGAAGACCGTGTAACTCATCTCGGTCACCAGCTTGATAATCTTCAGAGAGATTT 762 |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 420 AGAACACGAAGACCGTGTAACTCAGCTCGGTCACCAGCTTGATAACCTTCAGAGAGATTT 479 Query 763 GAAGACAAGAGAATGTTCTCAAAAACAGCTGAGAGAGGAAGTTATGAGAATCGAGCGTGA 822 || ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 480 GAGGACAAGAGAATGTTCTCAAAAACAGCTTAGAGAAGAAGTTATGAGAATCGAGCGTGA 539 Query 823 GATAACTGAAGCTGTTGCAAAGTCTGGGAAAGGCACAGAATGTGAGCTCAGGAAACTTCT 882 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 GATAACTGAAGCTGTTGCAAAGTCTGGGAAAGGCACAGAATGTGAGCTCAGGAAACTTCT 599 Query 883 TGAAGAGGTTTCTCCAAAGAACTTTGAGAGAATGAACATGTTATTGGCGGTAAAAGACGA 942 |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| Sbjct 600 GGAAGAGGTTTCTCCAAAGAATTTTGAGAGAATGAACAAGTTATTGGCGGTAAAAGACGA 659 Query 943 AGAGATTGCAAAGTTAAAAGATGATGTGAAGTTAATGTCAGCTCATTGGAAACTCAAAAC 1002 |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 660 AGAGATTGCAAAATTAAAAGATGATGTAAAGTTAATGTCAGCTCATTGGAAACTCAAGAC 719 Query 1003 TAAGGAACTTGAATCTCAGTTGGAGAGACAAAGAAGAGCAGATCAAGAGTTGAAGAAGAA 1062 ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 720 TAAAGAACTTGAATCTCAGCTGGAGAGACAAAGAAGAGCAGATCAAGAGTTGAAGAAGAA 779 Query 1063 GGTACTGAAACTAGAGTTTTGCCTGCAAGAAGCTCGTAGTCAGACAAGAAAGCTACAGAG 1122 ||| |||||||| ||||| || ||||||||||||||||| |||||||||||||||||||| Sbjct 780 GGTCCTGAAACTGGAGTTCTGTCTGCAAGAAGCTCGTAGCCAGACAAGAAAGCTACAGAG 839 Query 1123 GGCGGGGGAGAGACGAGACAAGGCAATCAAAGAGCTAAGTGATCAGATTACTGGAAAACA 1182 |||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||| | Sbjct 840 GGCGGGGGAGAGGCGAGACAAGGCAATCAAAGAGCTAAGGGATCAGATTACCGGAAAAGA 899 Query 1183 GTTGAATGAATCGGTTTCAGGGGAGAAACAAAACTTCTGGGATACTTCAGGGTTCAAGAT 1242 ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| Sbjct 900 GTTGAATGAATCGGTTTCAAGGGAGAAACCAAACTTCTGGGATACTTCAGGGTTCAAGAT 959 Query 1243 CGTTGTGTCAATGTCGAT 1260 ||| |||||||||||||| Sbjct 960 CGTCGTGTCAATGTCGAT 977 > Ahg340760 jgi|Araly1|340760|fgenesh1_pg.C_scaffold_3000523 Length=1053 Score = 529 bits (286), Expect = 3e-149 Identities = 591/732 (81%), Gaps = 45/732 (6%) Strand=Plus/Plus Query 584 AGATCACAGCTAGCTTTAACAAAGGACATTGCAGAAACAAGTGCTGCTTCTGCTCAATCC 643 |||||| |||| | | ||| ||| | || ||||| ||||||||| |||||||||||| Sbjct 343 AGATCAAAGCTTGATGCAACCAAGCAAATAGCAGAGGCAAGTGCTGATTCTGCTCAATCT 402 Query 644 GCACAGCTTCAATGCTCAGTGCTAACAG-AACAACTTGACGACAAAACACGTTCTCTAAG 702 ||||| | ||||||||| |||||| || |||||||||||||||||||||||||||| || Sbjct 403 ACACAGATCCAATGCTCAATGCTAA-AGAAACAACTTGACGACAAAACACGTTCTCTCAG 461 Query 703 AGAACACGAAGACCGTGTAACTCATCTCGGTCACCAGCTTGATAATCTTCAGAGAGATTT 762 |||||||||||||||||| ||||| |||||||| ||||||||| |||| ||||||| | | Sbjct 462 AGAACACGAAGACCGTGTGACTCAGCTCGGTCATCAGCTTGATGATCTACAGAGAGGTCT 521 Query 763 GAAGACA-AGAGAATGTTCTCA-AAAA-CAGCTGAGAGAGGAAGTTATGAGAATCGAGCG 819 || | | ||||| || |||| |||| ||||| ||||| ||||||| |||||||||||| Sbjct 522 GA-GCCTGAGAGAGTG--CTCAGAAAAGCAGCTCAGAGAAGAAGTTAAGAGAATCGAGCG 578 Query 820 TGAGATAACTGAAG-CTGTTGC-AAAGTCTGGGA-A-A-GGCACAGAATGTGAGCT-CAG 873 |||||||| || | | || | |||| |||||| | | |||| || || ||||| ||| Sbjct 579 GGAGATAACAGA-GTCCATTACGAAAG-CTGGGATAGATGGCATGGACTGCGAGCTGCAG 636 Query 874 GAAACTTCTTGAAGAGGTTTCTCCAAAGAACTTTGAGA-GAATGAACATGTTA-TTGGCG 931 |||||||| ||||| || ||||||| ||| ||||||| || |||| | | || ||| | Sbjct 637 -AAACTTCTAGAAGATGTCTCTCCAATGAAATTTGAGAAGA-TGAATAGGCTAGTTGAAG 694 Query 932 GTAAAAGACGAAGAGATTGCAAAGTTAAAAGATGATG-TGAAG-TTAATGTCAGCTCATT 989 ||||||||||||||||| |||| | |||||||| | | ||| |||||||||| ||| | Sbjct 695 -TAAAAGACGAAGAGATTACAAAACTGAAAGATGA-GAT-AAGGTTAATGTCAGGTCACT 751 Query 990 GGAAACTCAAAACTAAGGAACTTGAATCTCAGTTGGAGAGACAAAGAAGAGCAGATCAAG 1049 |||||| ||| ||||||||||| ||||||||| |||| | ||| |||||| | ||||||| Sbjct 752 GGAAACACAAGACTAAGGAACTCGAATCTCAGCTGGAAAAACAGAGAAGAACTGATCAAG 811 Query 1050 AGT-TGAAGAAGAAGGTACTGAAACTAGAGTTTTGCCTGCAAGAAGCTCGTAGTCAGACA 1108 | | |||||||||||||||||||||||||||| || || ||||||||| | || ||||| Sbjct 812 A-TCTGAAGAAGAAGGTACTGAAACTAGAGTTCTGTCTACAAGAAGCTAGAAGCCAGACT 870 Query 1109 AGAAAGCTACAGAGGGCGGGGGAGAGACGAGACAAGGCA-ATCAAAGAGCTAAGTGATCA 1167 |||||||| |||||| ||||| ||| | || | || | ||||||||| |||| |||| Sbjct 871 AGAAAGCTGCAGAGGAAAGGGGAAAGAAGGGATATGG-AGATCAAAGAGATAAGAGATCT 929 Query 1168 GAT-TACTG-GAAA-A-CAG-TTGAATGAATCG-GT-TTCAGGGGAGAAACAAAACTTCT 1220 ||| | | | |||| | ||| || || ||| | || || ||| | ||||| || |||| Sbjct 930 GATAT-CGGAGAAACAACAGCTT-AAC-AAT-GAGTCTT--GGG-ATAAACAGAAGTTCT 982 Query 1221 GGGATACTTCAGGGTTCAAGATCGTTGTGTCAATGTCGATGTTGATATTAGTTATTA-TC 1279 |||| | |||||||||||||||||||||||||||||| |||||||| ||||| | | || Sbjct 983 GGGACAATTCAGGGTTCAAGATCGTTGTGTCAATGTCTATGTTGATGTTAGTGGT-AGTC 1041 Query 1280 TCCAAAAGATGA 1291 ||||| |||||| Sbjct 1042 TCCAAGAGATGA 1053 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54088147900 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5