BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G26800.1

Length=638
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg326904 jgi|Araly1|326904|fgenesh1_pm.C_scaffold_6002124           516    9e-146


> Ahg326904 jgi|Araly1|326904|fgenesh1_pm.C_scaffold_6002124
Length=339

 Score =  516 bits (279),  Expect = 9e-146
 Identities = 320/340 (94%), Gaps = 2/340 (1%)
 Strand=Plus/Plus

Query  74   ATGGCGTGGATGCGACTGATACAGAGCGCGAGATCTGTTCTTACGA-CAGCACCAGCGTC  132
            ||||||||||||||||||||||||||||||||||||| || || || | | |||| || |
Sbjct  1    ATGGCGTGGATGCGACTGATACAGAGCGCGAGATCTGCTC-TAAGAGCCGAACCAACGCC  59

Query  133  TTCGACTCTTAACTTCCATAGATTCTACTCCAAATCCGCCGCTCCTTATCACGTGAAAGT  192
             |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct  60   GTCGACTCTTAACTTCCCTAGATTCTACTCCAAATCCGCCGCTCCTTATCCCGTGAAAGT  119

Query  193  TGGAATTCCTGAGTTTTTGAGTGGGATTGGTGGAGGAGTTGAGACTCATATTGCTAAGCT  252
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct  120  TGGAATTCCTGAGTTTTTGAGTGGGATTGGAGGAGGAGTTGAGACTCATATTGCTAAACT  179

Query  253  TGAAACCGAGTTAGGCGATCTTCCGAAATTGCTCGTGACTCGTACGCTTAGACTCAAGAA  312
            |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct  180  TGAAACCGAGTTAGGCGATCTTCCGAAGCTGCTCGTGACTCGTACGCTTAGACTCAAGAA  239

Query  313  GTTTGGTATTCCTTGCAAACATAGGAAATTGATACTGAAATATAGCCACAAATACAGGCT  372
            ||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  240  GTTCGGTATCCCTTGCAAACATAGGAAACTGATACTGAAATATAGCCACAAATACAGGCT  299

Query  373  AGGTCTATGGAAACCTAGAGCTGACGCAATAAAGGCGTGA  412
            |||||||||||||||||||||||| || ||||||||||||
Sbjct  300  AGGTCTATGGAAACCTAGAGCTGATGCTATAAAGGCGTGA  339



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23369348121


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5