BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G26860.1
Length=3327
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489519 jgi|Araly1|489519|fgenesh2_kg.6__2653__AT5G26860.1 4968 0.0
Ahg477873 jgi|Araly1|477873|fgenesh2_kg.3__574__AT3G05790.1 1225 0.0
Ahg903431 jgi|Araly1|903431|Al_scaffold_0003_559 941 0.0
Ahg359743 jgi|Araly1|359743|fgenesh1_pg.C_scaffold_845000001 211 2e-53
> Ahg489519 jgi|Araly1|489519|fgenesh2_kg.6__2653__AT5G26860.1
Length=3264
Score = 4968 bits (2690), Expect = 0.0
Identities = 3100/3289 (94%), Gaps = 64/3289 (2%)
Strand=Plus/Plus
Query 1 ATGAAGGGCTTTGATACTAATCTTCGTCTACAGGCTTCTTCTCCAGAATTCTCCAATGGT 60
||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||
Sbjct 1 ATGAAGGGCTTTGATACTAATCTTCGTCTGCAGGCTTCTTCTCGAGAACTCTCCAATGGT 60
Query 61 TTCTTGC-CTAAAAGGCAAAACTTTATAAAACTCAATCGCAGAAATTG---TTACCCCAG 116
||||||| | |||||||||||||||||||| ||||||| ||||||||| |||||| ||
Sbjct 61 TTCTTGCAC-AAAAGGCAAAACTTTATAAACCTCAATCTCAGAAATTGTTATTACCCAAG 119
Query 117 ATCTTCTTTCTCTCCCACCATGTTAAAGCTCTTCACTTCCTCCGCCTCTCGAGTCCACCA 176
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 120 ATCTTCTTTCTCTCCCACCATGTTAAAGCTCTTCACTTCGTCCGCTTCTCGAGTCCAACA 179
Query 177 TTTGACTCCGGTAAGTAGGGTCGTCGGGTCTTCTCCAGTGGAGTCTCCATTGTTCAAAGC 236
||||||||||| || || || |||||||||||||||||||||||||||||||| |||||
Sbjct 180 TTTGACTCCGGCAATTA-GG--GTCGGGTCTTCTCCAGTGGAGTCTCCATTGTTTAAAGC 236
Query 237 GTTGAGTCAAATCACTGGGTGGAATCGGCGATCTACTTCGTTGGGTCATCGTGCTTTCTT 296
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 237 GTTGAGTCAAATCACTGGGTGGAATCGGCGATCTGCTTCGTTGGGTCATCGTGCTTTCTT 296
Query 297 CTGCTCTGAGCCTACCAATGGAGAGGCGGCGGCTGAAGCTGAAACTAAGGCGGTGGAGTC 356
||| |||||||||||| ||||||||||||||||||| | |||| ||||| |||| |||||
Sbjct 297 CTGTTCTGAGCCTACCGATGGAGAGGCGGCGGCTGAGGTTGAAGCTAAGACGGTCGAGTC 356
Query 357 CGATTCTGAAGTGTCTGACTCCAAATCTTCGTCTGCGATTGTGCCCACTAACCCTAGGCC 416
||||||||||| ||||||||| ||||| ||||||||||||||| ||||||||||||||||
Sbjct 357 CGATTCTGAAGGGTCTGACTCAAAATCGTCGTCTGCGATTGTGTCCACTAACCCTAGGCC 416
Query 417 TGAAGATTGTTTAACGGTTCTAGCATTGCCGGTGCCACATAGGCCGCTTTTTCCTGGTTT 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TGAAGATTGTTTAACGGTTCTAGCATTGCCGGTGCCACATAGGCCGCTTTTTCCTGGTTT 476
Query 477 TTACATGCCAATCTATGTCAAGGATCCTAAAGTACTCGCAGCCTTACAAGAGAGCAGAAG 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TTACATGCCAATCTATGTCAAGGATCCTAAAGTACTCGCAGCCTTACAAGAGAGCAGAAG 536
Query 537 ACGACAAGCTCCATATGCAGGAGCTTTCCTTCTGAAGGATGACCCATCAGCTGATTCATC 596
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 537 ACGGCAAGCTCCATATGCAGGAGCTTTCCTTCTTAAGGATGACCCATCAGCTGATTCATC 596
Query 597 TTCAAGCACTGACGCAGaaaaaaaCATAAATGAGCTGAAAGGGAAAGAGTTGCTTAACCG 656
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TTCAAGTACTGACGCAGAAAAAAACATAAATGAGCTGAAAGGGAAAGAGTTGCTTAACCG 656
Query 657 GCTTCACGAAGTTGGCACACTTGCTCAGATTTCAAGTATCCAAGGAGACCAAGTTATCCT 716
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 657 GCTTCACGAAGTTGGCACACTTGCTCAGATTTCAAGTATCCAAGGGGACCAAGTTATACT 716
Query 717 TGTTGGTCACAGGCGACTTCGCATAAAAGAGATGGTGAGCGAAGAACCACTTACCGTCAA 776
||||||||| ||| |||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 717 TGTTGGTCATAGGAGACTTCGCATAACAGAGATGGTGAGTGAAGAACCACTTACCGTCAA 776
Query 777 AGTCGATCATCTTAAGGATAATCCGTTTGACATGGACGATGATGTCGTCAAGGCAACATC 836
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 777 AGTCGATCATCTTAAGGATAATCCCTTTGACATGGACGATGATGTCATCAAGGCAACATC 836
Query 837 TTTTGAAGTTATTTCAACTCTTAGGGATGTACTGAAGACAAGTTCACTATGGAGAGATCA 896
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 837 TTTTGAAGTTATTTCAACTCTTAGGGATGTACTAAAGACAAGTTCACTATGGAGAGATCA 896
Query 897 CGTTCAGACATAT----A--C----C-CA--G-----CATATAGGTGATTTCACTTATCC 938
|||||| |||||| | | | || | |||||||||||||||||||||||
Sbjct 897 CGTTCAAACATATACCCAGGCATGTCTCAGGGTACAACATATAGGTGATTTCACTTATCC 956
Query 939 ACGACTAGCTGATTTTGGAGCGGCGATATGTGGCGCAAATAGGCATCAAGCTCAAGAAGT 998
|||| |||| |||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 957 ACGATTAGCCGATTTTGGAGCGGCTATATGTGGTGCAAATAGGCATCAAGCTCAAGAAGT 1016
Query 999 TCTTGAAGAACTGGATGTTCACAAACGTCTGCGGTTGACGCTGGAATTGATgaaaaaaga 1058
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1017 TCTTGAAGAACTGGATGTTCACAAACGTCTCCGGTTGACGCTGGAATTGATGAAAAAAGA 1076
Query 1059 aatggaaattagcaagatacaggaaaccatagcaaaagcaattgaagaaaaaatTAGCGG 1118
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1077 AATGGAAATTAGCAAGATTCAGGAATCCATAGCAAAAGCAATTGAAGAAAAAATTAGCGG 1136
Query 1119 TGAGCAACGTCGTTACTTGCTAAATGAGCAGCTCAAGGCTATAAAGAAGGAGCTTGGTGT 1178
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 TGAGCAACGTCGGTACTTGCTAAATGAGCAGCTCAAGGCTATAAAGAAGGAGCTTGGTGT 1196
Query 1179 GGAGACAGATGACAAATCTGCACTTTCTGCAAAGTTTAAGGAAAGGATTGAGCCTAACAA 1238
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1197 GGAGACAGATGACAAATCTGCACTTTCTGCAAAGTTTAAGGAAAGGATTGAGCCCAACAA 1256
Query 1239 GGAAAAAATTCCAGCGCATGTATTACAAGTCATAGAAGAAGAGCTTACAAAGCTGCAGCT 1298
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1257 GGAAAAAATTCCAGCACATGTATTACAAGTCATAGAAGAGGAGCTTACAAAGCTGCAGCT 1316
Query 1299 GTTAGAGGCGAGTTCAAGCGAGTTTAACGTGACGCGTAACTACCTTGATTGGTTGACCAT 1358
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1317 GTTAGAGGCGAGTTCAAGTGAATTTAACGTGACGCGTAACTACCTTGATTGGTTGACCAT 1376
Query 1359 ATTGCCTTGGGGAAATTACAGTAATGAAAACTTTGATGTTGCACGGGCGCAAACAATTCT 1418
|||||||||||||||||||||| ||||||| |||||||||| |||| |||| ||||||
Sbjct 1377 ATTGCCTTGGGGAAATTACAGTGATGAAAATTTTGATGTTGTGGGGGCACAAAAAATTCT 1436
Query 1419 TGACGAGGATCACTATGGCTTATCTGACGTAAAGGAAAGAATACTGGAATTTATTGCAGT 1478
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1437 TGACGAGGATCACTATGGCTTATCAGACGTAAAGGAAAGAATACTGGAATTTATTGCGGT 1496
Query 1479 GGGAAGACTTAGAGGCACTTCACAAGGGAAAATCATCTGCCTCTCCGGCCCTCCTGGAGT 1538
||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct 1497 GGGAAGACTTAGAGGCACTTCGCAAGGGAAAATCATATGCCTCTCGGGCCCTCCTGGAGT 1556
Query 1539 AGGCAAAACTAGTATTGGGCGGTCTATTGCACGTGCTCTTAATCGCAAATTTTTCCGGTT 1598
|||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||
Sbjct 1557 AGGCAAAACTAGTATTGGTCGTTCTATTGCACGTGCTCTTAATCGCAAGTTTTTCCGGTT 1616
Query 1599 CTCTGTTGGAGGGTTAGCAGATGTCGCTGAGATCAAGGGGCATCGTCGGACATATGTTGG 1658
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1617 CTCTGTGGGAGGGTTAGCAGATGTCGCTGAGATCAAGGGGCATCGTCGAACATATGTTGG 1676
Query 1659 CGCCATGCCAGGAAAGATGGTGCAATGTCTAAAGAGTGTGGGGACAGCAAATCCTCTTGT 1718
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1677 CGCCATGCCAGGAAAGATGGTGCAGTGTCTAAAGAGTGTGGGGACAGCAAATCCTCTTGT 1736
Query 1719 TCTAATCGATGAGATTGATAAGCTGGGGAGAGGCCATGCTGGTGACCCGGCCAGTGCTTT 1778
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1737 TCTAATCGATGAGATTGATAAGCTCGGGAGAGGCCATGCTGGTGACCCAGCCAGTGCTTT 1796
Query 1779 GTTGGAGCTTCTGGATCCAGAGCAAAACGCAAATTTTCTGGACCACTATCTCGACGTTAC 1838
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1797 GTTGGAGCTTCTGGATCCAGAGCAAAACGCAAATTTTCTGGACCACTATCTCGATGTTAC 1856
Query 1839 TATAGATCTATCAAAGGTTTTATTTGTGTGCACAGCAAATGTGATAGACATGATTCCAAA 1898
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1857 TATTGATCTATCAAAGGTTTTATTTGTGTGCACAGCAAATGTGATAGACATGATTCCAAA 1916
Query 1899 TCCTTTGCTAGACAGAATGGAGGTGATTTCTATTGCTGGGTATATCACTGATGAAAAAGT 1958
|||| ||||||||||||||||||||||||||||||| |||||||||||||| || |||||
Sbjct 1917 TCCTCTGCTAGACAGAATGGAGGTGATTTCTATTGCGGGGTATATCACTGACGAGAAAGT 1976
Query 1959 TCATATCGCAAGAGACTATTTGGAAAAAACTGCACGTGGAGATTGTGGTGTCAAGCCTGA 2018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1977 TCATATCGCAAGAGACTATTTGGAAAAAACTGCACGTGGAGATTGTGGTGTCAAGCCTGA 2036
Query 2019 ACAGGTTGAGGTGAGTGATGCAGCGCTTCTTTCCTTGATAGAAAATTACTGCAGAGAAGC 2078
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2037 ACAGGTTGAGGTGAGTGATGCAGCTCTTCTTTCCTTGATAGAAAATTACTGCAGAGAAGC 2096
Query 2079 AGGTGTTAGGAATCTCCAGAAACAGATCGAGAAGATTTACCGTAAGATTGCACTTAAATT 2138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2097 AGGTGTTAGGAATCTCCAGAAACAGATCGAGAAGATTTACCGTAAGATTGCACTTAAATT 2156
Query 2139 AGTGCGTGAAGGAGCAGTCCCCGAAGAGCCTGCAGTTGCAAGTGATCCTGAAGAAGCTGA 2198
|||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||
Sbjct 2157 AGTGCGTGAAGGAGCAGTTGCCGAAGAGCCTGCAGTTGCAATTGATCCCGAAGAAGCTGA 2216
Query 2199 AATCGTGGCTGATGTTGGCGAATCCATAGAGAATCATACTGTCGAAGAAAACACTGTGTC 2258
||| ||||| || |||||||||||| |||||||||||||||| |||||||| |||||||
Sbjct 2217 AATTGTGGCCGACGTTGGCGAATCCCCAGAGAATCATACTGTCAAAGAAAACCCTGTGTC 2276
Query 2259 CTCTGCTGAAGAACCAAAGGAAGAGGCCCAAACCGAGAAGATAGCTATTGAAACGGTTAT 2318
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 2277 CTCTGCTGAAGAACCAAAGGAAGAGGCCCAAACCAAGAAGATAGCTATTGAAAAGGTTAT 2336
Query 2319 GATTGATGAGTCAAACCTTGCGGATTATGTAGGAAAACCGGTATTCCATGCAGAGAAGCT 2378
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2337 GATTGATGAGTCAAACCTTGCGGATTATGTAGGAAAACCGGTATTCCACGCAGAGAAGCT 2396
Query 2379 CTATGAGCAGACACCGGTAGGTGTTGTGATGGGTCTAGCTTGGACATCAATGGGTGGTTC 2438
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2397 CTATGAGCAGACACCGGTAGGAGTTGTGATGGGTCTAGCTTGGACATCAATGGGTGGTTC 2456
Query 2439 AACATTGTACATAGAGACGACTGTTGTGGAGGAAGGGGAAGGTAAAGGTGGCCTGAATAT 2498
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2457 AACATTGTACATAGAGACGACTGTTGTGGAGGAAGGGGAAGGTAAAGGTGGCCTCAATAT 2516
Query 2499 AACGGGTCAGCTCGGTGATGTGATGAAAGAAAGTGCACAAATTGCTCACACAGTCGCCAG 2558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517 AACGGGTCAGCTCGGTGATGTGATGAAAGAAAGTGCACAAATTGCTCACACAGTCGCCAG 2576
Query 2559 -AAAGATCATGCTAGAGAAAGAACCAGAGAATCAGTTCTTTGCAAACTCCAAGCTTCATC 2617
||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2577 GAAA-ATCATGCTAGTGAAAGAACCAGAGAATCAGTTCTTTGCAAACTCCAAGCTTCATC 2635
Query 2618 TCCATGTTCCTGCAGGAGCCACTCCCAAGGATGGTCCAAGTGCAGGCTGCACCATGATCA 2677
|||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 2636 TCCATGTTCCTGCAGGAGCCACACCCAAGGACGGTCCAAGTGCAGGATGCACCATGATCA 2695
Query 2678 CATCTTTACTATCACTTGCCACGAAGAAACCCGTTAGGAAGGACCTTGCAATGACTGGAG 2737
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 2696 CCTCTTTACTATCACTTGCCACGAAGAAACCCGTTAGGAAGGATCTTGCAATGACCGGAG 2755
Query 2738 AAGTCACACTAACCGGAAGAATTCTTCCTATTGGTGGGGTGAAAGAGAAAACTATAGCGG 2797
||||||||||||| ||||| ||||||||||| ||||||||||| |||||||||||||| |
Sbjct 2756 AAGTCACACTAACTGGAAGGATTCTTCCTATCGGTGGGGTGAAGGAGAAAACTATAGCCG 2815
Query 2798 CGAGGCGGAGTCAGATTAAAACAATAATATTTCCAGAGGCAAACCGGAGAGACTTTGATG 2857
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2816 CGAGGCGGAGTCAGATTAAAACAATAATATTTCCGGAGGCAAACCGGAGAGACTTTGATG 2875
Query 2858 AGCTGGCAGAGAATGTGAAAGAAGGGCTTAATGTTCACTTCGTGGATGACTATGGAAAGA 2917
||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 2876 AGCTGGCGGAGAATGTGAAAGAAGGGCTTGATGTTCACTTTGTGGATGACTATGGAAAGA 2935
Query 2918 TCTTCGAGCTTGCCTTTGGCTATGACAAACAAGAAGACTGAGAACACACATAAGCCACGT 2977
||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||| |
Sbjct 2936 TCTTCGAGCTTGCCTTTGGCTATGACAAACAAGAAGACTGAGAGGACAGAGAAGCCACTT 2995
Query 2978 TGACCTTTTGTCATCTGTTGTTGTCTCCATTTAAAC---AA-CACTACCA---TTCTTGA 3030
|||||||| |||||||||||||||||||||||||| || || ||||| |||||||
Sbjct 2996 TGACCTTT-GTCATCTGTTGTTGTCTCCATTTAAATTTTAAACAGTACCACCATTCTTGA 3054
Query 3031 TTCTCTTT-GATCTTTTT--CTTCCTTCAAGAAGAAAGTTATTCTGTAACttttt-ttt- 3085
|||||||| | | ||||| ||| ||||||||||||||||||| ||||||||||| |||
Sbjct 3055 TTCTCTTTTGTTTTTTTTTTCTTTCTTCAAGAAGAAAGTTATTGTGTAACTTTTTCTTTC 3114
Query 3086 t----ATGATTAGGGTAATTTATTGGTGGTTGGATTTTATTATTTTGGTATATAACCAAA 3141
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 3115 TTTTTATGATTAGGGTGATTTATTGGTGGTTGGATTTTATTATTTTGGTATATAACCAAA 3174
Query 3142 GCCAAATATCATAATAAGACATCAGAACAAAGTaaaaaaaaCAAAGTTGTTTCTCATTTT 3201
||||||| ||||| ||||||| || | |||| |||||||||||||||
Sbjct 3175 GCCAAAT--CATAA---GACATCA-AA-A---TAAA---------GTTGTTTCTCATTTT 3215
Query 3202 GTGCTTGTAATTTCATCAACATATTCGCGTATTACTTTCACTGTTGCTA 3250
|| ||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 3216 TTGTTTGTAATTTCATCAACATATTAGCGTATTAGTTTCACTGTTGCTA 3264
> Ahg477873 jgi|Araly1|477873|fgenesh2_kg.3__574__AT3G05790.1
Length=2823
Score = 1225 bits (663), Expect = 0.0
Identities = 1078/1277 (84%), Gaps = 34/1277 (3%)
Strand=Plus/Plus
Query 916 CATATAGGTGATTTCACTTATCCACGACTAGCTGATTTTGGAG-CGGCGATATGTGGCGC 974
||||||||||| |||| ||||||| | |||| |||||||||| ||| ||| | ||||||
Sbjct 748 CATATAGGTGAATTCAATTATCCAAGGTTAGCCGATTTTGGAGCCGG-GATCTCTGGCGC 806
Query 975 AAATAGGCATCAAGCTCAAGAAGTTCTTGAAGAACTGGATGTTCACAAACGTCTGCG-GT 1033
|| | |||||| ||| | |||||| |||||||||||||||| ||||||||| | ||
Sbjct 807 TAACAAACATCAAAATCAGGGGGTTCTTAAAGAACTGGATGTTCATAAACGTCTG-GAGT 865
Query 1034 TGACGCTGGAATTGATgaaaaaagaaatggaaattagcaagatacaggaaaccatagcaa 1093
|||||||||||||| ||||||||||| | ||||||| |||||| || ||| |||||||||
Sbjct 866 TGACGCTGGAATTGGTGAAAAAAGAAGTTGAAATTAACAAGATTCAAGAATCCATAGCAA 925
Query 1094 aagcaattgaagaaaaaatTAGCGGTGAGCA-ACGTCGTTA-CTTGCTAAATGAGCAGCT 1151
|||| ||||||||||| |||| || || || |||||| || | | ||||| |||||| |
Sbjct 926 AAGCTGTTGAAGAAAAATTTAGTGGCGA-CAGACGTCG-TATCATACTAAAGGAGCAGAT 983
Query 1152 CAAGGCTATAAAGAAGGAGCTTGGTGTGGAGACAGATGACAAATCTGCACTTTCTGCAAA 1211
||| |||||||| ||||||||||| ||||||||||| |||||||||||||||||| |||
Sbjct 984 CAATGCTATAAAAAAGGAGCTTGGCGTGGAGACAGACAACAAATCTGCACTTTCTGAAAA 1043
Query 1212 GTTTAAGGAAAGGATTGAGCCTAACAAGGAAAAAATTCCAGCGCATGTATTACAAGTCAT 1271
||||| || ||| |||| |||| || || || ||||||| |||||| || |||||||
Sbjct 1044 GTTTAGGGGGAGGGTTGACCCTATTAAAGACAAGATTCCAGAACATGTACTAAAAGTCAT 1103
Query 1272 AGAAGAAGAGCTTACAAAGCTGCAGCTGTTAGAGGCGAGTTCAAGCGAGTTTAACGTGAC 1331
|||||||||||||| ||| |||||||||||||| | ||||| ||||| | | |||||
Sbjct 1104 AGAAGAAGAGCTTAAAAAACTGCAGCTGTTAGAAACCAGTTCCAGCGAATACGATGTGAC 1163
Query 1332 GC-GTAACTACCTTGATTGGTTGACCATATTGCCTTGGGG-AAATTACAGTAATGAAAAC 1389
| |||||||||||||||||||||| | |||||||||| ||||| |||| |||| ||
Sbjct 1164 -CTATAACTACCTTGATTGGTTGACCGTGCTGCCTTGGGGAAAATT-CAGTGATGAGAAT 1221
Query 1390 TTTGATGTTGC-ACGGGC-GCAAACA-ATTCTTGACGAGGATCACTATGGCTTATCTGAC 1446
||||||| | | |||||| | ||| | ||||||||||||||||| || || ||||||||
Sbjct 1222 TTTGATG-TCCTACGGGCAG-AAA-AGATTCTTGACGAGGATCATTACGGATTATCTGAT 1278
Query 1447 GTAAAGGAAAGAATACTGGAATTTATTGCAGTGGGAAGACTTAGAGGCACTTCACAAGGG 1506
||||| ||||||||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct 1279 GTAAAAGAAAGAATACTAGAGTTTATTGCTGTGGGAAGACTTAGAGGCACTTCACAAGGG 1338
Query 1507 AAAATCATCTGCCTCTCCGGCCCTCCTGGAGTAGGCAAAACTAGTATTGGGCGGTCTATT 1566
|| ||||| || ||||| ||||| ||||||||||| |||||||| |||||||| || |||
Sbjct 1339 AAGATCATTTGTCTCTCTGGCCCACCTGGAGTAGGTAAAACTAGCATTGGGCGTTCCATT 1398
Query 1567 GCACGTGCTCTTAATCGCAAATTTTTCCGGTTCTCTGTTGGAGGGTTAGCAGATGTCGCT 1626
|||||||||||| | ||||| || |||||||||||||||||||| || | ||||| |||
Sbjct 1399 GCACGTGCTCTTGACCGCAAGTTCTTCCGGTTCTCTGTTGGAGGACTATCCGATGTTGCT 1458
Query 1627 GAGATCAAGGGGCATCGTCGGACATATGTTGGCGCCATGCCAGGAAAGATGGTGCAATGT 1686
||||| |||||||||||||| |||||| |||| |||||||| ||||||||||||||||||
Sbjct 1459 GAGATTAAGGGGCATCGTCGAACATATATTGGTGCCATGCCTGGAAAGATGGTGCAATGT 1518
Query 1687 CTAAAGAGTGTGGGGACAGCAAATCCTCTTGTTCTAATCGATGAGATTGATAAGC-TGG- 1744
||||||| |||||| |||| ||||||||||||||| ||||||||||||||||||| |||
Sbjct 1519 CTAAAGAATGTGGGAACAGAAAATCCTCTTGTTCTGATCGATGAGATTGATAAGCTTGGA 1578
Query 1745 G-GAGAG-GCCATGCTGGTGACCCGGCCAGTGCTTTGTTGGAGCTTCTGGATCCAGAGCA 1802
| || | |||| | ||| ||||| |||||||| ||||||||||| |||||||||||||
Sbjct 1579 GTTAG-GTGCCACGATGGCGACCCAGCCAGTGCAATGTTGGAGCTTTTGGATCCAGAGCA 1637
Query 1803 AAACGCAAATTTTCTGGACCACTATCTCGACGTTACTATAGATC-TATCAAAGGTTTTAT 1861
||| ||||| ||||| |||||||||||| | |||||||| || | |||| ||||||||||
Sbjct 1638 AAATGCAAACTTTCTAGACCACTATCTCAATGTTACTATTGA-CTTATCCAAGGTTTTAT 1696
Query 1862 TTGTGTGCACAGCAAATGTGATAGACATGATTCCAAATCCTTTGCTAGACAGAATGGAGG 1921
|||| ||||||||||| |||| ||| | ||||| | ||| ||||||||||||||||||
Sbjct 1697 TTGTATGCACAGCAAACGTGACAGATACCATTCCGAGTCCCCTGCTAGACAGAATGGAGG 1756
Query 1922 TGATTTCTAT-TGCTGGGTATATCACTGATGA-AAAAGTTCATATCGCAAGAGACTATTT 1979
||||| || | | | ||||| || |||||||| |||| | ||||| || |||||||||||
Sbjct 1757 TGATTACTCTCT-CAGGGTACATTACTGATGAGAAAA-TGCATATTGCTAGAGACTATTT 1814
Query 1980 GGAAAAAACTGCACGTGGAGATTGTGGTGTCAAGCCTGAACAGGTTGAGGTGAGTGATGC 2039
|| ||||||||||| |||||||||| | ||||||||||||||||| ||||| |||||
Sbjct 1815 GGTGAAAACTGCACGCAGAGATTGTGGCATTAAGCCTGAACAGGTTGATGTGAGCGATGC 1874
Query 2040 AGCGCTTCTTTCCTTGATAGAAAATTACTGCAGAGAAGCAGGTGTTAGGAATCTCCAGAA 2099
||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1875 AGCTCTTCTTTCCTTGATAGAAAATTACTGCAGAGAAGCAGGAGTTAGAAATCTCCAGAA 1934
Query 2100 ACAGATCGAGAAGATTTACCGTAAGATTGCACTTAAA-TTAGTGCGTGAAGGAGCAG--T 2156
||||| |||||| ||| ||||||||||| |||||| || ||||| |||| |||| |
Sbjct 1935 GCAGATAGAGAAGGTTTTTCGTAAGATTGCTCTTAAACTT-GTGCGCAAAGGGGCAGCAT 1993
Query 2157 CC-CCGAAGAGCCTGCA 2172
| |||||| |||||||
Sbjct 1994 CAGCCGAAGTGCCTGCA 2010
Score = 479 bits (259), Expect = 6e-134
Identities = 427/509 (84%), Gaps = 8/509 (2%)
Strand=Plus/Plus
Query 415 CCT-GAAGATTGTTTAACGGTTCTAGCATTGCCGGTGCCACATAGGCCGCTTTTTCCTGG 473
||| || |||||| |||||||| |||||||||| |||| || | ||| ||| |||||||
Sbjct 213 CCTCGACGATTGTCTAACGGTTATAGCATTGCCATTGCCTCACAAGCCTCTTATTCCTGG 272
Query 474 TTTTTACATGCCAATCTATGTCAAGGATCCTAAAGTACTCGCAGCCTTACAAGAGAGCAG 533
||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 273 CTTTTACATGCCAATCTATGTCAAGGATCCTAAAGTTCTTGCAGCTTTACAAGAGAGCAG 332
Query 534 AAGACGACAAGCTCCATATGCAGGAGCTTTCCTTCTGAAGGATGACCCATCAGCTGATTC 593
||||| ||||||| |||||| || ||||||||| | ||||||||| | ||| |||| ||
Sbjct 333 AAGACAACAAGCTTTATATGCGGGGGCTTTCCTTTTCAAGGATGACGCGTCAACTGACTC 392
Query 594 ATCTTCAAGCACTGACGCAGaaaaaaa-CATAAATGA-GCTGAAAGGGAAAGAGTTGCTT 651
|||||| ||| |||| | || || | | || | || | ||||||| ||||||||||||
Sbjct 393 ATCTTCTAGCTCTGAAACTGAGAATATTC-TAGA-GAAGTTGAAAGGAAAAGAGTTGCTT 450
Query 652 AACCGGCTTCACGAAGTTGGCACACTTGCTCAGATTTCAAGTATCCAAGGAGACCAAGTT 711
||||| |||| |||||||||||||||||| ||||||||||||||||||| || |||||
Sbjct 451 TACCGGATTCATGAAGTTGGCACACTTGCTAAGATTTCAAGTATCCAAGGTGAGCAAGTC 510
Query 712 ATCCTTGTTGGTCACAGGCGACTTCGCATAAAAGAGATGGTGAGCGAAGAACCACTTACC 771
||||| |||| | ||| |||||||| |||| |||||||||||| ||||| || || |||
Sbjct 511 ATCCTCATTGGCCGCAGACGACTTCGAATAACAGAGATGGTGAGTGAAGATCCTCTAACC 570
Query 772 GTCAAAGTCGATCATCTTAAGGATAATCCGTTTGACATGGACGATGATGTCGTCAAGGCA 831
|| ||||| || ||||| |||||||| || | ||||| ||||||||||||| ||||||||
Sbjct 571 GTAAAAGTTGACCATCTAAAGGATAAGCCATATGACAAGGACGATGATGTCATCAAGGCA 630
Query 832 ACAT-CTTTTGAAGTTATTTCAACTCTTAGGGATGTACTGAAGACAAGTTCACTATGGAG 890
|||| |||| ||||||| || || ||||||||||| | ||||||| |||||| |||||
Sbjct 631 ACATACTTTC-AAGTTATGTCGACACTTAGGGATGTTTTAAAGACAACTTCACTCTGGAG 689
Query 891 AGATCACGTTCAGACATATACCCAG-CAT 918
|||||| |||| ||||||||||||| |||
Sbjct 690 AGATCAAGTTCGGACATATACCCAGGCAT 718
> Ahg903431 jgi|Araly1|903431|Al_scaffold_0003_559
Length=2772
Score = 941 bits (509), Expect = 0.0
Identities = 839/995 (84%), Gaps = 36/995 (4%)
Strand=Plus/Plus
Query 1180 GAGACAGATGACAAATCTGCACTTTCTGCAAAGTTTAA-GGAAAGGATTGAGCCTAACAA 1238
|||||||| ||| |||| |||||||||||||| ||| || ||||||||| |||| |
Sbjct 991 GAGACAGACGACGGATCTTCACTTTCTGCAAAG-ATAAGGGTAAGGATTGATACTAA-TA 1048
Query 1239 G-GAAAAAATTCCAGCGCATGTATTACAAGTCATAGAAGAAGAGCTTACAAAGCTGCAGC 1297
| ||||| |||||| ||||||||| ||||||| ||||||||| ||||||||||| ||
Sbjct 1049 GAGAAAACATTCCAAAACATGTATTAAAAGTCATGGAAGAAGAGTTTACAAAGCTGGAGA 1108
Query 1298 TGTTAG-AGGCGAGTTCA-AGCGAGTTTAACGTGACGC-GTAACTACCTTGATTGGTTGA 1354
|||||| || | | || | ||||| || | |||| | ||||||||||||||||||||
Sbjct 1109 TGTTAGAAGAC-AATT-ATAGCGACTTCGATTTGAC-CTATAACTACCTTGATTGGTTGA 1165
Query 1355 CCATATTGCCTTGGGGAAATTACAGTAATGAAAACTTTGATGTTGC-ACGGGCGCAAACA 1413
|| | ||||||||||||||| |||| |||| || ||||||| | | |||||| ||| |
Sbjct 1166 CCGTGCTGCCTTGGGGAAATTTCAGTTATGAGAATTTTGATG-TCCTACGGGC-AAAAAA 1223
Query 1414 -ATTCTTGACGAGGATCACTATGGCTTATCTGACGTAAAGGAAAGAATACTGGAATTTAT 1472
||||||||||||||||| || || |||||||| ||||| ||||||||| | || |||||
Sbjct 1224 GATTCTTGACGAGGATCATTACGGATTATCTGATGTAAAAGAAAGAATATTAGAGTTTAT 1283
Query 1473 TGCAGTGGGAAGACTTAGAGGCACTTCACAAGGGAAAATCATCTGCCTCTCCGGCCCTCC 1532
||| |||||||||||||||||||||||||||||||||||||| || || || ||||| ||
Sbjct 1284 TGCTGTGGGAAGACTTAGAGGCACTTCACAAGGGAAAATCATTTGTCTATCTGGCCCACC 1343
Query 1533 TGGAGTAGGCAAAACTAGTATTGGGCGGTCTATTGCACGTGCTCTTAATCGCAAATTTTT 1592
||||||||| |||||||| |||||||| || ||||||||||||||| | ||||| || ||
Sbjct 1344 TGGAGTAGGTAAAACTAGCATTGGGCGTTCAATTGCACGTGCTCTTGACCGCAAGTTCTT 1403
Query 1593 CCGGTTCTCTGTTGGAGGGTTAGCAGATGTCG-CTGAGATCAAGGGGCATCGTCGGACAT 1651
||||||| |||||||||| || | ||||| | | ||||| ||||||||| ||| ||||
Sbjct 1404 CCGGTTCGCTGTTGGAGGACTATCTGATGTTGGC-GAGATTAAGGGGCATTGTCAAACAT 1462
Query 1652 ATGTTGGCGCCATGCCAGGAAAGATGGTGCAATGTCTAAAGAGTGTGGGGACAGCAAATC 1711
||||||| |||||||| |||||||||||||||||||||||||||||||| |||| |||||
Sbjct 1463 ATGTTGGTGCCATGCCTGGAAAGATGGTGCAATGTCTAAAGAGTGTGGGAACAGAAAATC 1522
Query 1712 CTCTTGTTCTAATCGATGAGATTGATAAGCTGGGGAGAG-GCCATGCTGGTGACCCGGCC 1770
||||| |||| |||||||||||||||||||| | || | |||| |||| ||||| |||
Sbjct 1523 CTCTTATTCTGATCGATGAGATTGATAAGCTTGATAG-GTGCCACACTGGCGACCCAGCC 1581
Query 1771 AGTGCTTTGTTGGAGCTTCTGGATCCAGAGCAAAACGCAAATTTTCTGGACCACTATCTC 1830
||||| ||||||||| || ||||||||||||| || ||||||||||| ||||||| ||||
Sbjct 1582 AGTGCGTTGTTGGAGGTTATGGATCCAGAGCAGAATGCAAATTTTCTAGACCACTTTCTC 1641
Query 1831 GACGTTACTATAGATCT-ATCAAAGGTTTTATTTGTGTGCACAGCAAATGTGATAGACAT 1889
| |||||||| || || |||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 1642 AATGTTACTATTGA-CTTATCAAAGGTTTTATTTGTATGCACTGCAAATGTGATAGAAAT 1700
Query 1890 GATTCCAAATCCTTTGCTAGACAGAATGGAGGTGATT--TCTATTGCTGGGTATATCACT 1947
|||||| |||| ||||||||||||||||||||||| ||| | |||||||| | |||
Sbjct 1701 GATTCCGGGTCCTCTGCTAGACAGAATGGAGGTGATTGATCTCT--CTGGGTATGTTACT 1758
Query 1948 GATGA-AAAAGTTCATATCGCAAGAGACTATTTGG--AAAAA-AC-TGCACGTGGAGATT 2002
||||| |||| | ||||| || ||||||||||||| ||||| || |||| | |||||
Sbjct 1759 GATGAGAAAA-TGCATATTGCTAGAGACTATTTGGTGAAAAAGACATGCA-G---AGATT 1813
Query 2003 GTGGTGTCAAGCCTGAACAGGTTGAGGTGAGTGATGCAGCGCTTCTTTCCTTGATAGAAA 2062
|||| | ||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 1814 GTGGCATTAAGCCTGAACAGGTTGATTTGAGTGATGCAGCTCTTCTTTCCTTGATAGAAA 1873
Query 2063 ATTACTGCAGAGAAGCAGGTGTTAGGAATCTCCAGAAA-CAGATCGAGAAGATTTACCGT 2121
||||||||||||||||||| ||||| |||||||| ||| ||||| |||||||||||||||
Sbjct 1874 ATTACTGCAGAGAAGCAGGAGTTAGAAATCTCCA-AAAGCAGATTGAGAAGATTTACCGT 1932
Query 2122 AAGATTGCACTTAAATTAGTGCGTGAAGGAGCAGT 2156
||| |||| ||| || |||| || ||||||||||
Sbjct 1933 AAGGTTGCTCTTGAACTAGTACGCCAAGGAGCAGT 1967
Score = 651 bits (352), Expect = 0.0
Identities = 531/619 (86%), Gaps = 6/619 (1%)
Strand=Plus/Plus
Query 2309 AAACGGTTATGATTGATGAGTCAAACCTTGCGGATTATGTAGGAAAACCGGTATTCCATG 2368
||| ||||||||||||||| ||||||||||| ||||||||||| ||||| |||||||| |
Sbjct 2132 AAAAGGTTATGATTGATGAATCAAACCTTGCAGATTATGTAGGCAAACCAGTATTCCAGG 2191
Query 2369 CAGAGAAGCTCTATGAGCAGACACCGGTAGGTGTTGTGATGGGTCTAGCTTGGACATCAA 2428
||||||| ||||||| |||||||| || || |||||||||||||||||||||||||| |
Sbjct 2192 AAGAGAAGATCTATGAACAGACACCTGTTGGGGTTGTGATGGGTCTAGCTTGGACATCCA 2251
Query 2429 TGGGTGGTTCAACATTGTACATAGAGACGA-CTGTTGTGGAGGAAGGGGAAGGTAAAGGT 2487
||||||| ||||| |||||||||||||| | || |||| || ||||| || || ||||||
Sbjct 2252 TGGGTGGCTCAACGTTGTACATAGAGACAACCT-TTGTAGAAGAAGGAGAGGGAAAAGGT 2310
Query 2488 GGCCTGAATATAACGGGTCAGCTCGGTGATGTGATGAAAGAAAGTGCACAAATTGCTCAC 2547
|| || |||||||||||||||| || ||||||||||||||||| ||| | || ||||||
Sbjct 2311 GGTCTTCATATAACGGGTCAGCTTGGGGATGTGATGAAAGAAAGCGCAGAGATCGCTCAC 2370
Query 2548 ACAGTCGCCAGAAAG-ATCATGCTAGAGAAAGAACCAGAGAATCAGTTCTTTGCAAACTC 2606
|||||||| || ||| || ||| | ||||||||||||||||| | || ||||| || ||
Sbjct 2371 ACAGTCGCTAG-AAGAATAATGTTTGAGAAAGAACCAGAGAACCTCTTTTTTGCGAATTC 2429
Query 2607 CAAGCTTCATCTCCATGTTCCTGCAGGAGCCACTCCCAAGGATGGTCCAAGTGCAGGCTG 2666
|||||||||| | |||||||||| ||||||||| || || || |||||||||||||||||
Sbjct 2430 CAAGCTTCATTTACATGTTCCTGAAGGAGCCACACCAAAAGACGGTCCAAGTGCAGGCTG 2489
Query 2667 CACCATGATCACATCTTTACTATCACTTGCCACGAAGAAACCCGTTAGGAAGGACCTTGC 2726
|||||||||||| || || ||||||||||||| |||||| | || |||||||| |||||
Sbjct 2490 CACCATGATCACTTCGTTCCTATCACTTGCCATGAAGAAGCTTGTAAGGAAGGATCTTGC 2549
Query 2727 AATGACTGGAGAAGTCACACTAACCGGAAGAATTCTTCCTATTGGTGGGGTGAAAGAGAA 2786
|||||| ||||||||||| ||||| || ||||||||||| |||||||| || || |||||
Sbjct 2550 AATGACCGGAGAAGTCACTCTAACTGGTAGAATTCTTCCAATTGGTGGCGTTAAGGAGAA 2609
Query 2787 AACTATAGCGGCGAGGCGGAGTCAGATTAAAACAATAATATTTCCAGAGGCAAACCGGAG 2846
|||||||| || | ||||||||||| |||||||||||||| || |||||||| |||||
Sbjct 2610 GACTATAGCTGCAAAACGGAGTCAGATCAAAACAATAATATTCCCGGAGGCAAATCGGAG 2669
Query 2847 AGACTTTGATGAGCTGGCAGAGAATGTGAAAGAAGGGCTTAATGTTCACTTCGTGGATGA 2906
||||||||| ||||| || || || |||||||||||||| |||||||||||||||||||
Sbjct 2670 AGACTTTGAGGAGCTTGCGGAAAACATGAAAGAAGGGCTTGATGTTCACTTCGTGGATGA 2729
Query 2907 CTATG-GAAAGATCTTCGA 2924
|||| ||| ||| |||||
Sbjct 2730 ATATGAGAA-GATATTCGA 2747
Score = 211 bits (114), Expect = 2e-53
Identities = 187/222 (84%), Gaps = 6/222 (3%)
Strand=Plus/Plus
Query 381 ATCTTCGTCTGCGATTGTGC-CCACTAACCCTAGGCCT-GAAGATTGTTTAACGGTTCTA 438
|||||| || ||||||| | | |||||||||| ||| || |||||| |||||||| ||
Sbjct 282 ATCTTCTTCACCGATTGT-CTCAACTAACCCTA-CCCTCGACGATTGTCTAACGGTTATA 339
Query 439 GCATTGCCGGTGCCACATAGGCCGCTTTTTCCTGGTTTTTACATGCCAATCTATGTCAAG 498
|||||||| |||| || | ||| ||| ||||||| ||||||||||||||||||||||||
Sbjct 340 GCATTGCCATTGCCTCACAAGCCTCTTATTCCTGGCTTTTACATGCCAATCTATGTCAAG 399
Query 499 GATCCTAAAGTACTCGCAGCCTTACAAGAGAGCAGAAGACGACAAGCTCCATATGCAGGA 558
||||||||||| || ||||| ||||||||||||| ||||| |||| ||||||||| ||
Sbjct 400 GATCCTAAAGTTCTTGCAGCTTTACAAGAGAGCACAAGACAACAATCTCCATATGTTGGG 459
Query 559 GCTTTCCTTCTGAAGGATGACCCATC-AGCTGATTCATCTTC 599
||||||||| ||||||||| | | || | |||||||||||||
Sbjct 460 GCTTTCCTTTTGAAGGATGGCGCTTCTA-CTGATTCATCTTC 500
> Ahg359743 jgi|Araly1|359743|fgenesh1_pg.C_scaffold_845000001
Length=864
Score = 211 bits (114), Expect = 2e-53
Identities = 187/222 (84%), Gaps = 6/222 (3%)
Strand=Plus/Plus
Query 381 ATCTTCGTCTGCGATTGTGC-CCACTAACCCTAGGCCT-GAAGATTGTTTAACGGTTCTA 438
|||||| || ||||||| | | |||||||||| ||| || |||||| |||||||| ||
Sbjct 282 ATCTTCTTCACCGATTGT-CTCAACTAACCCTA-CCCTCGACGATTGTCTAACGGTTATA 339
Query 439 GCATTGCCGGTGCCACATAGGCCGCTTTTTCCTGGTTTTTACATGCCAATCTATGTCAAG 498
|||||||| |||| || | ||| ||| ||||||| ||||||||||||||||||||||||
Sbjct 340 GCATTGCCATTGCCTCACAAGCCTCTTATTCCTGGCTTTTACATGCCAATCTATGTCAAG 399
Query 499 GATCCTAAAGTACTCGCAGCCTTACAAGAGAGCAGAAGACGACAAGCTCCATATGCAGGA 558
||||||||||| || ||||| ||||||||||||| ||||| |||| ||||||||| ||
Sbjct 400 GATCCTAAAGTTCTTGCAGCTTTACAAGAGAGCACAAGACAACAATCTCCATATGTTGGG 459
Query 559 GCTTTCCTTCTGAAGGATGACCCATC-AGCTGATTCATCTTC 599
||||||||| ||||||||| | | || | |||||||||||||
Sbjct 460 GCTTTCCTTTTGAAGGATGGCGCTTCTA-CTGATTCATCTTC 500
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 125589990900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5