BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G26820.1
Length=2136
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489514 jgi|Araly1|489514|fgenesh2_kg.6__2648__AT5G26820.1 3001 0.0
> Ahg489514 jgi|Araly1|489514|fgenesh2_kg.6__2648__AT5G26820.1
Length=2034
Score = 3001 bits (1625), Expect = 0.0
Identities = 1793/1876 (96%), Gaps = 3/1876 (0%)
Strand=Plus/Plus
Query 220 GAGGAGAATCAATTTAT-AGAATGGTTGTTTCAATGGCTTTGGTCAGACATTCTCCGTCT 278
||| ||||||||||| | |||||||||||||| |||||||||||||||||||| ||||||
Sbjct 158 GAGAAGAATCAATTT-TCAGAATGGTTGTTTCCATGGCTTTGGTCAGACATTCCCCGTCT 216
Query 279 TTCGATTTTCTGTTTCATTTTCCGGTCGACAGAAGCCGTTTTCTATCGCCGGTTGCTTTT 338
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 217 TTCGATTTTCTGTTTCATTTTCCGGTCGACAGAAGTCGTTTTCTATCGCCGGTGGCTTTT 276
Query 339 TCTAGCGTTCGCTATCATCGCTTCCATTCTTGTAGATGGTTAAGTCTCCGCTCTTCACCT 398
||||| |||||||||||||| |||| |||||||||||||||||||||| |||| ||||||
Sbjct 277 TCTAGAGTTCGCTATCATCGGTTCCCTTCTTGTAGATGGTTAAGTCTCAGCTCATCACCT 336
Query 399 TCATGTTCTCGCAGGTTAAACAGTTTTAGTTCGAGGTGTTCGATTACAAACACTGATGTA 458
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 337 TCATGTTCTCGCAGGTTAAACAGTTTTAGTTCGAGGTGTTCGATTATAAACACTGATGTA 396
Query 459 TGTCACGAATTTGTGACTACTGATGATGAAATCCACGAGGATTTGCTTACTCCAATTGAG 518
|||||||| ||||| ||||||||||||| || ||||||||||||||| |||||||||||
Sbjct 397 TGTCACGATTTTGTCACTACTGATGATGGCATTCACGAGGATTTGCTTGCTCCAATTGAG 456
Query 519 GATCATTCAATTCCTATTGTTCATCTTGATACCAATATCTCCGTTACTGAATCTCTGACC 578
|||||| ||||||| ||||||||| | |||||||||||| ||||||||||||| |||| |
Sbjct 457 GATCATACAATTCCCATTGTTCATATCGATACCAATATCGCCGTTACTGAATCGCTGAGC 516
Query 579 TTACTCACCGAGTGTACTTACGTAGATACTGTTTTAACAGCATTGCCTGTATTGTCTGAG 638
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 517 TTACTCACCGAGTGTACTTACGTAGATACCGTTTTAACCGCATTGCCTGTATTGTCTGAG 576
Query 639 GAAGAGCAGACTGTAATTGCAGCCACTCCTGCTCACCCTGAAGGATTATATGTCTTATAT 698
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 577 GAGGAGCAGACTGTAATTGCAGCCACTCCTGCTCACCCTGAAGGGTTATATGTCTTATAT 636
Query 699 GCAAGTTGTTTGGTTGGAAATTTGGTTGAGCAACTTTGGAATTTTGCTTGGCCGTCCGCC 758
||||||||||||||||| ||||||||||| |||||||||||||| |||||||| ||||||
Sbjct 637 GCAAGTTGTTTGGTTGGGAATTTGGTTGAACAACTTTGGAATTTCGCTTGGCCTTCCGCC 696
Query 759 ATTGCAATGCTATATCCGAGCTTACTACCTGTGGCAGTCATGGGGTTTGTCACTAAATTG 818
||||| |||| | ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 697 ATTGCGATGCGACATCCGAGCTTACTACCTGTGGCAGTCATGGGGTTTGTTACTAAATTG 756
Query 819 GCGATAATTGCTGGAGGCCCTGTGGTTGGAAAGTTTATGGATTATAGTCCGAGAGTTCCT 878
|||||||||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct 757 GCGATAATTGCTGGGGGTCCAGTGGTTGGAAAGTTTATGGATTATAGTCCGAGAGTTCCT 816
Query 879 ACATATATCTCGTTGAATGTCATTCAGGCAGCCGCTCAAGTGCTATCTGCAGGAATGATA 938
|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 817 ACGTATATCTCGTTGAATGTCATTCAGGCAGCCGCTCAAGTGGTATCTGCAGGAATGATT 876
Query 939 ATTCATGCATACACGGTTCCTTCCACATCGGCGTCATCAATTCTTCTGCAGCCTTGGTTT 998
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 877 ATTCATGCATACACGGTTCCTTCCACATCGGCGTCATCAATTCTTCTTCAGCCTTGGTTT 936
Query 999 TTTGCATTGTTATTCGCAGGGGCCATTGACAGTCTATGTGGAATAGCATCTGGAGTCGCC 1058
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 937 TTTGCATTGTTATTCGCAGGGGCCATTGACAGTCTATGTGGAATAGCATCTGGAGTCGCC 996
Query 1059 ATTGAACGTGATTGGGTTGTATTGTTGGCCGGCATAAACAGACCAATCGCTCTTGCTCAA 1118
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||
Sbjct 997 ATTGAACGTGATTGGGTCGTATTGTTGGCGGGCATAAACAGACCAATCGCTCTTGCACAA 1056
Query 1119 GCAAATGCTGTTCTCCACAGAATAGATCTGCTTTGCGAGATAGCTGGGACGATGTTATTT 1178
|||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||
Sbjct 1057 GCAAATGCTGTTCTCCACCGAATAGATCTGCTTTGCGAGATCGCTGGGACCATGTTATTT 1116
Query 1179 GGCATTCTCCTATCCAAATATGACCCTGTGACCTGCTTAAAGTTTGCTGCCACACTAATG 1238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1117 GGCATTCTCCTATCCAAATATGACCCTGTGACCTGCTTAAAGTTTGCTGCCACACTAATG 1176
Query 1239 GTGGGTTCTTTGCCAACCATGACAGCTCTTATATGGCTGACCAACAAGTTCTCCTCTGGA 1298
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1177 GTGGGTTCTTTGCCAACCATGACAGCTCTTATATGGCTGACCAACAAGTTCTCTTCTGGA 1236
Query 1299 GTTCTGGACCGTCCTAAATGCTCCTTGAACAGCTGTTCTGCTGAAGGATCTCGTACTAAT 1358
|||||||||||||||||||||||| ||| |||||||||||| |||||| |||||||||||
Sbjct 1237 GTTCTGGACCGTCCTAAATGCTCCCTGAGCAGCTGTTCTGCCGAAGGACCTCGTACTAAT 1296
Query 1359 ACCGACAGTATTTTTGATATTGGCATGGAAACTATCAAGCTCGGATGGAAAGAATATATT 1418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1297 ACCGACAGTATTTTTGATATTGGCATGGAAACTATCAAGCTCGGATGGAAAGAATATATT 1356
Query 1419 CAACAGCCAGTTCTTCCTGCTAGCCTCGCATATGTCCTTCTCTACTTTAACATCGTCCTC 1478
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1357 CAACAGCCAGTTCTTCCTGCTAGCCTTGCATATGTCCTTCTCTACTTTAACATCGTCCTC 1416
Query 1479 ACCCCAGGCAGCTTGATGACTGCATTTCTAACACAACGATGTGTGAATCCATCAGTTATT 1538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1417 ACCCCAGGCAGCTTGATGACTGCATTTCTAACACAACGATGTGTGAATCCATCAGTTATT 1476
Query 1539 GGTGGTTTCAGTGGATTATGCGCTGTTATGGGCGTCGCCGCAACCTTCTTATCAGCAAAC 1598
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1477 GGTGGTTTCAGTGGATTATGCGCTGTTATGGGCGTTGCCGCAACCTTCTTATCAGCAAAC 1536
Query 1599 TTGGTCAAACGAGTTGGCATTTTAAAGGCGGGTGCAGTAGGATTGTTTTTCCAAGCTTCA 1658
||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1537 TTGGTCAAACGCGTTGGCATTCTGAAGGCGGGTGCAGTAGGATTGTTTTTCCAAGCTTCA 1596
Query 1659 CTCCTTGCCGTTGCTGTTGCTGTGTATTGTAGCTCTTCTCTATCCCATAAAAGCCCACTC 1718
|| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1597 CTTCTTGCTGTTGCTGTTGCTGTGTATTGTAGCTCTTCTCTATCCCAGAAAAGCCCACTC 1656
Query 1719 TTCTTCTTCTTGTCCATGATCGTATTATCAAGGCTAGGTCACATGTCTTACGGCGTTGTG 1778
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1657 TTCTTCTTCTTGTCCATGATCGTATTATCGAGGTTAGGTCACATGTCTTACGGCGTTGTG 1716
Query 1779 GGAGCTCAAATACTTCAAACCGGCATTCCATCATCCAAGGCTAATCTCATCGGCGCAACG 1838
|||||||| || || |||||||| |||||||| |||||||||||||||||||| |||||
Sbjct 1717 GGAGCTCAGATTCTCCAAACCGGAATTCCATCGTCCAAGGCTAATCTCATCGGTGCAACA 1776
Query 1839 GAGATCTCAGTGGCAAGTCTAGCTGAATCGCTTATGCTCGGAGTAGCCATAGCGGCGAAT 1898
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1777 GAGATCTCAGTGGCAAGTCTAGCTGAATCGCTGATGCTCGGAGTAGCCATAGCGGCAAAT 1836
Query 1899 GACGCTTCCCATTTCGGGTTTCTCGCGGTTCTGTCTCTTTTATCAGTTGTTGCGGCCTCA 1958
||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||
Sbjct 1837 GACGCTTCCCATTTCGGGTTTCTTGCAGTTCTGTCTCTTTTATCAGTTGTTGCAGCCTCT 1896
Query 1959 TTGATATTCTGCAGATTGCTGAGAAATCCCACTGATGAACAAAGACGACTCTTCTCCTTC 2018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1897 TTGATATTCTGCAGATTGCTGAGAAATCCCACTGATGAACAAAGACGACTCTTCTCCTTC 1956
Query 2019 GACCCTCTCTCAAATTGATTTGGAGCTTTTACATTGAAATATTT-GTATAGTAGTTTCAC 2077
|||||||| ||||||||||||||||||||||||| ||||||||| |||||||||| ||||
Sbjct 1957 GACCCTCTTTCAAATTGATTTGGAGCTTTTACATAGAAATATTTTGTATAGTAGTCTCAC 2016
Query 2078 TTTCAGTGTATAAATT 2093
||||||||||||||||
Sbjct 2017 TTTCAGTGTATAAATT 2032
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80370416950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5