BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G26805.1

Length=525
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg942261 jgi|Araly1|942261|scaffold_602805.1                        619    5e-177


> Ahg942261 jgi|Araly1|942261|scaffold_602805.1
Length=514

 Score =  619 bits (335),  Expect = 5e-177
 Identities = 445/497 (90%), Gaps = 12/497 (2%)
 Strand=Plus/Plus

Query  1    CAAACATGATAAAATCATTGTTCTACACTTTCCTTCAAACGAAACACCAAGAAGAAAGCA  60
            |||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||| | 
Sbjct  19   CAAACATGATCAAATCATTGTTCTACACCTTCCTTCAAACGATACACCAAGAAGAAAACG  78

Query  61   ACAACTCAAGAGATCCTAATTATCCTCTATTTCCTCAAGAGATCGAGATTCGACCCATAG  120
             | | |||| ||||||||||||||| ||||||||||||||| ||||||| ||||||||||
Sbjct  79   TCGATTCAACAGATCCTAATTATCCACTATTTCCTCAAGAGGTCGAGATCCGACCCATAG  138

Query  121  CTTATTTCCCTTGGGAAATCATCAAAACTCTAACAACCGATGAAATCATAAG-TAAGTTC  179
            |||||||||||||||||||| |||| || |||||||  ||||||||||| || |||||||
Sbjct  139  CTTATTTCCCTTGGGAAATCCTCAAGACCCTAACAATTGATGAAATCAT-AGATAAGTTC  197

Query  180  CAACTTCCAATGGAAAAAATCCGAGATACCATGCTTAGACATGCTTCAGAAGAAGACATA  239
            ||||||||||||||| ||||||| ||||| ||||||||| ||| ||||||||| | ||||
Sbjct  198  CAACTTCCAATGGAACAAATCCGGGATACTATGCTTAGAGATGTTTCAGAAGATGTCATA  257

Query  240  TATCGCACAAAATTTATGAGTTG-TGAGACC-AATATATTGGTAAAAGATCTCGACACAA  297
            | ||||||||| ||||||| ||| || | || || |||||||||||||||||||| ||||
Sbjct  258  TCTCGCACAAATTTTATGATTTGTTGCG-CCGAA-ATATTGGTAAAAGATCTCGATACAA  315

Query  298  ACACTATCCATCAAGGTAAATTGTGGAAGCATCC-ATGCGAAAATAATTTTGCATTGCGT  356
            ||||||||||||||| |||||||||||||||||| |  |||||||||||||||| | | |
Sbjct  316  ACACTATCCATCAAGTTAAATTGTGGAAGCATCCGA-ACGAAAATAATTTTGCACTACAT  374

Query  357  GAATCTTGGATCGAAGAATTTGTGAAGAGGAGGAGGCTTGTGGTTGGCATGGTGGTTGGT  416
             |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  375  AAATCTTGGATCGAAGAATTTGTGAAGAGGAGGAGGCTTGTGGATGGCATGGTGGTTGGT  434

Query  417  ATGTATTGGGATTTTGAGGCCTGC-ATGTTTTGTTTCTCTGTGTTAGATGGAAGACAA-T  474
            |||||||||||||||||||| | | ||||||||||||||||||||||| ||||| ||| |
Sbjct  435  ATGTATTGGGATTTTGAGGC-TACCATGTTTTGTTTCTCTGTGTTAGAGGGAAG-CAAAT  492

Query  475  GAATCTAAAGATTCAAA  491
            || || |||||||||||
Sbjct  493  GAGTCAAAAGATTCAAA  509



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19115950089


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5