BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G26780.3
Length=2072
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489509 jgi|Araly1|489509|fgenesh2_kg.6__2643__AT5G26780.3 1838 0.0
Ahg490821 jgi|Araly1|490821|fgenesh2_kg.7__254__AT4G37930.1 726 0.0
> Ahg489509 jgi|Araly1|489509|fgenesh2_kg.6__2643__AT5G26780.3
Length=1920
Score = 1838 bits (995), Expect = 0.0
Identities = 1090/1137 (96%), Gaps = 1/1137 (0%)
Strand=Plus/Plus
Query 90 AGAGaaaaaaaaaaaaTGGCGTTGGCTCTTCGTAGACTCTCCTCTTCCGTTAAGAAACCG 149
|||| || || |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 38 AGAG-AAGAAGAAAAATGGCGTTGGCTCTTCGTAGACTCTCGTCTTCCGTTAAGAAACCG 96
Query 150 ATCTCGCTTCTCTCCTCTAATGGCGGTTCACTCCGTTTCATGTCGTCTTTATCAACCGCA 209
||||||||||| || |||||||||| ||| |||||||||||||||||||||||| || ||
Sbjct 97 ATCTCGCTTCTTTCTTCTAATGGCGATTCTCTCCGTTTCATGTCGTCTTTATCATCCTCA 156
Query 210 GCTATGGCGGAATCGGAGAAATCTCGTTCTAGTTGGATTAAGCAATTGAATGCATCTCTA 269
||||||||||| || |||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 157 GCTATGGCGGAGTCCGAGAAATCTCGTTCCAGTTGGATTAAGCAATTGAATGGATCTCTA 216
Query 270 GATGAAATCGATCCTGAAGTTGCGGATATTATCGAATTAGAGAAGGCTAGACAATGGAAG 329
|| ||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 217 GAAGAAATCGATCCCGAAGTTGCGGATATTATCGAATTAGAGAAAGCTAGGCAATGGAAG 276
Query 330 GGATTTGAACTTATACCGTCAGAGAATTTCACTTCTCTATCTGTGATGCAAGCCGTTGGT 389
||||||||||||||||| |||||||||||||| ||||| || || |||||||| ||||||
Sbjct 277 GGATTTGAACTTATACCTTCAGAGAATTTCACCTCTCTCTCGGTTATGCAAGCGGTTGGT 336
Query 390 TCTGTTATGACTAATAAGTATAGTGAAGGATACCCTGGAGCTAGATACTATGGAGGAAAT 449
|| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 337 TCGGTTATGACTAATAAGTATAGTGAAGGATATCCTGGTGCTAGATACTATGGAGGAAAT 396
Query 450 GAGTACATTGACATGGCTGAGACATTATGTCAAAAACGCGCATTAGAAGCTTTTCAGTTA 509
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 397 GAGTACATTGACATGGCTGAGTCATTATGTCAAAAACGCGCATTAGAAGCTTTTCAGTTA 456
Query 510 GATCCTTCTAAATGGGGAGTCAATGTGCAGTCTTTATCAGGATCACCAGCTAATTTCCAA 569
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 457 GATCCTTCGAAATGGGGAGTCAATGTGCAGTCTTTATCAGGATCACCAGCTAACTTCCAA 516
Query 570 GTTTACACTGCATTGTTGAAGCCTCATGAAAGAATCATGGCACTTGATTTACCTCATGGT 629
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 GTTTACACTGCATTGTTAAAGCCTCATGAAAGAATCATGGCACTTGATTTACCTCATGGT 576
Query 630 GGACATCTTTCTCATGGTTATCAGACTGACACGAAGAAAATATCGGCTGTATCCATCTTT 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 577 GGACATCTTTCTCATGGTTATCAGACTGACACGAAGAAAATATCGGCTGTATCCATCTTT 636
Query 690 TTTGAGACAATGCCATACAGATTGGATGAGAACACTGGTTACATTGATTATGACCAGCTA 749
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 637 TTTGAGACAATGCCATACAGATTGGATGAGAACACTGGTTACATTGATTACGATCAGCTA 696
Query 750 GAAAAGAGTGCCGTGCTTTTCAGACCGAAACTTATTGTTGCGGGTGCAAGTGCTTATGCT 809
||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 697 GAAAAAAGTGCGGTGCTTTTCAGACCCAAACTTATTGTTGCGGGTGCAAGTGCTTATGCT 756
Query 810 CGTCTATATGACTATGCACGTATTCGTAAGGTCTGTAACAAGCAAAAGGCAGTTATGTTG 869
||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||| ||
Sbjct 757 CGTCTATATGATTATGCACGTATTCGTAAGGTTTGTGACAAGCAAAAGGCAGTTATGCTG 816
Query 870 GCTGATATGGCTCATATTAGTGGGTTGGTTGCTGCTGGCGTTATTCCTTCTCCTTTTGAG 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 817 GCTGATATGGCTCATATTAGTGGGTTGGTTGCTGCTGGCGTTATTCCTTCTCCTTTTGAG 876
Query 930 TATGCAGATGTTGTTACGACTACAACTCACAAATCGCTTCGCGGTCCTAGAGGGGCTATG 989
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 877 TATGCAGATGTTGTTACAACTACAACTCACAAATCGCTTCGCGGTCCTAGAGGGGCTATG 936
Query 990 ATATTCTTTAGGAAGGGGTTAAAAGAGATTAACAAACAAGGGAAAGAGGTCATGTATGAC 1049
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 937 ATATTCTTTAGGAAGGGGTTAAAAGAGATTAACAAACAAGGGAAAGAGGTCATGTATGAC 996
Query 1050 TATGAGGACAGAATTAATCAAGCTGTTTTTCCTGGACTGCAAGGTGGTCCACATAATCAC 1109
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 997 TATGAGGACAGAATTAACCAAGCTGTTTTTCCTGGACTGCAAGGTGGTCCACATAATCAC 1056
Query 1110 ACTATAACGGGTCTAGCAGTTGCTCTGAAGCAGGCAAGAACTCCTGAGTACAAGGCCTAC 1169
||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||
Sbjct 1057 ACTATAACGGGTCTAGCAGTTGCTCTGAAGCAGGCGAGAACACCTGAGTATAAGGCCTAC 1116
Query 1170 CAGGATCAAGTTCTCCGTAATTGCTCAAAGTTTGCTGAGTTGGATATAAGACCTACT 1226
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 1117 CAGGATCAAGTTCTCCGTAATTGCTCAAAGTTTGCTGAGCTGGGTATAAGACCTACT 1173
Score = 955 bits (517), Expect = 0.0
Identities = 634/687 (92%), Gaps = 21/687 (3%)
Strand=Plus/Plus
Query 1258 CTTTGCTTGCGAAAGGATATGATTTAGTGTCTGGAGGCACTGATAATCATTTAGTTTTGG 1317
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1175 CTTTGCTTGCGAAAGGATATGATTTAGTGTCTGGAGGCACTGAGAATCATTTAGTTTTGG 1234
Query 1318 TGAATCTGAAAAACAAGGGAATAGATGGATCAAGAGTGGAAAAAGTATTAGAATTAGTAC 1377
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1235 TGAATCTGAAAAACAAGGGAATAGATGGATCAAGAGTGGAAAAAGTATTAGAATCAGTAC 1294
Query 1378 ATATTGCAGCAAACAAGAATACTGTTCCTGGTGATGTTTCTGCCATGGTTCCCGGTGGCA 1437
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1295 ATATTGCAGCAAACAAGAATACTGTTCCTGGTGATGTTTCTGCCATGGTTCCAGGTGGCA 1354
Query 1438 TCCGTATGGGAACACCAGCCCTCACATCAAGAGGATTCATTGAGGAAGATTTTGCAAAAG 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1355 TCCGTATGGGAACACCAGCCCTCACATCAAGAGGATTCATTGAGGAAGATTTTGCAAAAG 1414
Query 1498 TGGCGGAGTATTTTGATTTAGCCGTCAAGATAGCCTTAAAGATCAAAGCAGAGTCTCAAG 1557
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1415 TGGCGGAGTATTTTGATTTAGCCGTCAAGATAGCCTTAAAGATCAAGGCAGAGTCTCAAG 1474
Query 1558 GAACAAAGTTGAAAGACTTTGTAGCAACAATGCAATCAAATGAGAAATTACAGTCAGAGA 1617
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1475 GAACAAAGTTGAAGGACTTTGTAGCAACAATGCAATCAAATGAGAAATTACAGTCAGAGA 1534
Query 1618 TGTCAAAGCTCCGTGAGATGGTAGAAGAATATGCTAAGCAATTCCCAACGATTGGGTTCG 1677
|| ||||| | ||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1535 TGGCAAAGTTGCGTGAGATGGTAGAAGAATATGCGAAGCAATTCCCAACAATTGGGTTCG 1594
Query 1678 AGAAAGAGACGATGAGATACAAAGAGTAGTTTTCA-TCGTGTGGATTGACACGTTTCCAC 1736
|||||||||||||||||||||| ||||||||| || || |||||||||||||||||||
Sbjct 1595 AGAAAGAGACGATGAGATACAAGGAGTAGTTT-CAATCAAATGGATTGACACGTTTCCAC 1653
Query 1737 ATCTCTGAGATGCTTTAGGTACCTAAAACACTTAATTATACATAAGCTTCTTCTATGAAA 1796
||||| |||||||||||||||||||||||||||| |||||| ||||||| |||| |||||
Sbjct 1654 ATCTCCGAGATGCTTTAGGTACCTAAAACACTTAGTTATACGTAAGCTTATTCTCTGAAA 1713
Query 1797 TATTTTGGAGGGA-CTCATTATGGGGCGATTGTGCAACCGTTTGCAGTGATCATGGACCA 1855
||||| | ||||| |||||||||| |||| | |||||| |||||||||||| |||||||
Sbjct 1714 TATTT-G-AGGGAACTCATTATGGAGCGACTATGCAACTTTTTGCAGTGATCTTGGACCA 1771
Query 1856 GAGGCGCAACCGATGGTCTGAAGTATCGCTGAAACTAAAGTTGAACTaaaaaaaTCGCAC 1915
|||||| || | | ||| || ||||||||||||||||| |||||| ||||
Sbjct 1772 GAGGCG-AA--G-TA-TCT-------CG--GAAACTAAAGTTGAACTCGAAAAATGGCAC 1817
Query 1916 TCCAATGTTGTCTCTTACCCTTTCCTT 1942
|||| |||||||| ||| | ||| |||
Sbjct 1818 TCCAGTGTTGTCT-TTATC-TTTGCTT 1842
Score = 76.8 bits (41), Expect = 6e-13
Identities = 44/45 (98%), Gaps = 1/45 (2%)
Strand=Plus/Plus
Query 38 AACCG-CTTTTATATAATCGCACTCACTCAGAGAAACAGAGAAGA 81
||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 AACCGCCTTTTATATAATCGCACTCACTCAGAGAAACAGAGAAGA 45
> Ahg490821 jgi|Araly1|490821|fgenesh2_kg.7__254__AT4G37930.1
Length=1850
Score = 726 bits (393), Expect = 0.0
Identities = 741/909 (82%), Gaps = 24/909 (3%)
Strand=Plus/Plus
Query 309 GAGAAGGCTAGACAATGGAAGGGATTTGAACTTATACCGTCAGAGAATTTCACTTCTCTA 368
||||| |||||||||||||||||| |||| ||||| || || ||||| ||||| ||| |
Sbjct 389 GAGAAAGCTAGACAATGGAAGGGACTTGAGCTTATTCCATCTGAGAACTTCACATCTGTT 448
Query 369 TCTGTGATGCAAGCCGTTGGTTCTGTTATGACTAATAAGTATAGTGAAGGATACCCTGGA 428
|| ||||||||||| ||||| ||||| |||||||| || ||||||||||| || |||||
Sbjct 449 TCCGTGATGCAAGCTGTTGGGTCTGTGATGACTAACAAATATAGTGAAGGGTATCCTGGT 508
Query 429 GCTAGATACTATGGAGGAAATGAGTACATTGACATGGCTGAGACATTATGTCAAAAACGC 488
|| |||||||||||||||||||||||||| |||||||| || || ||||| || || |||
Sbjct 509 GCGAGATACTATGGAGGAAATGAGTACATAGACATGGCAGAAACCTTATGCCAGAAGCGC 568
Query 489 GCAT-TAGAAGCTTTTCAGTTAGATCCTTCTAAA-TGGGGAGTCAATGTGCAGTCTTTAT 546
|| | | |||||||| | ||||||||| | ||| |||||||| |||||||| |||| |
Sbjct 569 GC-TCTTGAAGCTTTCCGGTTAGATCC-TGAAAAGTGGGGAGTGAATGTGCAACCTTTGT 626
Query 547 CAGGATCACCAGCTAATTTCCAAGTTTACACTGCATTGTTGAAGCCTCATGAAAGAATCA 606
| ||||| || || || ||||| || |||||||||||||| |||||||||||||||||||
Sbjct 627 CTGGATCTCCTGCCAACTTCCATGTCTACACTGCATTGTTAAAGCCTCATGAAAGAATCA 686
Query 607 TGGCACTTGAT-TTACCTCATGGTGGACATCTTTCTCATGGTTATCAGACTGACACGAAG 665
|||| |||||| || ||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 687 TGGCTCTTGATCTT-CCTCATGGTGGTCATCTTTCTCATGGTTATCAGACTGACACCAAG 745
Query 666 AAAATATCGGCTGTATCCATCTTTTTTGAGACAATGCCATA-CAGATTGGATGAGAACAC 724
|| ||||| ||||| || ||||| ||||| |||||||| || | ||||||| |||| |||
Sbjct 746 AAGATATCTGCTGTGTCTATCTTCTTTGAAACAATGCCTTATC-GATTGGACGAGAGCAC 804
Query 725 TGGTTACATTGATTATGACCAGCT--AGAAAAGAG-TGCCGTGCTTTTCAGACCGAAACT 781
||| ||||| || || || ||| | ||||||| | | | | |||||||| || |||||
Sbjct 805 TGGCTACATCGACTACGATCAGATGGAGAAAAGCGCTAC--T-CTTTTCAGGCCAAAACT 861
Query 782 TATTGTTGCGGGTGCAAGTGCTTATGCTCG-TCTATATGACTATGCACGTATTCGTAAGG 840
|||||||| ||||| |||||||||||||| | | ||||| ||||| || || || ||||
Sbjct 862 GATTGTTGCTGGTGCGAGTGCTTATGCTCGAT-TGTATGATTATGCCCGCATCCGAAAGG 920
Query 841 TCTGTAACAAGCAAAAGGCAGTTATGTTGGCTGATATGGCTCATATTAGTGGGTTGGTTG 900
|||||||||||||||| || || ||| | || |||||||| || || ||||| |||||||
Sbjct 921 TCTGTAACAAGCAAAAAGCTGTAATGCTAGCAGATATGGCACACATCAGTGGTTTGGTTG 980
Query 901 CTGCTGGCGTTATTCCTTCTCCTTTTGAGTATGCAGATGTTGTTACGACTACAACTCACA 960
||||| || || ||||| || || || ||||| |||||||| || || ||||| ||||
Sbjct 981 CTGCTAATGTAATCCCTTCACCGTTCGACTATGCTGATGTTGTAACCACCACAACCCACA 1040
Query 961 AATCGCTTCGCGGTCCTAGAGGGGCTATGATATTCTTTAGGAAGGG-GTTAAAAGAGATT 1019
| || ||||| || || | || || ||||| ||||| || ||||| ||||| || |||
Sbjct 1041 AGTCACTTCGTGGACCCCGTGGAGCCATGATTTTCTTCAGAAAGGGTGTTAAG-GAAATT 1099
Query 1020 AACAAACAAGGGAAAGAGGTCATGTATGACTATGAGGACA-GAATTAATCAAGCTGTTTT 1078
|||||||||||||||||||| ||||||| | ||| |||| || | ||||||||||| ||
Sbjct 1100 AACAAACAAGGGAAAGAGGTTTTGTATGATTTTGAAGACAAGA-TCAATCAAGCTGTCTT 1158
Query 1079 TCCTGGACTGCAAGGTGGTCCACATAATCACACTATAACGGG-TCTAGCAGTTGCTCTGA 1137
||||| || |||||||| ||||| || |||||||| || || | |||| |||||| |||
Sbjct 1159 CCCTGGTCTTCAAGGTGGACCACACAACCACACTATTACAGGAT-TAGCTGTTGCTTTGA 1217
Query 1138 AGCAGGCAAGAACTCCTGAGTACAAGGCCTACCAGGATCAAGTTCTCCGTAATTGCT-CA 1196
| ||||||| ||| | |||||||| || ||||| || ||||| || |||| | | ||
Sbjct 1218 AACAGGCAACTACTTCAGAGTACAAAGCATACCAAGAGCAAGTCCTGAGTAACAG-TGCA 1276
Query 1197 AAGTTTGCT 1205
|||||||||
Sbjct 1277 AAGTTTGCT 1285
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77932641270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5