BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G26800.1 Length=638 Score E Sequences producing significant alignments: (Bits) Value Ahg326904 jgi|Araly1|326904|fgenesh1_pm.C_scaffold_6002124 516 9e-146 > Ahg326904 jgi|Araly1|326904|fgenesh1_pm.C_scaffold_6002124 Length=339 Score = 516 bits (279), Expect = 9e-146 Identities = 320/340 (94%), Gaps = 2/340 (1%) Strand=Plus/Plus Query 74 ATGGCGTGGATGCGACTGATACAGAGCGCGAGATCTGTTCTTACGA-CAGCACCAGCGTC 132 ||||||||||||||||||||||||||||||||||||| || || || | | |||| || | Sbjct 1 ATGGCGTGGATGCGACTGATACAGAGCGCGAGATCTGCTC-TAAGAGCCGAACCAACGCC 59 Query 133 TTCGACTCTTAACTTCCATAGATTCTACTCCAAATCCGCCGCTCCTTATCACGTGAAAGT 192 |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 60 GTCGACTCTTAACTTCCCTAGATTCTACTCCAAATCCGCCGCTCCTTATCCCGTGAAAGT 119 Query 193 TGGAATTCCTGAGTTTTTGAGTGGGATTGGTGGAGGAGTTGAGACTCATATTGCTAAGCT 252 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 120 TGGAATTCCTGAGTTTTTGAGTGGGATTGGAGGAGGAGTTGAGACTCATATTGCTAAACT 179 Query 253 TGAAACCGAGTTAGGCGATCTTCCGAAATTGCTCGTGACTCGTACGCTTAGACTCAAGAA 312 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 180 TGAAACCGAGTTAGGCGATCTTCCGAAGCTGCTCGTGACTCGTACGCTTAGACTCAAGAA 239 Query 313 GTTTGGTATTCCTTGCAAACATAGGAAATTGATACTGAAATATAGCCACAAATACAGGCT 372 ||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 240 GTTCGGTATCCCTTGCAAACATAGGAAACTGATACTGAAATATAGCCACAAATACAGGCT 299 Query 373 AGGTCTATGGAAACCTAGAGCTGACGCAATAAAGGCGTGA 412 |||||||||||||||||||||||| || |||||||||||| Sbjct 300 AGGTCTATGGAAACCTAGAGCTGATGCTATAAAGGCGTGA 339 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23369348121 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5