BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G26880.1
Length=1411
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324780 jgi|Araly1|324780|fgenesh1_pm.C_scaffold_5002324 913 0.0
Ahg942291 jgi|Araly1|942291|scaffold_602835.1 486 2e-136
Ahg489614 jgi|Araly1|489614|fgenesh2_kg.6__2748__AT5G27944.1 486 2e-136
Ahg489617 jgi|Araly1|489617|fgenesh2_kg.6__2751__AT5G27070.1 470 2e-131
Ahg489532 jgi|Araly1|489532|fgenesh2_kg.6__2666__AT5G27945.1 106 5e-22
> Ahg324780 jgi|Araly1|324780|fgenesh1_pm.C_scaffold_5002324
Length=783
Score = 913 bits (494), Expect = 0.0
Identities = 606/657 (92%), Gaps = 20/657 (3%)
Strand=Plus/Plus
Query 54 GTCGGAGCGTCATAGCTTCAAGGACGTTTCATCTGCGGTCAAGTGGCCGTCTATTT-CCC 112
||| |||||||||||||||||||||||||| ||||| ||||||||||||||| ||| |||
Sbjct 23 GTCTGAGCGTCATAGCTTCAAGGACGTTTCGTCTGCCGTCAAGTGGCCGTCT-TTTACCC 81
Query 113 TCTCTTAGCTTAACTCATCTCAAGGGCAAGCTATCTCTCTCCATCAACTCGTTTTCCTCC 172
|| ||||||||||||||||||||| ||||||||||||||||||||| |||||| || ||
Sbjct 82 TCCCTTAGCTTAACTCATCTCAAGCGCAAGCTATCTCTCTCCATCACCTCGTTCTCTTCG 141
Query 173 AAGATTCAGTCTCATGCTCTCCGAGGAGTTGGTATAGGCGAGTCAGATAAGAAAAATCCC 232
|||||||| ||| | | || | | | | |||| ||||||||| ||||||
Sbjct 142 AAGATTCA--CTC-T-C-CT-C-------T-G--T--GCGATTCAGATAAGGGAAATCCT 183
Query 233 CTGCCGCGAGGGGCCGGAGAAGGAGTCAAGGAAGATGCGAGGAGTAAGCTGCTTCATGTA 292
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 184 CTGCCGCGAGGGGCGGGAGAAGGAGTCAAGGAAGATGCGAGGAGTAAGCTGCTTCAAGTA 243
Query 293 GTTTTGGTCTCTCCTCAGATTCCTGGGAATACAGGTTGCATTGCAAGAACATGTGCTGCC 352
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 244 GTTTTGGTCTCTCCCCAGATTCCTGGGAATACAGGTTGCATTGCAAGAACATGTGCGGCC 303
Query 353 TCAGCTGTTGGTCTGCATTTAGTCGGGCCATTAGGTTTTCAAGTGGATGACGCCAGAGTT 412
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 304 TCAGCTGTTGGGCTGCATTTAGTTGGGCCATTAGGTTTTCAAGTGGATGACGCCAGAGTA 363
Query 413 AAGCGAGCTGGTTTGGATTATTGGCCCTTTGTGGTTGTCAAAGCGCATAGCTCATGGGCT 472
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 364 AAGCGAGCTGGTTTGGATTATTGGCCCTTTGTGGTTGTCAGAGCGCATAGCTCATGGGCT 423
Query 473 GAGTTTCAAGAATATTTCAGGCTTCAGGAGGGAGAAAAACGAATGATAGCTTTTACAAAA 532
||||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 424 GAGTTTCGAGAATATTTCAGGCAACAGGAGGGAGAAAAACGGATGATAGCTTTCACAAAA 483
Query 533 AGAGGAACAAGGATACATTCAGATTTTTCTTACCGATCAGGCGATTACCTCTTGTTCGGG 592
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 484 AGAGGAACAAGGATACATTCAGATTTCTCTTACCGACCAGGCGATTACCTCTTGTTCGGG 543
Query 593 TCAGAGACAAGCGGTCTACCTCCTGAAGCGCTGTCAGACTGCAATCACGAACCATATGGA 652
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 544 TCAGAGACAAGCGGTCTACCTCCTGAAGCGCTGTCAGACTGCAAACACGAACCATATGGA 603
Query 653 GGGGGGACCCTACGTATTCCCATGGTAGAAACGTATGTGAGATGTCTGAATCTTTCG 709
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 604 GGGGGGACCCTACGTATTCCGATGGTAGAAACGTATGTCAGATGTCTGAATCTTTCG 660
> Ahg942291 jgi|Araly1|942291|scaffold_602835.1
Length=859
Score = 486 bits (263), Expect = 2e-136
Identities = 326/356 (92%), Gaps = 5/356 (1%)
Strand=Plus/Plus
Query 758 AACTTGTCTATGAGAGAAGATACAATGTTTAAGAAAGCCCTCGAGCTTTCAACTCTGTGC 817
|||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||
Sbjct 126 AACTTGTCTATGAGAGAAGAGACTATGTTTAAGAAAGCCTTCGAGCTTTCAACTCTGTGC 185
Query 818 GATATCGAAGTCTGTGTCATACT-TTATAGTCGTGACGGAGAACTCATCAAGACATGGCC 876
|| |||||||||||||||||| | |||| |||||||||||||||||||||||||||||||
Sbjct 186 GACATCGAAGTCTGTGTCATA-TATTATGGTCGTGACGGAGAACTCATCAAGACATGGCC 244
Query 877 GGAGGATCAATCCAAGGTTCGAGACATGGCAGAGAGGTTTAGCAAACTACACGAGAGAGA 936
|||||||||||||||||||||||||||||| ||||| |||| ||||||| |||| |||||
Sbjct 245 GGAGGATCAATCCAAGGTTCGAGACATGGCTGAGAGATTTACCAAACTAAACGACAGAGA 304
Query 937 GCGACGCAAGAAAAGAACCAACCTTTCTCTGTTTCTACGTAAGAAGATCCTCGACAACAG 996
| ||||||||||||| || |||||||||||||| ||| | ||||||||||||||| |||
Sbjct 305 GAGACGCAAGAAAAGCACAAACCTTTCTCTGTTGCTAAGGAAGAAGATCCTCGACGACAA 364
Query 997 TAAGCTCTCGGAGAAAGTCTTAGAGATGAAGGATTCATTAGAAAGTGGTCTACGGGTACT 1056
|||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||| |
Sbjct 365 TAAGCTCTTGGAGAAAGTGTTAGAGATGAAGGATTCGTTAGAAAGTGGTCTACGGGTATT 424
Query 1057 ACAAGATAAGCTTCTGTTACTACAACCCGAGAAAAACCAGACCGAGTTAGGTCAGA 1112
||||||||||||||||||||| ||||| ||||| ||||| ||||||||||||||
Sbjct 425 ACAAGATAAGCTTCTGTTACTCCAACCAGAGAA---CCAGATCGAGTTAGGTCAGA 477
Score = 207 bits (112), Expect = 1e-52
Identities = 147/163 (90%), Gaps = 6/163 (4%)
Strand=Plus/Plus
Query 1119 TCATCAACAATGGACAGAACCATTGGTGAATATCGGTGTGTCAAACACAGAGCAAGACCT 1178
|||||||||||||||| |||||||||| | || |||||| ||||| ||||| |||||||
Sbjct 527 TCATCAACAATGGACAAAACCATTGGT-CA-AT-GGTGTGCCAAACGCAGAGAAAGACCT 583
Query 1179 ATCGACGTCACCATTGAGTCAACATCAGAGCAAATTTTCAGTCTTTCTCTATAACCATGA 1238
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 ATCGACGTCATCATTGAATCAACATCAGAGCAAATTTTCAGTCTTTCTCTATAACCATGA 643
Query 1239 CAACTG-TAGCTTCTATCAAGTCCGTGCCTCTGTTTCTA-CTT 1279
||| || ||||||||||||||||| | ||||||||||| |||
Sbjct 644 CAA-TGGTAGCTTCTATCAAGTCCCAGACTCTGTTTCTAGCTT 685
> Ahg489614 jgi|Araly1|489614|fgenesh2_kg.6__2748__AT5G27944.1
Length=651
Score = 486 bits (263), Expect = 2e-136
Identities = 326/356 (92%), Gaps = 5/356 (1%)
Strand=Plus/Plus
Query 758 AACTTGTCTATGAGAGAAGATACAATGTTTAAGAAAGCCCTCGAGCTTTCAACTCTGTGC 817
|||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||
Sbjct 106 AACTTGTCTATGAGAGAAGAGACTATGTTTAAGAAAGCCTTCGAGCTTTCAACTCTGTGC 165
Query 818 GATATCGAAGTCTGTGTCATACT-TTATAGTCGTGACGGAGAACTCATCAAGACATGGCC 876
|| |||||||||||||||||| | |||| |||||||||||||||||||||||||||||||
Sbjct 166 GACATCGAAGTCTGTGTCATA-TATTATGGTCGTGACGGAGAACTCATCAAGACATGGCC 224
Query 877 GGAGGATCAATCCAAGGTTCGAGACATGGCAGAGAGGTTTAGCAAACTACACGAGAGAGA 936
|||||||||||||||||||||||||||||| ||||| |||| ||||||| |||| |||||
Sbjct 225 GGAGGATCAATCCAAGGTTCGAGACATGGCTGAGAGATTTACCAAACTAAACGACAGAGA 284
Query 937 GCGACGCAAGAAAAGAACCAACCTTTCTCTGTTTCTACGTAAGAAGATCCTCGACAACAG 996
| ||||||||||||| || |||||||||||||| ||| | ||||||||||||||| |||
Sbjct 285 GAGACGCAAGAAAAGCACAAACCTTTCTCTGTTGCTAAGGAAGAAGATCCTCGACGACAA 344
Query 997 TAAGCTCTCGGAGAAAGTCTTAGAGATGAAGGATTCATTAGAAAGTGGTCTACGGGTACT 1056
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 345 TAAGCTCTCGGAGAAAGTCTTAGAGATGAAGGATTCGTTAGAAAGTGGTCTACGGGTATT 404
Query 1057 ACAAGATAAGCTTCTGTTACTACAACCCGAGAAAAACCAGACCGAGTTAGGTCAGA 1112
||||||||||||| |||||| ||||||||||| ||| | ||||||||||||||
Sbjct 405 ACAAGATAAGCTTAAGTTACTCCAACCCGAGAA---CCAAATCGAGTTAGGTCAGA 457
Score = 167 bits (90), Expect = 2e-40
Identities = 100/105 (95%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 1157 TGTCAAACACAGAGCAAGACCTATCGACGTCACCATTGAGTCAACATCAGAGCAAATTTT 1216
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 539 TGTCAAACACAGAGCAAGAGCTATCGACGTCATCATTGAGTCAACATCAGAGCAAATTTT 598
Query 1217 CAGTCTTTCTCTATAACCATGACAACTGTAGCTTCTATCAAGTCC 1261
|||||||||||||||||||||||||| ||||||||| |||| |||
Sbjct 599 CAGTCTTTCTCTATAACCATGACAACGGTAGCTTCTGTCAACTCC 643
> Ahg489617 jgi|Araly1|489617|fgenesh2_kg.6__2751__AT5G27070.1
Length=834
Score = 470 bits (254), Expect = 2e-131
Identities = 322/354 (91%), Gaps = 7/354 (2%)
Strand=Plus/Plus
Query 761 TTGTCTATGAGAGAAGATACAATGTTTAAGAAAGCCCTCGAGCTTTCAACTCTGTGCGAT 820
||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 97 TTGTCTATGAGAGAAGACACAATGTTTAAGAAAGCCTTCGAGCTTTCAACTCTGTGCGAC 156
Query 821 ATCGAAGTCTGTGTCATACT-TTATAGTCGTGACGGAGAACTCATCAAGACATGGCCGGA 879
|| ||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||
Sbjct 157 ATTGAAGTCTGTGTCATA-TATTACGGTCGTGACGGAGAACTCATCAAGACATGGCCGGA 215
Query 880 GGATCAATCCAAGGTTCGAGACATGGCAGAGAGGTTTAGCAAACTACACGAGAGAGAGCG 939
||| |||| ||||||||||||||||| ||||| |||| ||||||| |||| |||||| |
Sbjct 216 AGATAAATCAAAGGTTCGAGACATGGCTGAGAGATTTACCAAACTAAACGATAGAGAGAG 275
Query 940 ACGCAAGAAAAGAACCAACCTTTCTCTGTTTCTACGTAAGAAGATCCTCGACAAC-AGTA 998
|||||||||||| || |||||||||||||| ||| | ||||||||||||||| || | ||
Sbjct 276 ACGCAAGAAAAGCACAAACCTTTCTCTGTTGCTAAGGAAGAAGATCCTCGACGACGA-TA 334
Query 999 AGCTCTCGGAGAAAGTCTTAGAGATGAAGGATTCATTAGAAAGTGGTCTACGGGTACTAC 1058
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 335 AGCTCTCGGAGAAAGTTTTAGAGATGAAGGATTCGTTAGAAAGTGGTCTACGGGTATTAC 394
Query 1059 AAGATAAGCTTCTGTTACTACAACCCGAGAAAAACCAGACCGAGTTAGGTCAGA 1112
||||||||||||||||||| |||||||| ||| ||||||||||||||||||||
Sbjct 395 AAGATAAGCTTCTGTTACTCCAACCCGA-AAA--CCAGACCGAGTTAGGTCAGA 445
Score = 207 bits (112), Expect = 1e-52
Identities = 147/163 (90%), Gaps = 6/163 (4%)
Strand=Plus/Plus
Query 1119 TCATCAACAATGGACAGAACCATTGGTGAATATCGGTGTGTCAAACACAGAGCAAGACCT 1178
||| ||||||||||||||| || ||||| | || ||||||||||||||||||||||||||
Sbjct 498 TCAACAACAATGGACAGAATCACTGGTG-A-AT-GGTGTGTCAAACACAGAGCAAGACCT 554
Query 1179 ATCGACGTCACCATTGAGTCAACATCAGAGCAAATTTTCAGTCTTTCTCTATAACCATGA 1238
||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 555 ATCGATGTCATCATTGAGTCAACATCAGAGCAAATTTTCAATCTTTCTCTATAACCATGA 614
Query 1239 CAACTG-TAGCTTCTATCAAGTCCGTGCCTCTGTTTCTA-CTT 1279
||| || |||||||| |||| ||| || ||||||||||| |||
Sbjct 615 CAA-TGGTAGCTTCTGTCAACTCCCTGACTCTGTTTCTAGCTT 656
> Ahg489532 jgi|Araly1|489532|fgenesh2_kg.6__2666__AT5G27945.1
Length=1290
Score = 106 bits (57), Expect = 5e-22
Identities = 69/74 (93%), Gaps = 3/74 (4%)
Strand=Plus/Minus
Query 1119 TCATCAACAATGGACAGAACCATTGGTGAATATCGGTGTGTCAAACACAGAGCAAGACCT 1178
|||||||||||||||||||||||||||| | || ||||||||||||||||||||||| ||
Sbjct 71 TCATCAACAATGGACAGAACCATTGGTG-A-AT-GGTGTGTCAAACACAGAGCAAGAGCT 15
Query 1179 ATCGACGTCACCAT 1192
|||||||||| |||
Sbjct 14 ATCGACGTCATCAT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52754989325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5