BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G26810.1
Length=882
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489513 jgi|Araly1|489513|fgenesh2_kg.6__2647__AT5G26810.1 1288 0.0
> Ahg489513 jgi|Araly1|489513|fgenesh2_kg.6__2647__AT5G26810.1
Length=880
Score = 1288 bits (697), Expect = 0.0
Identities = 825/886 (93%), Gaps = 12/886 (1%)
Strand=Plus/Plus
Query 1 ATGCCTTGTTTGTTCATCTTCATAGCTTTGCTTCTAAGTTCTTGTATTGGAA--CGTTGA 58
||| ||||||||||||||||||||||||||||||| |||| |||| || || | ||||
Sbjct 1 ATGTCTTGTTTGTTCATCTTCATAGCTTTGCTTCTGAGTTTTTGTCTT--AAGTCCTTGA 58
Query 59 AAGCCCTTGATCAGACTTGTGGCAACAAAGTCGTGAACACAATCGTCGTCGACCAAGCCG 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 59 CAGCCCTTGATCAGACTTGTGGCAACAAAGTCGTGAACACAATCGTCGTCGACCAAACCG 118
Query 119 GTTCAGGAGAGGGACAAAGAGTCACCACCATCACGTATAATGGTCATGCAGCCACTGACG 178
||||||||||||||||||||||||| ||||||| ||| |||||||| | |||||||||||
Sbjct 119 GTTCAGGAGAGGGACAAAGAGTCACGACCATCATGTACAATGGTCACGAAGCCACTGACG 178
Query 179 TCAGCTCAACTTTCACTTCATATCCATCCCATATTGTCGTCCGAAACTTATCAATCATGA 238
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 179 TCAGCTCAACTTTCACTTCATATCCACCCCATATTGTCGTCCGAAACTTATCAATCATG- 237
Query 239 ACACTTATAATCGTTTGACTAGTCTAAC--T-AAAGCAAACGGTATGAGTTGGGATATAA 295
|| ||| ||| ||||| ||||||||| | |||||||||| |||||||||| | ||||
Sbjct 238 --ACGTATTATCCTTTGAATAGTCTAACGATGAAAGCAAACGATATGAGTTGGAAAATAA 295
Query 296 AGCCAGCGGTTGCGATTTCGGTTTATGGCGATAAATCAGCGTTTTACAACTGTGATTTCT 355
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 296 AGCCGGCGGTTGCGATTTCGGTTTATGGCGATAAATCAGCGTTTTACAACTGCGATTTCG 355
Query 356 TGGGGTTGCAAGATACAGTGTGGGATAATCTTGGCAGACATCACTTCAAAAATTGTTACA 415
||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 356 TGGGGTTACAAGATACAGTGTGGGATAATCATGGCAAACATCACTTCAAAAATTGTTACA 415
Query 416 TCGAAGGTGCTATCGATTTCATTTTTGGAAGTGGCCAATCTGTTTACGAGGACTGTCATA 475
|| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 416 TCCAAGGTGCTATCGATTTCATTTTTGGAAGTGGCCAATCTATTTATGAGGACTGTCATA 475
Query 476 TAAACGCAACGGCAGGAGCATTGGCATCAAAAGTGTCGTTTGGGTACATAACGGCTCAAG 535
||||||||||||||||||||||||||||| ||||| || |||| ||||||||||||||||
Sbjct 476 TAAACGCAACGGCAGGAGCATTGGCATCAGAAGTGGCGGTTGGATACATAACGGCTCAAG 535
Query 536 GAAGAAGTAGCGATTCGGACCCAAGTGGGTTCGTGTTCCTACGAGGTAGTGTTTCAGGGA 595
||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 536 GAAGAAGCAGCGTTTCGGACCCAAGTGGCTTCGTGTTCCTACGAGGTAGTGTTTCAGGGA 595
Query 596 GC-ACCAGTGTCTATCTTGGACGAGCCTATGGTCCATTCAGTCGAGTGATATTCATCCAA 654
| |||||||||||||||||||||||||||||||||||||| ||||| || |||||||||
Sbjct 596 -CTACCAGTGTCTATCTTGGACGAGCCTATGGTCCATTCAGCCGAGTCATTTTCATCCAA 654
Query 655 ACCGATCTCTCTTCCGTCGTGCACCCTGAGGGTTGGTACTCTTGGCACTATGGTGGATAC 714
|||||||||||||||||||| |||||| |||||||| || |||||||||||||| |||||
Sbjct 655 ACCGATCTCTCTTCCGTCGTCCACCCTAAGGGTTGGGACCCTTGGCACTATGGTAGATAC 714
Query 715 GAGATGAGTTTCACGTATGCAGAAGTTGAGTGTAAAGGAGCAGGATCGGATATGTCACGA 774
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||
Sbjct 715 GAGATGAGTTTCACGTATGCAGAAGTCGAGTGTAAAGGAGCAGGATCGGATATTTCAGGA 774
Query 775 AGAGTTCCTTGGATTGATAAACTTCATTCTTTTTACACTAAACAACAATTCTCTATCTCT 834
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 AGAGTTCCTTGGAGTGACAAACTTCATTCTTTTTACACTAAACAACAATTCTCTATCTCT 834
Query 835 AATTTCATTGACCAAGATCAATGGATCTCTAATATTCCTCGTTTTT 880
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 AATTTCATTGACCAAGATCAATGGATCTCTAATATTCCTCGTTTTT 880
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32671339869
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5