BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G26830.1
Length=2395
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942264 jgi|Araly1|942264|scaffold_602808.1 3461 0.0
Ahg920738 jgi|Araly1|920738|scaffold_102019.1 1003 0.0
Ahg472010 jgi|Araly1|472010|fgenesh2_kg.1__1964__AT1G17960.1 667 0.0
> Ahg942264 jgi|Araly1|942264|scaffold_602808.1
Length=2182
Score = 3461 bits (1874), Expect = 0.0
Identities = 2070/2164 (96%), Gaps = 16/2164 (1%)
Strand=Plus/Plus
Query 35 ACCTTTGACAACAAATTTTGATGCTCCTTCGTCTTACGGCTCGCTCTATTCGTCGTTTCA 94
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACCTTTGACAACGAAGTTTGATGCTCCTTCGTCTTACGGCTCGCTCTATTCGTCGTTTCA 60
Query 95 CAACTTCTTCTTCGTCTCT---A-C-C-ATT-GC-TC-TC--AT-CGTCTTCGTTTTGTA 142
||||||||||||||||||| | | | || | || || | |||||||||||||||
Sbjct 61 CAACTTCTTCTTCGTCTCTACAAGCTCTCTTATCATCTTCGTCTGCGTCTTCGTTTTGTA 120
Query 143 CTGTTCCAACAATGGCAGCTAATCATCCTAAGGATGAAGCGTATCTCTCCGCCGTCATCC 202
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 121 CTGTTCCATCAATGGCAGCTAATCATCCAAAGGATGAAGCGTATCTCTCCGCCGTCATCC 180
Query 203 CCAAACGTATCAAG-CTTTTCGAGCAGATCCAAGCGAATCAACTCGAGAATCTTAAGTCT 261
||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCAAACGTATC-AGACTCTTCGAGCAGATCCAAGCGAATCAACTCGAGAATCTTAAGTCT 239
Query 262 CTTCCACACGATCCGATCAAGGTTACGTTACCAGATGGAAATGTGAAAGAAGGAAAGAAG 321
||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 240 CTTCCACACGATCCGATCAAGATTACGTTACCAGATGGGAATGTGAAAGAAGGAAAGAAA 299
Query 322 TGGGAGACAACTCCGATGGATATCGCTGCTCAGATTTCTAAGGGTTTGGCTAATTCTGCG 381
|||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 300 TGGGAGACAACTCCAATGGATATCGCTGCTCAGATTTCTAAGGGTTTGGCGAACTCTGCG 359
Query 382 TTGATTTCGGCTGTTGATGATGTTCTTTGGGATATGAATAGGCCATTGGAAGGTGATTGT 441
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 360 TTGATTTCGGCTGTTGATGATGTTCTTTGGGATATGAGTAGGCCATTGGAAGGTGATTGT 419
Query 442 AAGCTTGAGCTTTTCAAATTTGATAGCGATAAAGGTCGTGATACTCTTTGGCATTCTAGT 501
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 420 AAGCTTGAGCTTTTCAAATTTGATAGTGATAAAGGTCGAGATACTCTTTGGCATTCTAGT 479
Query 502 GCGCACATTCTTGGTCAGGCTCTCGAGCAGGAGTATGGGTGTCAGCTGTGCATTGGACCA 561
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 480 GCGCACATTCTTGGTCAGGCTCTCGAGCAGGAGTATGGGTGTCAGCTGTGCATAGGACCG 539
Query 562 TGCACAACGAGAGGAGAGGGTTTCTACTATGATGGATTTTATGGTGAATTGGGCCTGAGT 621
|| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 540 TGTACAACGAGAGGAGAGGGTTTCTACTATGATGGATATTATGGTGCATTGGGCCTGAGC 599
Query 622 GACAACCACTTTCCTAGCATCGAAGCAGGTGCTGCAAAAGCTGCTAAGGAAGCACAACCA 681
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GACAATCACTTTCCTAACATCGAAGCAGGTGCTGCAAAAGCTGCTAAGGAAGCACAACCA 659
Query 682 TTTGAAAGGATTGAAGTGACGAAGGATCAGGCACTCGAGATGTTTTCTGAGAATAATTTT 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TTTGAAAGGATTGAAGTGACGAAGGATCAGGCACTCGAGATGTTTTCTGAGAATAATTTT 719
Query 742 AAGGTTGAACTCATCAATGGTTTGCCTGCAGACATGACCATTACTGTCTACAGATGTGGC 801
||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 720 AAGGTTGAAATCATCAATGATTTGCCTGCAGACAAGACCATTACTGTCTACAGATGTGGC 779
Query 802 CCTTTGGTGGATTTGTGTCGTGGACCGCACATACCAAATACTTCCTTTGTGAAAGCGTTC 861
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 780 CCTTTGGTGGATTTGTGTCGTGGACCGCACATACCAAACACTTCCTTTGTGAAAGCGTTC 839
Query 862 AAGTGTTTGAGGGCCTCATCAGCTTACTGGAAGGGTGACAAAGACCGTGAGAGCTTGCAG 921
|| |||||||||||||||||||||||||||| |||| ||||||| ||||||||||| |||
Sbjct 840 AAATGTTTGAGGGCCTCATCAGCTTACTGGAGGGGTAACAAAGAACGTGAGAGCTTACAG 899
Query 922 AGAGTTTATGGGATATCTTATCCTGATCAGAAGCAGCTGAAGAAATATCTCCAATTTCTA 981
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AGAGTTTATGGGATATCATATCCTGATCAGAAGCAGCTGAAGAAATATCTCCAATTTCTA 959
Query 982 GAAGAAGCCAAAAAGTATGACCACAGACTATTGGGCCAAAAGCAGGAACTCTTCTTTAGT 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GAAGAAGCCAAAAAGTATGACCACAGACTATTGGGCCAAAAGCAGGAACTCTTCTTTAGT 1019
Query 1042 CATCAACTCAGCCCTGGGAGTTATTTCTTCCTTCCACTCGGCACTCGTGTATATAACAGG 1101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 CATCAACTCAGCCCTGGGAGTTATTTCTTCCTTCCACTCGGCACTCGTGTATATAACAGG 1079
Query 1102 TTGATGGACTTCATTAAGAACCAATACTGGCACAGGGGTTACACAGAGGTTATTACACCA 1161
|||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||||
Sbjct 1080 TTGATGGACTTCATTAAGAAGCAATACTGGCAAAGGGGTTACACAGAGGTCATGACACCA 1139
Query 1162 AATATGTACAACATGGAGTTGTGGCAAACATCCGGACATGCTGACAATTACAAGGATAAT 1221
||||||||||||||||| ||||| ||||||| ||||||||||| |||||||||||||||
Sbjct 1140 AATATGTACAACATGGACCTGTGGAAAACATCTGGACATGCTGATAATTACAAGGATAAT 1199
Query 1222 ATGTTTACGTTTAATATTGAGAAGCAAGAGTTCGGGCTCAAACCTATGAATTGTCCTGGT 1281
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1200 ATGTTTACGTTTAATATTGAAAATCAAGAGTTCGGGCTCAAACCTATGAATTGTCCTGGT 1259
Query 1282 CACTGCTTGATATTCCAGCATAGGGTTCGCTCATATAGAGAGTTACCTATGAGACTGGCC 1341
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1260 CACTGCTTGATATTCCAGCATAGGGTTCGCTCTTATAGAGAGTTACCTATGAGACTGGCT 1319
Query 1342 GACTTTGGAGTGTTACACCGCAATGAGGCAAGTGGAGCACTTAGTGGATTGACTCGTGTC 1401
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1320 GACTTTGGAGTGTTACACCGCAATGAGGCAAGTGGAGCACTTAGTGGGTTGACTCGCGTC 1379
Query 1402 CGACGGTTCCAGCAGGATGATGCACACATATTCTGTACAACGGAACAGGTTAAGGGA-GA 1460
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| | ||
Sbjct 1380 CGACGGTTCCAGCAGGATGATGCACACATCTTCTGTACAACAGAACAGGTTAAGG-ATGA 1438
Query 1461 AGTGCAGGGTGTGTTGGAGTTCATTGACTACGTGTACAAAGTTTTCGGGTTTACCTATGA 1520
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1439 AGTGCAGGGTGTGTTGGAGTTCATTGACTATGTGTACAAAGTTTTTGGGTTTACCTATGA 1498
Query 1521 GCTAAAACTTTCAACGAGGCCAGAGAAGTACCTTGGAGATTTGGAAACATGGGATAAAGC 1580
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1499 GCTAAAACTTTCAACGAGGCCAGAGAAGTACCTTGGAGAATTGGAAACATGGGATAAAGC 1558
Query 1581 TGAAGCGGATCTCAAAGAAGCTATAGAAGCTTTTGGAAAGCCATTAGTGTTGAACGAAGG 1640
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1559 TGAAGCGGATCTCAAAGAAGCTATAGAAGCTTTTGGAAAGCCATTAGTGTTGAATGAAGG 1618
Query 1641 AGATGGTGCATTTTATGGTCCAAAGATAGACATCACAGTTTCTGATGCAATGAATAGGAA 1700
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 AGATGGTGCATTTTATGGCCCAAAGATAGACATCACAGTTTCTGATGCAATGAATAGGAA 1678
Query 1701 ATTCCAGTGTGCTACTTTACAGCTTGATTTTCAACTTCCGATTCGCTTCAACTTGGAATA 1760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 ATTCCAGTGTGCTACTTTACAGCTTGATTTTCAACTTCCGATTCGCTTCAACTTGGAATA 1738
Query 1761 CGCAGCTGAGGATGAAGCGAAAAAGAGTAGACCTGTAATGATACATAGAGCCGTGTTGGG 1820
||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||
Sbjct 1739 CGCAGCTGAGGATGAAGCGAAGAAGGGTAAACCTGTAATGATACATAGAGCCGTGTTGGG 1798
Query 1821 ATCTGTGGAACGTATGTTTGCCATATTGTTGGAGCATTACAAAGGAAAATGGCCCTTCTG 1880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1799 ATCTGTGGAACGTATGTTTGCCATATTGTTGGAGCATTACAAAGGAAAATGGCCCTTCTG 1858
Query 1881 GATTAGTCCGCGACAGGCCATAGTTTGTCCTATATCAGAGAAATCTCAGCAATATGCAGA 1940
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1859 GATTAGTCCGCGCCAGGCCATAGTTTGTCCTATATCAGAGAAATCTCAGAAATATGCAGA 1918
Query 1941 AAAGGTTCAAAAGCAAATTAAAGATGCTGGGTTCTATGTTGATGCTGACTTAACAGACAG 2000
|||||| |||||| ||||| | ||||||||||||||| | ||||| ||||||||||||||
Sbjct 1919 AAAGGTGCAAAAGGAAATTCATGATGCTGGGTTCTATATCGATGCGGACTTAACAGACAG 1978
Query 2001 AAAGATAGATAAAAAGGTGCGAGAAGCTCAGCTTGCTCAGTACAACTACATTCTGGTCGT 2060
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1979 AAAGATAGATAAAAAGGTGCGAGAAGCTCAGCTTGCACAGTACAACTACATTCTGGTCGT 2038
Query 2061 GGGTGAAACAGAAGCTGCTACAGGACAGGTGAGTGTTCGTGTGAGAGACAATGCAGCCCA 2120
||||||||| || ||||||||||||||||||||||||||| || |||||| |||||||||
Sbjct 2039 GGGTGAAACTGAGGCTGCTACAGGACAGGTGAGTGTTCGTTTGCGAGACAGTGCAGCCCA 2098
Query 2121 CTCCGTGAAGAGCATTGAGGATTTGCTGGAAGAATTCAAGGCCAAGACTGCCGAATTTGT 2180
||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 2099 CTCTGTGAAGAGCATTGAGGATTTGCTAGAAGAATTCAAGGCCAAGATTGCCGAATTTGT 2158
Query 2181 ATGA 2184
||||
Sbjct 2159 ATGA 2162
> Ahg920738 jgi|Araly1|920738|scaffold_102019.1
Length=1905
Score = 1003 bits (543), Expect = 0.0
Identities = 1188/1485 (80%), Gaps = 101/1485 (7%)
Strand=Plus/Plus
Query 668 AGGAAGCACAACCATTTGAAAGGATTGAAGTGACGAAGGATCAGGCACTCGAGATGTTTT 727
|||||| ||||||||||||||||||| |||||| || |||||||| || ||||||||||
Sbjct 372 AGGAAGGACAACCATTTGAAAGGATTCTAGTGACCAAAGATCAGGCTCTTGAGATGTTTT 431
Query 728 CTGAGAA-TAATTTTAAGGTTGAACTCATCAATG---GTTTGCCTGCAGAC-ATGACCAT 782
|||| || | | |||||||||||| | ||||||| ||| ||| |||| | |||||
Sbjct 432 CTGATAATTTA-TTTAAGGTTGAAATTATCAATGACAACTTGGCTGAAGACGA-GACCAC 489
Query 783 TACTGTCTACAGATGTGGCCCTTTGGTGGATTTGTGTCGTGGACCGCACATACCAAATAC 842
||| ||||||||||||||||| ||||| ||| ||||||||||||| || |||||||||||
Sbjct 490 TACAGTCTACAGATGTGGCCCATTGGTTGATCTGTGTCGTGGACCACATATACCAAATAC 549
Query 843 TTCCTTTGTGAAAGCGTTCAAGTGTTTGAGGGCCTCATCAGCTTACTGGAAGGGTGACAA 902
||||||||||||||| ||||||||||||| ||| ||||| || |||||||| ||||||||
Sbjct 550 TTCCTTTGTGAAAGCTTTCAAGTGTTTGAAGGCTTCATCCGCATACTGGAAAGGTGACAA 609
Query 903 AGACCGTGAGAGCTTGCAGAGAGTTTATGGGATATCTTATCCTGATCAGAAGCAGCTGAA 962
|||||| || |||||||||||||| ||||||||||||||||| ||| | ||||| || ||
Sbjct 610 AGACCGCGAAAGCTTGCAGAGAGTGTATGGGATATCTTATCCGGATGATAAGCAACTCAA 669
Query 963 GAAATATCTCCAA-TTTCTAGAAGAAGCCAA-AAAGTATGACCACAGACTATTGGGCCAA 1020
| | ||||| || | | ||||||||||||| | | |||||||||||||| | |||||||
Sbjct 670 GGACTATCT-TAAGTCTATAGAAGAAGCCAAGATA-TATGACCACAGACTCTCGGGCCAA 727
Query 1021 AAGCAGGAACTCTTCTTTAGTCATCAACTCAGCCCTGGGAGTTATTTCTTCCTTCCAC-T 1079
|||||||||| |||||| ||| | |||||| ||||| | || | ||| ||| |||| |
Sbjct 728 CAGCAGGAACTTTTCTTTTCTCACCCACTCAGTCCTGGAAATTGTATCTACCTCCCACAT 787
Query 1080 CGGCACTCGTGTATATAACAGGTTGATGGACTTCATT-AAGAACCAATACTGGCACAGGG 1138
|||||||| || ||||||| ||||||||| ||| || ||||| |||| ||| | | ||
Sbjct 788 -GGCACTCGCGTCTATAACAAGTTGATGGAATTC-TTCAAGAAAGAATATTGGAAAATGG 845
Query 1139 GTTACACAGAGGTTATTACACCAAATATGTACAACATGGAGTTGTGGCAAACATCCGGAC 1198
||||||| ||||| ||||||||| ||| |||| |||||| || ||| ||||||| |||
Sbjct 846 GTTACACTGAGGTCATTACACCAGTTATTTACACCATGGATTTCTGGGAAACATCAAGAC 905
Query 1199 ATGCTGACA-ATTACAAGGATAATATG-T----TTACG--TTT---A-A----TATTGA- 1241
||||||| | | ||| || | |||||| | ||| | ||| | | |||||
Sbjct 906 ATGCTGA-ATACTACCAGAAAAATATGTTCAAGTTA-GATTTTCAAACACCCGGATTGAC 963
Query 1242 -G--A-AGCA-AGAGTTCGGGCTCAAACCTATGAATTGTCC-TGGTCACTGCTTGATATT 1295
| | | || | | | |||| |||||| ||||||||| || |||||||||||||| ||
Sbjct 964 TGTCATA-CATA-ACTACGGGATCAAACATATGAATTG-CCAGGGTCACTGCTTGATGTT 1020
Query 1296 CCAGCATAGGGTTCGCTCATATAGAGAGTTACCTATGAGACTGGCCGACTTTGGAGTGTT 1355
|| | | | | | | | | | | ||||| || | |||||| ||||||||| |||
Sbjct 1021 CC-G-ACACAG-T-G----T-T-CA-A-TTACCCATTAAACTGGCTGACTTTGGACCGTT 1068
Query 1356 ACACCGCAATGAGGCAAGTGGAGCA-CTTAGTGGATTGACTCGTGTCCGACGGTTCCAGC 1414
| | ||||||||||||| || | |||||||| ||||| |||||||||| |||||| |
Sbjct 1069 GTATCAAAATGAGGCAAGTGAAG-ATCTTAGTGGGTTGACCCGTGTCCGACAGTTCCAAC 1127
Query 1415 AGGATGATGCACACATATTCTGTACAACG-GA-ACAGGTTAAGGGAGAAGTGCAG-GGTG 1471
||||||||||||||||||||||| | || || |||||||| | ||||||| || |||
Sbjct 1128 AGGATGATGCACACATATTCTGT--AGCGAGACGCAGGTTAAAGAAGAAGTG-AGAGGTA 1184
Query 1472 TGTTGGAGTTCATTGACTACG-TGTACA-AAGTTTTCGGGTTTACCTATGAGCTAAAACT 1529
| ||||| || ||||||| | | |||| || ||| |||||||||||||||||||| ||
Sbjct 1185 TATTGGATTTTGTTGACTATGCT-TACACAAAATTT-GGGTTTACCTATGAGCTAAAGCT 1242
Query 1530 TTCAACGAGGCCAGAGAAGTACCTTGGAGATTTGGAAACATGGGATAAAGCTGAAG-CGG 1588
||||||||||||| |||| ||||||||||||||||||| |||||| ||||||| || |
Sbjct 1243 TTCAACGAGGCCAAAGAAATACCTTGGAGATTTGGAAAAATGGGACAAAGCTG-AGAAAG 1301
Query 1589 ATCTCAAAGAAGCTA-TAGAA-GCTTTTGGAAAGCCATTAGTGTT--GAACGAAGGAGAT 1644
|||| ||||||| | || || | |||||||||| || | | ||| ||| |||||||
Sbjct 1302 ATCTTGAAGAAGC-ACTA-AATGATTTTGGAAAGACA-T-GGGTTAAAAACAAAGGAGAC 1357
Query 1645 GGTGCATTTTATGGTCCAAAGATAGACATCACAGTTTCTGATGCAATGAATAGGAAATTC 1704
|| | ||||||||| |||||||||||||| ||||| | |||||||||||| |||||||||
Sbjct 1358 GGGGAATTTTATGGCCCAAAGATAGACATAACAGTGTATGATGCAATGAAAAGGAAATTC 1417
Query 1705 CAGTGTGCTACTTTACAGCTTGATTTTCAACTTCC-GATTCGCTTC-AACTTGGAATACG 1762
|||||||||||| |||||||||||||||| ||||| || ||||||| ||| |||||||
Sbjct 1418 CAGTGTGCTACTATACAGCTTGATTTTCACCTTCCTGA-TCGCTTCAAAC-TGGAATATT 1475
Query 1763 CAGCTGAGGATGAAGC-GAAAAAGAGTAGACCTGTAATGATACATAGAGCCGTGTTGGGA 1821
|||||||||||||| | || | |||| || |||| ||||||||||||| ||||||||
Sbjct 1476 CAGCTGAGGATGAAACGGAGATAGAG-AGTTCTGTGCTGATACATAGAGCGGTGTTGGGC 1534
Query 1822 TCTGTGGAACGTATGTTTGCCATATTGTTGGAGCATTACAAAGGAAAATGGCCCTTCTGG 1881
||||| || ||| | ||||||||||||||||| || ||||||||||||| ||||||||||
Sbjct 1535 TCTGTTGAGCGTCTTTTTGCCATATTGTTGGAACAGTACAAAGGAAAATTGCCCTTCTGG 1594
Query 1882 ATTAGTCCGCGACAGGCCATAGTTTGTC-CTATATCAGAGAAATCTCAG--CAATATGCA 1938
||||||| || |||||||||||||| | || | |||||| | |||| | | || |||
Sbjct 1595 CTTAGTCCCCGCCAGGCCATAGTTTG-CTCTGTTTCAGAGGATTCTC-GTTC-CTACGCA 1651
Query 1939 GAA-AAGGTTCA-AAAGCAAATTAAAGATGCTGGGTTCTATGTTGATGCTGACTTAACAG 1996
|| |||| | | | | | |||| | || ||||| | ||||||||||| |||| |||||
Sbjct 1652 -AACAAGG-TGAGAGATCGAATTCACGAAGCTGGCTACTATGTTGATGTTGACACAACAG 1709
Query 1997 ACAGAA-AGAT-AGATAAAAAGGTGCGAGAAGCTCAGCTTGCTCAGTACAACTACATTCT 2054
| |||| | | || | | ||||||| |||||||||| |||| |||||||||||||||||
Sbjct 1710 ATAGAACCG-TCAG-TGAGAAGGTGCAAGAAGCTCAGGTTGCACAGTACAACTACATTCT 1767
Query 2055 GGTCGTGGGTGAA-ACAGAAGCT-GCTACAGGACAGGTGAGTGTT 2097
|||||||||||| | ||| ||| | || |||||||||| ||||
Sbjct 1768 GGTCGTGGGTGATGA-AGAGGCTAGA-ACGGGACAGGTGACTGTT 1810
> Ahg472010 jgi|Araly1|472010|fgenesh2_kg.1__1964__AT1G17960.1
Length=1529
Score = 667 bits (361), Expect = 0.0
Identities = 665/804 (83%), Gaps = 51/804 (6%)
Strand=Plus/Plus
Query 1320 AGAGTTACCTATGAGACTGGCCGACTTTGGAGTGTTACACCGCAATGAGGCAAGTGGAGC 1379
||| || || || ||| |||| || |||||||||||||| || ||||||| |||||||||
Sbjct 532 AGAATTGCCCATTAGAATGGCTGATTTTGGAGTGTTACATCGAAATGAGGAAAGTGGAGC 591
Query 1380 ACTTAGTGGATTGACTCGTGTCCGACGGTTC-CAGCAGGATGATGCACACATATTCTGTA 1438
|||||||||| |||| ||||||||||||||| | |||||||||||||||||||||||||
Sbjct 592 ACTTAGTGGAATGACCCGTGTCCGACGGTTCGTA-CAGGATGATGCACACATATTCTGTA 650
Query 1439 CAACGGAACAGGTTAAGG-G-AGAAGTGCAGGGTGTGTTGGAGTTCATTGACTACGTGTA 1496
| ||| |||||| || | ||||||| ||||||||||||| |||||||||| || ||
Sbjct 651 GAGTGGATCAGGTT--GGAGAAGAAGTGAAGGGTGTGTTGGATTTCATTGACTGTGTTTA 708
Query 1497 CAAAGT-TTTCGGGTTTACCTATGAGCTAAAACTTTCAACGAGGCC--AG-AGAAGTACC 1552
|||||| ||| |||||||||||||||||||| |||||||| ||| || |||||||||
Sbjct 709 CAAAGTATTT-GGGTTTACCTATGAGCTAAAGCTTTCAAC---GCCAGAGAAGAAGTACC 764
Query 1553 TTGGAGATTTGGAAACATGGGATAAAGCTGAAGCGGATC-TCAAAGAAGCTATAGA-AGC 1610
||||||||||||||||||||| |||||||||| ||||| | ||| |||| |||| |
Sbjct 765 TTGGAGATTTGGAAACATGGGTTAAAGCTGAAAAGGATCTTGAAA-AAGCGCTAGATA-A 822
Query 1611 TTTTGGAAAGCCATTAGTGT-TGAACGAAGGAGATGGTGCATTTTATGGTCCAAAGATAG 1669
|||||||||||||| || | | ||| ||||||| ||||||||||| || ||||||||||
Sbjct 823 TTTTGGAAAGCCATGGGT-TATAAACAAAGGAGACGGTGCATTTTACGGCCCAAAGATAG 881
Query 1670 ACATCACAGTTTCTGATGCAATGAATAGGAAATTCCAGTGTGCTACTTTACAGCTTGATT 1729
|||| ||||| || ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 882 ACATAACAGTGTCGGATGCAATGAAAAGGAAATTCCAGTGTGCTACTTTACAGCTTGATT 941
Query 1730 TTCAACTTCCGA-TTCGCTTCAA-CTTGGAATACGCAGCTGAGGATGAAGCGAAAAAGAG 1787
||||||||||| || ||||||| || | ||||| | || | | || |||||| |||
Sbjct 942 TTCAACTTCCGGCTT-GCTTCAAACT-GAAATACATAACTAAAAAA-AA-CGAAAAGGAG 997
Query 1788 TAGACCTGTAATGATACATAGAGCCGTGTTGGGATCTGTGGAACGTATGTTTGCCATATT 1847
|||||||| |||||||||||||| |||||||||||||| || |||||||||||||||||
Sbjct 998 -AGACCTGTGATGATACATAGAGCGGTGTTGGGATCTGTTGAGCGTATGTTTGCCATATT 1056
Query 1848 GTTGGAGCATTACAAAGGAAAATGGCCCTTCTGGATTAGTCCGCGACAGGCCATAGTTTG 1907
|||||||||||||||||||| ||||| |||||| ||||||| || ||||||||||||||
Sbjct 1057 GTTGGAGCATTACAAAGGAATCTGGCCTTTCTGGCTTAGTCCCCGCCAGGCCATAGTTTG 1116
Query 1908 -TC-CTATATCAGAGAAATCTCAG--CAATATGCAGAAA-AGGTTCAAAAGCAAATTAAA 1962
|| || | |||||| | | | || | |||||| ||| |||| ||||| || ||| ||
Sbjct 1117 CTCTCT-T-TCAGAGGATTAT-AGTTCC-TATGCA-AAACAGGTACAAAAACAGATTCAA 1171
Query 1963 GATGCTGGGTTCTATGTTGATGCTGACTTAACAG--ACAGAAAG-ATA-GATAAAAAGGT 2018
|| ||||||| |||||||||| ||| | || || |||||| | || | |||||||||
Sbjct 1172 GAAGCTGGGTACTATGTTGATATTGA-TGAA-AGTGACAGAA-GCATCTG-TAAAAAGGT 1227
Query 2019 G-CGAGAAGCTCAG-CTTGCTC-AGTACAACTACATTCTGGTCGTGGGTGAAACAGAAGC 2075
| | ||| |||| | || || | | ||||||||||| |||||||| ||| ||| ||| ||
Sbjct 1228 GGC-AGATGCTCGGGCT-GCACCA-TACAACTACATACTGGTCGTAGGTCAAAAAGAGGC 1284
Query 2076 TGCTACAGGACAGGTGAGTGTTCG 2099
| | || |||||||||| |||||
Sbjct 1285 TACAACGGGACAGGTGACAGTTCG 1308
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90235790405
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5