BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G26790.1
Length=520
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489512 jgi|Araly1|489512|fgenesh2_kg.6__2646__AT5G26790.1 383 7e-106
> Ahg489512 jgi|Araly1|489512|fgenesh2_kg.6__2646__AT5G26790.1
Length=418
Score = 383 bits (207), Expect = 7e-106
Identities = 248/268 (93%), Gaps = 2/268 (1%)
Strand=Plus/Plus
Query 34 acacacacacacTAGAATCCACTTCAATGCCGTCATCTATCCGCTGGTGGTGGCCGATCC 93
||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 ACACAAACACACTATAATCCACTTCAATGCCGTCATCTATCCGGTGGTGGTGGCCGATCC 60
Query 94 ATTTCACTTCATCTGGATCTGTACCAAGGTGGCTGAGTTGGCGTCGACCGGAGCTGAGTT 153
||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||
Sbjct 61 ATTTCACTTCATCTGGATCTGCACCGAGGTGGCTCAGTTGGCGTCGACCGGAGCTGAGTT 120
Query 154 TATTGTCTGTGGTGGTCGACGACGTTGTGTGGAAAGTTGTTACGGCGTTCGAGTCGGTGG 213
|||||||||||||| ||||||||||||| |||||||| || || ||||||||||| ||||
Sbjct 121 TATTGTCTGTGGTGTTCGACGACGTTGTCTGGAAAGTAGTGACTGCGTTCGAGTCCGTGG 180
Query 214 CCTTGGTCTCCATGCTCTGTTTCTTCTTCCTCTTTTGTGGCTGCACCGTCTAGTTTTGAT 273
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 181 CGTTGGTCTCCATGCTCTGTTTCTTCTTCCTCTTCTGTGGCTGCACCGTCTAGTTTTTTT 240
Query 274 TTT-ACTTAATCTCGTTAAGA-tttttt 299
||| || ||||||||||||| ||||||
Sbjct 241 TTTCACATAATCTCGTTAAGTGTTTTTT 268
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18925172144
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5