BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G26930.1

Length=628
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg894620 jgi|Araly1|894620|Al_scaffold_0006_2616                    460    4e-129


> Ahg894620 jgi|Araly1|894620|Al_scaffold_0006_2616
Length=372

 Score =  460 bits (249),  Expect = 4e-129
 Identities = 328/365 (90%), Gaps = 9/365 (2%)
 Strand=Plus/Plus

Query  127  ATGGATCCAAGGAAGCTACTATCTTGTTCATCCTCTTACGTGTCAGTGAGAATGAAAGAA  186
            |||||| |||| |||||||||||||||||||| |||||| |||||  ||||||| |||||
Sbjct  1    ATGGATTCAAGAAAGCTACTATCTTGTTCATCTTCTTACATGTCAACGAGAATGGAAGAA  60

Query  187  GAGAAGGGGACAATTAGGTGTTGCAGTGAGTGTAAGACCACCAAGACACCAATGTGGAGA  246
            ||||||| |||| |||||||||||||||| || |||||||||||||||||||||||||||
Sbjct  61   GAGAAGGAGACAGTTAGGTGTTGCAGTGATTGCAAGACCACCAAGACACCAATGTGGAGA  120

Query  247  GGTGGACCAACTGGTCCTAAGTCACTTTGCAATGCATGTGGAATTAGACACAGAAAACAG  306
            ||||||||||||||||| ||||||||||||||||||||||| || |||  ||| ||||||
Sbjct  121  GGTGGACCAACTGGTCCCAAGTCACTTTGCAATGCATGTGGGATCAGATTCAGGAAACAG  180

Query  307  AGACGATCAGAGTTATTGGGTATTCATATTATTCGCAGCCACAAAAGCTTAGCCTCCAAG  366
            ||||||||||| ||||||||||||  |||||||| ||||||| || ||||||| ||||||
Sbjct  181  AGACGATCAGAATTATTGGGTATTTGTATTATTCACAGCCACCAAGGCTTAGCTTCCAAG  240

Query  367  AAGATAAA-CCTAT-T-ATCATCAT---CA-CAC--GGTGGCGTGGCGGTGAAGAAACGA  417
            |||||||| || |  | ||||||||   || |||  ||||||||||| ||||||||||||
Sbjct  241  AAGATAAAACCAAAATCATCATCATTATCATCACATGGTGGCGTGGCTGTGAAGAAACGA  300

Query  418  AGGAGTCTAAAGGAGGAAGAACAAGCTGCTTTGTGTCTATTGTTATTGTCTTGTAGCTCT  477
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  301  AGGAGTCTAAAGGAGGAAGAACAAGCTGCTTTGTGTCTACTGTTATTGTCTTGTAGCTCT  360

Query  478  GTTTT  482
            |||||
Sbjct  361  GTTTT  365



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22988118951


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5