BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G26910.1
Length=3404
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489520 jgi|Araly1|489520|fgenesh2_kg.6__2654__AT5G26910.1 4867 0.0
Ahg477867 jgi|Araly1|477867|fgenesh2_kg.3__568__AT3G05750.1 863 0.0
Ahg324343 jgi|Araly1|324343|fgenesh1_pm.C_scaffold_5001887 357 3e-97
> Ahg489520 jgi|Araly1|489520|fgenesh2_kg.6__2654__AT5G26910.1
Length=3332
Score = 4867 bits (2635), Expect = 0.0
Identities = 3136/3368 (93%), Gaps = 73/3368 (2%)
Strand=Plus/Plus
Query 1 GGAGTGAGAAACTGGGAAAATTCAAAACActc---tgtttctctctct-c-ctctcactc 55
||||||||| |||||||||||||||||||||| ||||||||||||| | |||||||||
Sbjct 1 GGAGTGAGAGACTGGGAAAATTCAAAACACTCTGTTGTTTCTCTCTCTCCTCTCTCACTC 60
Query 56 ttcg-ttctcttctctcGTCACATCAATCCACACTGTGAAGTATCTGttttttt-tt-tt 112
|||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 61 TTCGCCTCTCTTCTCTCGTCACATCAATCCACACTGTGAAGTATCTGTTTTTTTCTTCTT 120
Query 113 ttttagtttttCAAGTTCTCTGCTGCTACTATTGGTCTGTCT-TCTCTACCTAAATCCCA 171
||||| ||| |||||||||||||||| |||||||||| ||| ||| | ||| | ||||
Sbjct 121 TTTTAATTTCTCAAGTTCTCTGCTGCAACTATTGGTC--TCTGTCT-TCCCT--A-CCCA 174
Query 172 AATCCCAAATC-CCAAATCTAGTATCATCTAACCTTACTTCGTCCTCTTTTGATTTAACC 230
||||||||||| |||| | || |||||||||||||||||||| |||||||||||
Sbjct 175 AATCCCAAATCTTTAAAT-T-CTA--ATCTAACCTTACTTCGTCCTGGATTGATTTAACC 230
Query 231 TCTTTCTCTGATCTGACCCATTTCTCAAGAATCTCTCTTTCTTCTTA-ATTCATTGGTGT 289
| |||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||
Sbjct 231 T-TTTCTCTGATCTGACCCATTTCTCAAGACTCTCTCTTTCTTCTAAGATTCATTGGTGT 289
Query 290 TTTAACCTTTTCATCGATTCCAATTCTCAATTGTTGTCTGTTTGAGGAACACAAGAcccc 349
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 290 TTTAACCTTTTCATCGATTCCAATTCTCAATTGTTGTCTGTTTGAGGAACACAAGA--CC 347
Query 350 cccTTCCCCTAGTGTTGCTCGCTTCTAGGGCTAGATCTTCTGGGAACGCGAAAGTTTAGG 409
||| |||||| |||||| ||||||||||||||||||||||| | ||||| ||||||||||
Sbjct 348 CCC-TCCCCTTGTGTTGGTCGCTTCTAGGGCTAGATCTTCTCGTAACGCTAAAGTTTAGG 406
Query 410 TCTTTAATCGA-TTTTGTGCGTAAACAGTCCGCAGCATTTCTGGGTTTTTGTTCCCGTTG 468
| ||||||| | ||||||| || || |||| |||||||||||||||||| |||||||| |
Sbjct 407 TTTTTAATCAATTTTTGTGTGTGAATAGTCTGCAGCATTTCTGGGTTTTGGTTCCCGTGG 466
Query 469 CTACATTTTGTTGGT-AACGTGTCGAATTCGAGAATTTGATTGGTTTCTTCACAAGGGTC 527
|| ||||||| | || |||||||||||||| | | |||| ||||| ||||||||||
Sbjct 467 CTGCATTTTGCT-GTAAACGTGTCGAATTC--G-A-TTGA----TTTCTCCACAAGGGTC 517
Query 528 TCTGGAGTTAACCCAAAATTGGAATGAGCTCATAAGTTAAAGTTGAGGTCTTTGTAACCT 587
|||||| ||||||| |||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 518 TCTGGAATTAACCC-AAATTGGAGTGAGCTCATAAGTTAAAGTTGAGATCTTTGTAACCG 576
Query 588 TTAGATGAACTAAAAATGGAGGTTGTTGAGAGGAAACGATCCAGAGGAGGGTTTTTAAAT 647
||| | || | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 577 ATAGGTAAAATTAAAATGGAGGTTGTTGAGAGGAAACGATCCAGAGGAGGGTTTTTAAAT 636
Query 648 TTATTTGATTGGCATGGAAAATCCCGCAAGAAGCTCTTCTCCGGCAGCACCTCAG-AACT 706
||||||||||||||||||||| |||| |||||||||||||||||||||| ||| | ||||
Sbjct 637 TTATTTGATTGGCATGGAAAACCCCGGAAGAAGCTCTTCTCCGGCAGCAGCTC-GCAACT 695
Query 707 CTCAG-----AAG-A-ATCAAAGCAGCCTGCACAAAACCTCTTGAAGTCGAGGGTTTCTC 759
||||| ||| | | |||| ||| |||| ||||||||||||||| ||||||||||||
Sbjct 696 CTCAGAATCAAAGCAGA-CAAAACAGACTGCTCAAAACCTCTTGAAGGCGAGGGTTTCTC 754
Query 760 TTATTGAGGTTGATGAGATTGGAAAGAGTTCAAGTAACAACCAGAGAAGTGACTCGAGCT 819
||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||
Sbjct 755 TTATTGAGGTTGATGAGATTGGAAAAAGTTCAAGTTACAACCCGAGAAGTGACTCGAGCT 814
Query 820 GTTGTGCATCTTCAGTAACCAGTGATGATGGACAGGGGACAAGAGCCCCGAGTGTGGTTG 879
||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 815 GTTGTGCATCTTCTGTTACCAGTGATGATGGACAGGGAACAAGAGCCCCGAGTGTGGTTG 874
Query 880 CGAGGCTTATGGGTTTAGAGTCTCTACCGGTACCAAATGTCCAGGAACCTCGACTTAATC 939
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 875 CGAGGCTTATGGGTTTAGAGTCTCTACCGGTACCAAATTTCCAGGAACCTCGACTTAATC 934
Query 940 CCGATCTTGATCCGTTCTTAC-TCAGACCTTCACAAAACACTAACAGATGGGATGCATAT 998
||||||||||||||||||| | | |||||||||| ||||||||| |||||||||||||||
Sbjct 935 CCGATCTTGATCCGTTCTT-CGTTAGACCTTCACGAAACACTAATAGATGGGATGCATAT 993
Query 999 GAGAATCTTGGTTATGTAAATCTCCGTAGTGACTATGATGGTATTTCTTGGGACCATTTG 1058
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 994 GAGAATCTTGGTTATGTAAATCTCCGTAGTGACTATAATGGTATTTCCTGGGACCATTTG 1053
Query 1059 GATTCTAGAACGAATAATGGGCGCAACCAACCGATTGAACGGTTTCAGTCTGAGACTTTT 1118
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1054 GATTCAAGAACGAATAATGGGCGCAACCAACCGATTGAACGGTTTCAATCTGAGACTTTT 1113
Query 1119 CCTCCCAGGTCAGCTAAACCGATATGTGTTACCAACAATAGACACCTGTCTCCTATCCGG 1178
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1114 CCTCCCAGGTCAGCTACACCGATATGTGTTACCAACAATAGACACCTGTCTCCTATCCGT 1173
Query 1179 AGTCCTGGGTTTGTCCCATCCAGGAACCCTATTTATGTTATGGAAGCGGCTTCAAGAATG 1238
|||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1174 AGTCCTGGATTTGTCCCGTCCAGGAACCCTATTTATGTAATGGAAGCGGCTTCAAGAATG 1233
Query 1239 ATTGAACCAAGTCCTAGGATGGTTGCTAGAACACGGTTTTCGCCATCGAATTCTCCTTCA 1298
||||||||||| ||||||||||||||||||||||||||||| ||||| |||||| |||||
Sbjct 1234 ATTGAACCAAGACCTAGGATGGTTGCTAGAACACGGTTTTCACCATCTAATTCTTCTTCA 1293
Query 1299 TCAGTTCCTATGAGGATTCAAGATTTAAGAGAGAAATTAGAAGCTGCACAGAAAGTGTCT 1358
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1294 TCAGTTCCTATGAGGATTCAAGATTTAAGAGAGAAATTAGAAGCTGCACAGAAAGAGTCT 1353
Query 1359 AGCCGTCAAAACTCCAATGATACCTTCAACCTTAAGTACCCAAGTGGAAAGCACAACGAG 1418
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1354 AGCCGTCAAATCTCTAATGATACCTTCAACCTTAAGTACCCAAGTGGAAAGCACAACGAG 1413
Query 1419 AAGAGAATTACAACATCACTCACGACACCGTCAACTAGTAAGTTCATGGGGAAAAGCAGT 1478
||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 1414 AAGAGAACCGCAACATCACTCATGACACCGTCAACTAGTAAGTTCATGGGAAAAAGCAGT 1473
Query 1479 ACTGATGGTTTGAAGGGTAAAGTGAAGCCATCTTATGTATCCGCACAAGCAAAGGCCGGT 1538
|||||||||||||||||||||||||||||||||||||||| ||||||| ||| || ||
Sbjct 1474 TCTGATGGTTTGAAGGGTAAAGTGAAGCCATCTTATGTATCAACACAAGCGAAGACCAGT 1533
Query 1539 ACAACGCCCTTAAGTGTCACCAGAAACTCTGCAAACCAAAAGGAGAAGGCAGACGCTAAA 1598
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1534 ACAACGCCCTTAAGTGTCACCAGAAACTCTGCAAACCAAAAGGAGAAGGCAGAAGCTAAA 1593
Query 1599 AAGTGCGTAGTCAAAAGCCAGAATGCTCTCAGAGGAGCTCCCATTAGCATGGGAAAGAAT 1658
|| ||||||| |||||||||||||| |||||||||||||||||||| | ||||||||
Sbjct 1594 AAATGCGTAGCCAAAAGCCAGAATGGTCTCAGAGGAGCTCCCATTAACTTGGGAAAG--- 1650
Query 1659 ATGTTTAAGCAGAATAACCAGAAACAGAACTGCAGAGACAACCAACCTTCGATGACCTCT 1718
| | ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1651 A-G--TAAGCAGAATAACCACAAACAGAACTGCAGAGACAACCAACCTTCAATGACCTCT 1707
Query 1719 GTTTTGAACCAAAAAAGCAGCAAAGTAAATAACAAAGTTGTAAACAAGGTTCCAGTGGAA 1778
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1708 GTTTTAAACCAAAAAGGCAGCAAAGTAAATAACAAAGTTGTAAACAAGGTTCCAGTGGAA 1767
Query 1779 AGTGGATCGATATCAAAGCAGTTGGGTTTATCAACGGCCTCGGCGGAAAAGAATACTTCT 1838
|||||||||||||||||||||| |||||| ||||||| ||| |||||||||||||||||
Sbjct 1768 AGTGGATCGATATCAAAGCAGTCAGGTTTAACAACGGCTTCGACGGAAAAGAATACTTCT 1827
Query 1839 TTATCTTTGTCACGCAAAAAGACTCTTCCCCGGAGCAAAAAGCTCCCAAATGGGATGCAA 1898
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1828 TTATCTTTGTCACGCAAAAAGACTCTTCCCCGGAGCAAAAGGCTCCCAAATGGGATGCAA 1887
Query 1899 AAATCTGGAATCTCTGATGATAAACGGACCAAAAGGAGCGAAAATATGATCAAATGTAAC 1958
|||||||||||||| |||||||||||||||||||| || || ||| |||| |||||||||
Sbjct 1888 AAATCTGGAATCTCCGATGATAAACGGACCAAAAGAAGTGAGAATTTGATTAAATGTAAC 1947
Query 1959 ATCACCATTGATGGTGGCTTGAACAAAGGTAAAGATGATCGGAAAAAGGAAATGGATGTG 2018
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1948 ATCACCATTGATGGTGGCTTGAACAAAGGCAAAGATGATCGGAAAAAGGAAATGGATGTG 2007
Query 2019 ATTTCATTCACATTCTCATCTCCCATCAAAGGTTTATCTTCTGATTCATTATCCTCTACT 2078
|||||||||||||||||||| ||||||||||||||||| |||||||| ||||||| ||
Sbjct 2008 ATTTCATTCACATTCTCATCCCCCATCAAAGGTTTATCATCTGATTCCCTATCCTCCACA 2067
Query 2079 CAAGGAATTGGTCAAGACACAGACTCTGCAGTTAGTTTCA--AT-ATTGGCGGCGATTCC 2135
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 2068 CAAGGAATTGGTCAAGACACAGACTCTGCAGTTAGTTTCAGTATGATTGGCGGCGATTCC 2127
Query 2136 TTAAATGCTCTGTTGGAGCAAAAGCTCAGAGAGCTGACTTCTAAGCTTGAGTCTTCTAGC 2195
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2128 TTAAATGTTCTGTTGGAGCAAAAGCTCAGAGAGCTGACTTCTAAGCTTGAGTCTTCTAGC 2187
Query 2196 TGTAGCCTGACCCAAGAAGAGCCTTCATATTCCATTCCAATGGATGAGATGAACGGGATG 2255
||||||||||||||||||||| |||||| ||||||||||| ||||||| |||||||||||
Sbjct 2188 TGTAGCCTGACCCAAGAAGAGTCTTCATGTTCCATTCCAAAGGATGAGGTGAACGGGATG 2247
Query 2256 ATTTCATTTTCATCAGAATATGAAAAGTCAACCCAAAACGGTCTGCG-TAAAGTTTTATC 2314
||||||||||||||||| ||||||||||| |||||||||||||| | ||||||||||||
Sbjct 2248 ATTTCATTTTCATCAGAGTATGAAAAGTCGACCCAAAACGGTCT-AGATAAAGTTTTATC 2306
Query 2315 AGAGAGTGAATCTGTTTCTGACTGCACCTCATTCTATGACAAACAAAAATTCCAGATACA 2374
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2307 GGAGAGTGAATCTGTTTCTGACTGCACCTCATTCTATGACAAACAAAAATTTCAGATACA 2366
Query 2375 AGCAGAAGAGCACGAAGTTAGCAGCATTAGCACTGTGACGGAAGCAGATGATCTAAGAAG 2434
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 2367 AGCAGAAGAGCACGAAGTTAGCAGCATTAGCACTGTGACAGAAGCAGATGATCTCAGAAG 2426
Query 2435 CTCTTGCAGCAAGGGTTTCTCAGATTGCAGACAGACCGCAGAATATGGGACAATACAGTC 2494
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2427 CTCCTGCAGCAAGGGTTTCTCAGATTGCAGACAGACCACAGAATATGGGACAATACAGTC 2486
Query 2495 CTCATCAGATCAAGAACTCACCTGGGTTTCATTAAATGAGTCGCACCAAGCACAAGACGA 2554
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2487 CTCATCAGATCAAAAACTCACCTGGGTTTCATTAAATGAGTCGCACCAAGCACAAGACGA 2546
Query 2555 GTCCGAGCTCTCAGAATCTGTGGTAACACTGAGTTACTCAGAAGCCGAAGAAAGGCTCGA 2614
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 2547 GTCCGAGCTCTCAGAATCTGTAATAACACTGAGTTACTCAGAAGCCGAAGAAAGGCTTGA 2606
Query 2615 CTGGGAG-TTCGAGTACATATCCGAGATCCTCGGGTCTGACCAACTGATGGTGAAAGAAT 2673
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2607 CTGGGAGCTT-GAGTACATATCCGAGATCCTCGGGTCTGACCAACTGATGGTGAAAGAAT 2665
Query 2674 ATGCTTTGGGGATGGCCACTGACGTATTACCTGCGAGCCTCTTTGATGAAATGGAAGGCC 2733
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2666 TTGCTCTGGGGATGGCCACTGACGTATTACCTGCGAGCCTCTTTGATGAAATGGAAGGCC 2725
Query 2734 GAGGAGAAGTAACAGCAGCCAAAATCAAGAGAAAGACACTGTTTGATTTTGTGAATAAGT 2793
||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 2726 GAGGAGAAGCAACAGCAGCCAAAATCAAGAGAAAGACACTGTTTGATTTTGTCAATAATT 2785
Query 2794 GCTTAGCGCTCAGATGCGAGCA-GATGTTTATGGGTAGCTGCAGAGGGCTATTGGGGAAA 2852
|||||||||||| ||||||| | ||||||||||||||||||||||||||||||||| |||
Sbjct 2786 GCTTAGCGCTCAAATGCGAG-AGGATGTTTATGGGTAGCTGCAGAGGGCTATTGGGCAAA 2844
Query 2853 GGCGGGTTTTTGTTTGAGCAAAGAGATTGGTTAGCAGAAGAACTGAACAGAGAGATTCAT 2912
|||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2845 GGCGAGCTTTTGTTTGAACAAAGAGATTGGTTAGCAGAAGAACTGAACAGAGAGATTCAT 2904
Query 2913 GGGTTGAAGAAGATGAGAGAGATGATGATGGACGAGCTTGTTGACAAAGAGATGAGCAGT 2972
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 2905 GGGTTGAAGAAGATGAGAGAGATGATGATGGATGAGCTTGTTGACAAAGAAATGAGCAGT 2964
Query 2973 TTCGAAGGGAGATGGCTTGATTTCGAGAGAGAGACGTATGAAGAAGGCATTGACATTGAG 3032
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2965 TTCGAAGGGAGGTGGCTTGATTTCGAGAGAGAGACATATGAAGAAGGCATTGACATTGAG 3024
Query 3033 GGAGAGATAGTCTCTACGTTGGTAGATGATTTAGTTAATGATCTTGTCTCAGGTACTCAA 3092
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 3025 GGAGAGATAGTCTCTACATTGGTTGATGATTTAGTTAATGATCTTGTCTCAGGTACTCAA 3084
Query 3093 AGAAGAACATTGAGGCAAAGGGAAGGGGTAGTTT-------CTGCTTTAGTTGAGCCTCA 3145
||||||||||||||||||||||||||| |||||| || |||||||||||||| |
Sbjct 3085 AGAAGAACATTGAGGCAAAGGGAAGGGCTAGTTTGAATTTTCTACTTTAGTTGAGCCTGA 3144
Query 3146 TCTTCTCTCGGCATTCTAGATGCTTCTTCTAATAGTTTCTCTGACATGAGAATTGAGATA 3205
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 3145 TCTTCTCTCGGCATTCTAGAAGCTTCTTCTAACAGTTTCTCTGACATGAGAATTGAGATG 3204
Query 3206 AAGTGAAAGTAGCCAACATCGAGGAGAATTTT-CTCACAATGTAATTCACGAGAATTCCT 3264
|||| ||||||||||| ||||||||| ||||| |||||||||||||||||||| ||||||
Sbjct 3205 AAGTTAAAGTAGCCAATATCGAGGAGCATTTTTCTCACAATGTAATTCACGAGCATTCCT 3264
Query 3265 TATTTTATG-TTTCTACTTCTATTGAAAATGCAAATAATATGATCATTTTCTTTCATTCG 3323
| ||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 3265 TCTTTTATGGTTTCTACTTCCATTGAAAATGCAAATAATATGATCATTTTCCTTCATTCG 3324
Query 3324 TTCTGATG 3331
||||||||
Sbjct 3325 TTCTGATG 3332
> Ahg477867 jgi|Araly1|477867|fgenesh2_kg.3__568__AT3G05750.1
Length=2842
Score = 863 bits (467), Expect = 0.0
Identities = 1331/1731 (77%), Gaps = 127/1731 (7%)
Strand=Plus/Plus
Query 601 AAATGGAGGTTGTTGAGAGGAAACGATCCAGAGGAGGGTTTT-TAAATTTATTTGATTGG 659
||||||||||||||||||||||||||||||||||| |||||| ||||| | |||||||||
Sbjct 327 AAATGGAGGTTGTTGAGAGGAAACGATCCAGAGGA-GGTTTTCTAAATATGTTTGATTGG 385
Query 660 CATGGAAAATCCCGCAAGAAGCTCTTCT-C-C-GGCAGCACCTCAG-AACTCTCAGAAGA 715
| ||| |||||||| |||||| |||||| | | ||||| ||| | ||||||| ||||
Sbjct 386 CCTGGTAAATCCCGGAAGAAGTTCTTCTCCTCTAACAGCAGCTC-GAAACTCTCCGAAGC 444
Query 716 ATCAAAGC-AG-----C---CTGCACAAAACCTCTTGAAGTCGA-GGGTTTCTCTTATTG 765
|||||||| || | ||| ||||||| || ||||| | || |||| ||||
Sbjct 445 ATCAAAGCAAGAAAAACAAAATGCTCAAAACCCCTCAAAGTC-ATGGCCCTCTCCGATTG 503
Query 766 AG-GTTGATGAGATTGGAAAGAGTTCAAGTAACAA-CCAGAGAAGTGACTCGAGCTGTTG 823
|| | |||||||||| ||||| ||||| | |||| || ||||||||||||||| ||||
Sbjct 504 AGAG-GGATGAGATTGAAAAGAATTCAACTTACAATCC-GAGAAGTGACTCGAGTTGTTC 561
Query 824 TGCATCTTCAGTAACCAGTGATGATGGAC-AGGGGACAAGAGCCCCGAGTGTGGTTGCGA 882
|||| | | || ||||||||||||| |||| ||| ||| ||||||||| ||||||
Sbjct 562 AACATCCACTGCCACTAGTGATGATGGACAAGGGTCCAA-AGCTCCGAGTGTGATTGCGA 620
Query 883 GGCTTATGGGTTTAGAGTCTCTACCGGTACCAAATGTCC-AGGAACCTC-GACTTAATCC 940
|||| |||||||||||||||||||| |||||||||| || ||| || | | | ||||||
Sbjct 621 GGCTCATGGGTTTAGAGTCTCTACCTGTACCAAATG-CCTTGGAGCCCCGGTC-TAATCC 678
Query 941 CGATCTTGATCCGTTCTTACTCAGA-CCTTCACAAAACACTAA-CAGATGGGATGCATAT 998
||| ||||||| | ||| |||||| || |||| || || || || |||||||||||||
Sbjct 679 TGATTTTGATCCATACTTCCTCAGATCC-TCACGCAAGAC-AAGCACATGGGATGCATAT 736
Query 999 GAGAATCTT-GGTTATGTAAATCTCCGTAGTGACTATGATGGTATTTCTTGGGACCATTT 1057
|||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 737 GAGAAT-TTGGGTTATGTAAATCTCCGCAGTGACTATGATGGTATTTCTTGGGACCATTT 795
Query 1058 GGATTCTAGAACGAATAATGGGCGCAACCAACCGATTGAACGGTTTCAGTCTGAGACTTT 1117
|||||| |||| |||||| | | | |||| || || || || ||||| | || || ||
Sbjct 796 GGATTCAAGAATGAATAAAGAGTGTAACCGGCCTATCGACCGCTTTCAAACCGAAACGTT 855
Query 1118 TCCTCCCAGGTCAGCTAAACCGATATGTGTTAC-CAACAATAGACACCTGTCTCCTATCC 1176
||||| ||||| |||||||| || ||| || || |||||| | | ||||||||||||
Sbjct 856 ACCTCCAAGGTCGGCTAAACCAATCCCTGTCACTCA-CAATAGGCTCTTGTCTCCTATCC 914
Query 1177 GGAGTCCTGGGTTTGTCCCA-TCCAGGAACCCTATTTATGTTATGGAAGCGGCTTCAAGA 1235
| |||||||| ||||| | | |||||||||||| || ||| |||||||| ||||| |||
Sbjct 915 GAAGTCCTGGATTTGTTC-AGTCCAGGAACCCTGCTTCTGTAATGGAAGCAGCTTCGAGA 973
Query 1236 ATGATTGAACCAAGTCCTAGGATGGTTGCTAGAACACGGTTTTCGCCATC-GAATTC-TC 1293
|||||||||||||||||| |||| ||||||| |||||||||||| |||| || ||| ||
Sbjct 974 ATGATTGAACCAAGTCCTCGGATAGTTGCTAAAACACGGTTTTCATCATCTGA-TTCCTC 1032
Query 1294 CTTCATCAGTTCCTATGAGGATTCA-AGATTT-AAGAGAGAAATTAGAAGCTGCACAGAA 1351
||||||| |||| |||||||| || |||||| || ||||||| |||||||| |||||||
Sbjct 1033 -TTCATCACTTCCAATGAGGAT-CAGAGATTTGAA-AGAGAAACTAGAAGCTTCACAGAA 1089
Query 1352 AGTGTCTA-G-CCGTCAAAACTCCAATGATACCTTCAACCTTAAGTACC-CAAGTGGAAA 1408
|| | | | | || |||| ||| |||| ||||| |||| ||||| | || | |||||
Sbjct 1090 AG-GACAAAGTCC-TCAAGTCTCTAATGGTACCTGCAACAATAAGTGCTTCA-GAGGAAA 1146
Query 1409 GCACA-ACGAGAAGAGAATTACAACATCACTCACGACACC-GTCA-ACTAGTAAGTTCAT 1465
||| | | || ||||||| |||| |||||||| ||||| | | | | |||||| ||
Sbjct 1147 GCA-AGATGAAAAGAGAACTACATTATCACTCAAGACACAAGAGATAA-A-TAAGTT-AT 1202
Query 1466 GGGGA-AAAGCAG-TACTGATGGTTTGAAGGGTAAAGTGAAGCCATCTTATGTATCCGCA 1523
|||| ||||||| | || ||||| |||||||||||||||||| | | |||||| |||
Sbjct 1203 TGGGAGAAAGCAGGTT-TGGTGGTTCGAAGGGTAAAGTGAAGCCGCCCTCTGTATCTGCA 1261
Query 1524 CAAGCAAAGGCCGGTAC-A---AC--GCC---C--TTAAGTG-TCACCAGAAACT-CTGC 1570
|| ||||||||| ||| | || || | || |||| || | || | | |
Sbjct 1262 CATGCAAAGGCCAATACTATTCACAAGCGGGACAGTTCAGTGCTCTCAAGTGGCAACAG- 1320
Query 1571 AAACCAAAAGGAGAAGGCAGACGCTAAAAAGTGCGTAGTCAAAAGCCAGAATGCTCTCAG 1630
| |||||||| |||||| || |||| || || |||| || | | |||| |||||
Sbjct 1321 AGACCAAAAGAAGAAGGTGGAAACTAAGAACCGCATAGT-AA--G--A-AATGGTCTCAA 1374
Query 1631 AGGAGCTCCCATTAGCA-TGGGAAAGAATATGTTTAAGC-AGAATAACCAGAAACAGAAC 1688
|| | || | ||||| | ||||| | || ||||| | ||||||||||||||||||
Sbjct 1375 AGAATCTTCTGCTAGCACTAGGAAA-ACCGTGGATAAGCCA-AATAACCAGAAACAGAAC 1432
Query 1689 TGCAGAGACAACCAACCTTCGATGACCTCTGTTTTGAACCAAAAAAGCAGCAAAGTAAAT 1748
|| | | | || || ||||||| || || | | |||||||||| | |
Sbjct 1433 --CA-ATTTG-C-----T--GAA-ACATCTGTTTCAAATCAGAGAGGCAGCAAAGTGA-T 1479
Query 1749 -AACAAAGTTGTAAACAAGGTTCCAGTGGAAAGTGGATCGATATCAAAGCAGT-TGGGTT 1806
|| ||||| |||||||||| |||||||| ||| | | | | ||| || ||| ||
Sbjct 1480 GAAGAAAGT---AAACAAGGTTTTGGTGGAAAGCGGAACTACAACTAAGAAGCCTGGTTT 1536
Query 1807 TATCAACGGCCTCGGCGGAAAAGAATACTTCTTTATCTTTGTCACGCAAAAAGACTCTTC 1866
|| || | | || |||||||||| ||| ||| ||| ||||| |||||||||| |||||
Sbjct 1537 TA-CAGCAACATCAGCGGAAAAGAGCACTGCTTCATCCTTGTCCCGCAAAAAGAATCTTC 1595
Query 1867 CCCGGAGCAAAAAGCTCC-CAAATGGGATGCAAAAATCTGGAATCT-CTGATGATAAACG 1924
|||| | |||||| || |||||||| ||||| || ||||| || | | |||||||||
Sbjct 1596 CCCGCAACAAAAAA-TCGGCAAATGGGGTGCAAGAAGCTGGAGTCAACAG-TGATAAACG 1653
Query 1925 GACCAAAA-GGAGCGAAAA-TATGATCAAATGTAACATCACCATTGATGGTGGCTTGAAC 1982
|| |||| || | || || | |||| ||||||||||||||| ||||||| || |||||
Sbjct 1654 GATGAAAAAGG-GTGAGAAGT-TGATAAAATGTAACATCACCGTTGATGGCGGGTTGAAG 1711
Query 1983 AAAGGTAAAGATGATCGGAAA-AAGGAAATGGATGTGATTTCATTCACATTCTCATCTCC 2041
||| | |||||||| ||| ||||| |||||||||||||| ||||| |||||||||||
Sbjct 1712 TCAGGGGACGATGATCG-AAAGAAGGACATGGATGTGATTTCGTTCACTTTCTCATCTCC 1770
Query 2042 CATCAAAGGTTTATCTTCTGATTCATTATCCTCTACTCAAGGA-ATTGGTCAAGACACAG 2100
|||||||||||||| || |||| |||||| | |||| | | || |||||| ||||
Sbjct 1771 GATCAAAGGTTTATCATCCAATTCGCGATCCTCCA-TCAAAAAGACTGATCAAGATACAG 1829
Query 2101 ACTCTGCAGTTAGTTTCAATAT--TGG-CGGCGATTC-CTTAAATGCTCTGTTGGAGCAA 2156
| || ||| |||||||||||| | | | | ||||| || |||| |||||||||| ||
Sbjct 1830 AATCAGCACTTAGTTTCAATAAGATAGACAGTGATTCTCT-AAATTTTCTGTTGGAGAAA 1888
Query 2157 AAGCTCAGAGAGCTGACTTCTAAGCTTGAGTCTTCTAGCTGTAGCCTGACCCAAGAAGA- 2215
|||||||||||||| ||||||||| ||||||| ||| || |||| ||||||||||||||
Sbjct 1889 AAGCTCAGAGAGCTAACTTCTAAGATTGAGTCATCTTGCAGTAGTCTGACCCAAGAAGAA 1948
Query 2216 GC--CTTCATATTCCATTCCAATGGAT-GAGATGAACGGGATGATTTCATT 2263
| |||| ||||||| ||| |||| | | |||| |||| ||| |||||
Sbjct 1949 GAGTCTTCGGGTTCCATTACAAAGGATTGGG-TGAATGGGACGATATCATT 1998
> Ahg324343 jgi|Araly1|324343|fgenesh1_pm.C_scaffold_5001887
Length=2457
Score = 357 bits (193), Expect = 3e-97
Identities = 630/831 (76%), Gaps = 69/831 (8%)
Strand=Plus/Plus
Query 1742 AGTAAAT-AACAAAGTTGTAAACAAGGTTCCAGTGGAAAGTGGATCGATATCAAAGCAG- 1799
||| ||| |||||||| ||||| ||| || |||||||||||||| |||||||| ||
Sbjct 1116 AGT-AATAAACAAAGTAGTAAATAAGAATCTTGTGGAAAGTGGATCTATATCAAA-AAGC 1173
Query 1800 TTGGG-TTTATCAACGGCCTCGGCGGAAAAGAAT-ACTTCTTTATCTTTGTCACGCAAAA 1857
||| |||| | | | | || || ||||| | | ||||||||| |||| || |||||||
Sbjct 1174 CCGGGATTTA-CTATGACATCAGCAGAAAA-ACTGACTTCTTTACCTTTATCCCGCAAAA 1231
Query 1858 AG-ACTCTTCCCCGGAGCAAAAAGCTC-CCAAATGGGA-TGCAAAAATCTGGAATCTCTG 1914
|| || ||||| || | |||||| | | | ||| ||| ||||| |||| ||||| | ||
Sbjct 1232 AGAAC-CTTCCTCGAAACAAAAAAC-CGCGGAAT-GGAGTGCAAGAATCGGGAATTTATG 1288
Query 1915 ATGATAA-ACGGACCAAAAGGAGCGAAAATAT-GATCAAATGTAACATCACCATTGATGG 1972
| ||||| | ||| ||||||| | ||||| | ||| ||||||||||| ||||||||||
Sbjct 1289 AAGATAAGA-GGATCAAAAGGGGTGAAAA-GTCGATAAAATGTAACATTTCCATTGATGG 1346
Query 1973 TGGCTTGAACAAAG-GTAAAGATGATCGGAAAAAGGAAATGGATGTGATTTCATTCACAT 2031
| || | | | | ||||||||||| ||||| ||| ||||||||||| || ||||| |
Sbjct 1347 CGACTCG-AGTACGAGTAAAGATGATAAGAAAAGGGACATGGATGTGATATCTTTCACTT 1405
Query 2032 TCTCATCTCCCATCAAAGGTTTATCTTCTGATTCATTATCCTCTACTCAAGGAATTGGTC 2091
|||||||| | |||||||||||| || | || | || | | | ||||||| |
Sbjct 1406 TCTCATCTTCGATCAAAGGTTTA---TC--A-TC-TCAT-C-C-A--CAAGGAACCAAAC 1453
Query 2092 AAGACACAGACTCTGC-AGTTAGTTTCAA--T-ATTGGCGGCGATTCCTTAAATGCTCTG 2147
|||| |||||||||| | | || ||||| | || || || ||||| |||||||| ||
Sbjct 1454 AAGATGCAGACTCTGCTA-TAAGGTTCAATGTGATAGGTGGTGATTCTTTAAATGCACTT 1512
Query 2148 TTGGAGCAAAAGCTCAGAGAGCTGACTTCTAAGCTTGAGTCTTCTAGCTGTAGCCTGACC 2207
|||||||| |||||||| || |||| || ||| |||| || ||||||| |||| ||| |
Sbjct 1513 TTGGAGCAGAAGCTCAGGGAATTGACCTCAAAGATTGAATCATCTAGCTCTAGCTTGATC 1572
Query 2208 CAAGAAGAG-CCTTCATATTCCATTCCAATGGATGAGA-TGAACGGGATGATTTCATTTT 2265
||||||||| | || | |||| || ||| |||| ||| ||| |||||||||||||
Sbjct 1573 CAAGAAGAGTCTTTGA-GTTCCCTTTCAAAGGAT-AGAGCGAATGGGATGATTTCATCGC 1630
Query 2266 CAT-CAGAATAT-GAAAAGTCAACCCAAAACGGTC-TGCGTAAAGTTTTATCAGAGAGTG 2322
| | || ||||| | || | || |||| | ||| || || ||||||| |||||||||
Sbjct 1631 CTTCCA-AATATAGCGAA-TTGACTCAAAGCAGTCTTG-ATAGAGTTTTAACAGAGAGTG 1687
Query 2323 AATCTGTTTCTGACTGCACCTCATTCTATGACAAACAAAAATTCCAGAT-AC-AAG-C-A 2378
||||||||||||||||||| ||||||||| |||| || ||| |||||| | ||| | |
Sbjct 1688 AATCTGTTTCTGACTGCACTTCATTCTATAACAACCAGAAAGTCCAGAAGAAGAAGACGA 1747
Query 2379 -G-A---AGA-GCAC--GAAGTTAGCAGCATTAGCACTG-TGACGGAAGCAGATGATCTA 2429
| | ||| | || |||||||||||||| | ||| | | || ||||| |||||| |
Sbjct 1748 TGCAGGGAGAAGAACAAGAAGTTAGCAGCATCACCAC-GCTTACAGAAGCCGATGATTTT 1806
Query 2430 AGAAGCTCT--TGCAGCAAGGGTTTCTCAGATTGCAGACA-GACCGCAGAATATGGGAC- 2485
| | |||| ||||||||| || |||||||||||||||| ||| | ||||||||| |
Sbjct 1807 -GCA-CTCTCCTGCAGCAAGAGTATCTCAGATTGCAGACATGACAG-AGAATATGGCATG 1863
Query 2486 AATACAGTCCTCATCAGATCAAGAACTCACCTGGGTTTCATTAAATGAGTC 2536
|| |||| ||||||||||| || ||||| |||||||||| ||| |||||
Sbjct 1864 AA-ACAGAGTTCATCAGATCAGGAGCTCACTTGGGTTTCATCAAACGAGTC 1913
Score = 239 bits (129), Expect = 1e-61
Identities = 376/492 (76%), Gaps = 29/492 (6%)
Strand=Plus/Plus
Query 2610 CTCGACTGGGAGTTCGAGTACATATCCGAGATCCTCGGGTCTGACCAACTGATGGTGAAA 2669
||||| |||||| ||||||||||| ||||||||||| |||| || || ||| | ||
Sbjct 1948 CTCGATTGGGAGCTCGAGTACATAACCGAGATCCTCAACTCTGGGCAGCTCATGTTTCAA 2007
Query 2670 GAATATGCTTTGGGGATGGCCAC---TG-A-C-GTATTA-CCTGCGAGCCTCTTTGATGA 2722
|| | ||| | |||| |||| || | | || || ||| ||||||||||||| ||
Sbjct 2008 GACTTTGCCTCAGGGACAACCACTAATGAATCATTACTACCCT-CGAGCCTCTTTGACGA 2066
Query 2723 AATGGAAGGC-C--GAGGAGAAGTAACAG-CAGCCAAAATCA-AGAGAAAGACACTGTTT 2777
||||||| || | |||||| | | | || || | || | |||||| | || |||
Sbjct 2067 AATGGAACGCTCTAGAGGAGCTGCGA-TGTCAATGAAGA-CAGAAAGAAAGGCGCT-TTT 2123
Query 2778 -GATTTTGTGAATAAGTGCTTAGCGCTCAGATGCGAGCA-GATGTTTATGGGTAGCTGCA 2835
|| | ||||||| ||||||||||| | | || || | |||||| || || |||||||
Sbjct 2124 CGACTGTGTGAATCAGTGCTTAGCGGTGAAATTTGA-AAGGATGTTAATTGGAAGCTGCA 2182
Query 2836 GAGGGCT-ATTGGGGAAAGGCGGGTTTTTGTTTGAGCAAAGAGAT-TGGTTAGCAGAAGA 2893
|||| | | || | ||| ||| ||||||| || || |||||| | ||| || |||||
Sbjct 2183 AAGGGATGA-TGATGTCAGGTGGGATTTTGTTGGAACATAGAGATCT-GTTGGCTGAAGA 2240
Query 2894 ACTGAACAGAG-AGATTCATGGGTTGAAGAAGATGAGAGAGATGATGATGGACGAGCTTG 2952
| ||||||||| || | | ||||||||||||||||||||||||||||| ||||||||||
Sbjct 2241 AGTGAACAGAGAAG-TAAAAGGGTTGAAGAAGATGAGAGAGATGATGATCGACGAGCTTG 2299
Query 2953 TTGA-CAAAGAGATGAGCAGTTTCGAAGGGAGATGGCTTGATTTCGAGAGAGAGACGTAT 3011
| || || || |||||| ||||||||||||||||| ||| || ||| ||||||| || |
Sbjct 2300 TGGATCAT-GACATGAGCTGTTTCGAAGGGAGATGGATTGGTTACGAAAGAGAGATGTTT 2358
Query 3012 GAAGAAGGCATTGACATTGAGGGAGAGATAGTCTCT-ACGTTGGTAGATGATTTAGTTAA 3070
|| |||||||| ||||| || |||||||| || ||| | ||||| |||||||||||||
Sbjct 2359 GAGGAAGGCATAGACATGGAAGGAGAGATTGTTTCTGAT-TTGGTTGATGATTTAGTTAG 2417
Query 3071 TGATCTTGTCTC 3082
||||||| ||||
Sbjct 2418 TGATCTTTTCTC 2429
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 128520424021
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5