BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G26920.1
Length=2078
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489522 jgi|Araly1|489522|fgenesh2_kg.6__2656__AT5G26920.1 2728 0.0
> Ahg489522 jgi|Araly1|489522|fgenesh2_kg.6__2656__AT5G26920.1
Length=2044
Score = 2728 bits (1477), Expect = 0.0
Identities = 1877/2065 (91%), Gaps = 48/2065 (2%)
Strand=Plus/Plus
Query 7 ctctctctctctACCTTTCTCTCACACAAAGAGTTTTTTCTTTTAAGACAA-A-AACTCT 64
||||||||||||| || ||||||||||| || |||||||||||||||| || | || |||
Sbjct 1 CTCTCTCTCTCTATCTCTCTCTCACACACAGTGTTTTTTCTTTTAAGATAACATAAATCT 60
Query 65 TTCAAGGTTTTAAATC--TTTGAA-AAAATTCTCTAAACCTAAAAGTGATCAATGAAGAT 121
|||||||||||||||| ||| || |||| |||||||| |||||||||||||||||||||
Sbjct 61 TTCAAGGTTTTAAATCTTTTTTAAGAAAA-TCTCTAAAACTAAAAGTGATCAATGAAGAT 119
Query 122 TCGGAACAGCCCTAGTTTTCATGGGGGTAGTGGTTACAGTGTCTTTAGAGCTCGTAACTT 181
||| ||||| |||| || |||| |||| |||||||||||| ||| ||||||||||||||
Sbjct 120 TCGAAACAGTCCTACTTATCAT-GGGG--GTGGTTACAGTGGCTTAAGAGCTCGTAACTT 176
Query 182 AACATTCAAGAAAGTTGTGAAGAAAGTGATGAGAGACCAGTCAAATAATCAATTCATGAT 241
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 177 AACATTCAAGAAAGTTGTGAAGCAAGTGATGAGAGACCAGTCATATAATCAATTCATGAT 236
Query 242 TCAGATGGAGAACATGATAAGAAGAATTGTCCGAGAGGAGATACAGCGTAG-TCTTCAAC 300
||||||||||||||||||||||||||||||| ||||||||| ||| ||| | |||||||
Sbjct 237 TCAGATGGAGAACATGATAAGAAGAATTGTCGGAGAGGAGACACATCGT-GTTCTTCAAA 295
Query 301 CTTTTCT-CTCTTCATCATGCGTCTCAATGGAGCGATCTCGCTCAGAAACGCCATCGTCT 359
||||| | |||||||||| | ||||||||||||||||| | |||||||||||||| ||
Sbjct 296 CTTTT-TACTCTTCATCACGTGTCTCAATGGAGCGATCGCATTCAGAAACGCCATCATCG 354
Query 360 C-GCTCACGATTGAAGCTGTGCTTCATAAACTCGCCGCCATCATCGATATTCACGGGGTC 418
| || |||||||||||||| | ||||||||||||||||| ||||||||||||||||||||
Sbjct 355 CGGC-CACGATTGAAGCTGCGATTCATAAACTCGCCGCCGTCATCGATATTCACGGGGTC 413
Query 419 CAAGATCGAAGCTGAGGATGGTTCTCCGCTTG-TGATCGAGCTCGTGGACGCCACC-ACA 476
|||||||||||| |||| |||||||||| || |||||||||| ||||||||| || |||
Sbjct 414 CAAGATCGAAGCCGAGGGCGGTTCTCCGC-TGATGATCGAGCTTGTGGACGCC-CCTACA 471
Query 477 AACACTCTAGTTAGTACGGGACCGTTCTCGTCTTCTCGGGTCGAGCTCGTGCCGCTGAAC 536
||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 472 AACACTCGAGTTAGTTCGGGACCGTTCTCATCTTCTCGGGTCGAGCTCGTGCCGCTGAAC 531
Query 537 GCTGATTTCACGGAAGAAAGCTGGACCGTTGAGGGATTTAATCGGAATATTCTCACGCAA 596
||| ||||||||||||||||||||||||| || |||||||| ||||||||||||| ||||
Sbjct 532 GCTAATTTCACGGAAGAAAGCTGGACCGTGGACGGATTTAAGCGGAATATTCTCAAGCAA 591
Query 597 CGTGAAGGGAAACGTCCGTTGCTCACTGGAGACCTAACGGTGATGCTTAAAAACGGTGTT 656
|||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 592 CGTGAAGGGAAACGACCGTTGCTCACTGGAGATCTAACGTTGATGCTTAAAAACGGTGTT 651
Query 657 GGAGTTATAACCGGAGATATAGCTTTCTCGGATAACTCGAGCTGGACTAGGAGTCGGAAG 716
|||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 652 GGAGTTATCGCCGGAGATATCGCTTTCTCGGATAATTCGAGCTGGACTAGGAGTCGGAAG 711
Query 717 TTCCGGTTAGGTGCTAAGTTGACCGGAGATGGAGCCGTGGAGGCGAGAAGTGAAGCTTTT 776
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 712 TTCCGGTTAGGTGCTAAGTTGACCGGAGATGGAGCCGTGGAGGCGAGAAGTGAAGCCTTT 771
Query 777 GGATGTAGAGACCAACGAGGAGAATCTTATAAAAAACATCATCCTCCGTGCCCCAGTGAT 836
|||||| ||||||||||||||||||||||| ||||||| ||||||||| ||||| ||||
Sbjct 772 GGATGTTTAGACCAACGAGGAGAATCTTATAGAAAACATTATCCTCCGTACCCCAATGAT 831
Query 837 GAGGTTTGGAGACTAGAGAAAATCGCGAAAGATGGAGTTTCGGCAACGCGTTTGGCTGAA 896
|| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 832 GACGTTTGGAGACTAGAGAAAATCGCGAAAGATGGCGTTTCGGCAAAGCGTTTGGCTGAA 891
Query 897 CGCAAGATTT-TAACCGTCAAGGATTTTCGCCGTTTGTATACTGTAAATCGAAATGAGTT 955
||| |||||| || |||||||||| ||||||||||||||||||||||||| ||||||| |
Sbjct 892 CGCGAGATTTATA-CCGTCAAGGAGTTTCGCCGTTTGTATACTGTAAATCCAAATGAGCT 950
Query 956 ACACAACATAATTGGTGCAGGGGTCTCAAAGAAAACATGGAACACAATTGTATCACATGC 1015
||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||| ||
Sbjct 951 ACACAACATAATTGGTGTAGGGATCTCAAAGAAAACATGGAATACAATTGTATCACACGC 1010
Query 1016 CATGGATTGCGTTTTGGACGAAACAGAGTGTTACATTTACAATGCAAACACTCCGGGCGT 1075
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||
Sbjct 1011 CATGGATTGCGTTTTGGACGAAACAGAGTGTTACACTTACGATGCAAACACTCCGGGAGT 1070
Query 1076 AACACTTCTCTTCAACTCTGTTTATGAGTTGATAAGAGTGTCATTCAATGGCAACGATAT 1135
||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 1071 AACTCTTCTCTTCAACTCTGTTTATGAGTTGATAAAAGTGTCATTCAATGGCGACGATAT 1130
Query 1136 CCAAAACCTTGATCAGCCAATTCTAGACCAATTAAAGGCCGAAGCTTATCAAAACCTTAA 1195
||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1131 CCAAAACCTCGATCAGCCAATTCTAAACCAATTAAAGTTTGAAGCTTATCAAAACCTTAA 1190
Query 1196 CCGCATTACAGCGGTTAACGATAGGACCTTTGTGGGTCATCCACAAAGGTCCTTACAGTG 1255
|||||||||||| |||| ||||||||||||| |||||||||| |||||||||||||||||
Sbjct 1191 CCGCATTACAGCCGTTACCGATAGGACCTTTATGGGTCATCCGCAAAGGTCCTTACAGTG 1250
Query 1256 CCCGCAAGATCCTGGATTTGTCGTAACATGTTCTGGATCGCAGCACATCGACTTTCAAGG 1315
|||||||||||||||||||| | ||||||||||||||||||||||||| | |||||||||
Sbjct 1251 CCCGCAAGATCCTGGATTTGGCATAACATGTTCTGGATCGCAGCACATTGCCTTTCAAGG 1310
Query 1316 AAGTTTGGATCCATCAAGCTCTTCGATGGCTCTTTGCCACAAAGCTTCAAGCTCAACGGT 1375
|||||||||||||||||||||||| ||| | ||||||||| |||| |||||||||||||
Sbjct 1311 AAGTTTGGATCCATCAAGCTCTTCAATGTCGCTTTGCCACGCAGCTGCAAGCTCAACGGT 1370
Query 1376 CCACCCTGATGTCCTGATGAGTTTTGATAACTCATCAACCGCGAGGTTTCATATCGACAA 1435
|||||||||||| |||||||||| ||||||||| ||||| ||| ||||||||| ||||
Sbjct 1371 CCACCCTGATGTGTTGATGAGTTTCGATAACTCACCAACCCCGACTTTTCATATCAACAA 1430
Query 1436 AAAGTTCTTACCGACTTTCGGAAACAGCTTCAAAGTAAGTGAACTCGATCAAGTACACGG 1495
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1431 AAAGTTCTTACCGACTTTCGGAAACAGCTTCAAAGTAAGTGAACTCGATCCAGTACCCGG 1490
Query 1496 AAAATCACAAACTGTTGTGACAAAAGGTTGTATAGAGAATAACGAGGAGGATGAGAACGC 1555
||||||||||||||| ||||||| ||||||||| |||||| |||||||||||||||||
Sbjct 1491 AAAATCACAAACTGTAGTGACAAGAGGTTGTATCGAGAAT---GAGGAGGATGAGAACGC 1547
Query 1556 GTTTT-CTTATCATCACCATGATGACATGACCTCAAGCTGGTCACCTGGTACGCACCAAG 1614
|||| |||||||||| ||| ||||||||||| ||| ||||||||||||||||||| |||
Sbjct 1548 -TTTTGCTTATCATCAACATTATGACATGACCACAAACTGGTCACCTGGTACGCACGAAG 1606
Query 1615 CCGTTGAAACGATGTTTCTTACCGTGTCTGAGACGGAAGAAGCTGGAATGTTCGATGTTC 1674
||||||||||||||| |||||||||||||| ||||||| || |||| |||||||||||||
Sbjct 1607 CCGTTGAAACGATGTATCTTACCGTGTCTGGGACGGAACAAACTGGTATGTTCGATGTTC 1666
Query 1675 ATTTTGCAAACGTTAATTTGGGATCTCCAAGAGCCAGGTGGTGTAAGGTTAAGGCAGCTT 1734
|| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1667 ATCTTACAAACGTTAATTTGGGATCTCCGAGAGCCAGGTGGTGTAAGGTTAAGGCAGCTT 1726
Query 1735 TCAAGGTTAGGGCAGCTTTTAAGGAAGTCCGGAGACACACAACTGCCAGAAATCCGAGGG 1794
||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 1727 TCAAGGTCAGGGCAGCTTTTAAGGAAGTCCGGAGACACACAACTGCCAAAAACCCGAGGG 1786
Query 1795 AAGGCTTGTAAGAACTCTTGCCTACC-TATTAAAATCAGCGGTTTCTTGCGTTGCACGAT 1853
||||||||||||| ||||||||||| ||||||| ||||||||||||||| ||||||||
Sbjct 1787 AAGGCTTGTAAGATTTCTTGCCTACCGTATTAAATTCAGCGGTTTCTTGCATTGCACGA- 1845
Query 1854 AAATGTGTATATATATTTGTGAATAGGGTTAGATAAATGGATCCCGGCCATTGAGTTACG 1913
|||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||
Sbjct 1846 AAATGTGTATATAT-TT-GTGAATAGGGCTAGATAAATGGATCCCGGCCATTGAGTTACG 1903
Query 1914 GGGATTAGCCTTTGCGTATATCA--------AAGT---AtttttttCCCTGGG-T-AAGT 1960
|||||||| ||||| |||||||| || | |||||||||||| | | || |
Sbjct 1904 GGGATTAGTCTTTGTGTATATCATGTTTGTTAATTTTTATTTTTTTCCCTTGAATCAA-T 1962
Query 1961 ATAGCTGTGGCACAGGGTTTGTAAG-TTGTAACCATATGCCGTATAAGAATCAGAGGTTT 2019
|||||||||||||||||||||||| || | | |||||| || |||| ||||| ||||
Sbjct 1963 ATAGCTGTGGCACAGGGTTTGTAACCTTTTTA---TATGCCATAGAAGATTCAGAAGTTT 2019
Query 2020 CTTGTTGTACACGAAAGCTATGTAT 2044
||||| | |||||||||||||||||
Sbjct 2020 CTTGTGGGACACGAAAGCTATGTAT 2044
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78161182740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5