BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G26950.1
Length=870
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942291 jgi|Araly1|942291|scaffold_602835.1 985 0.0
Ahg489617 jgi|Araly1|489617|fgenesh2_kg.6__2751__AT5G27070.1 976 0.0
Ahg489614 jgi|Araly1|489614|fgenesh2_kg.6__2748__AT5G27944.1 798 0.0
Ahg489532 jgi|Araly1|489532|fgenesh2_kg.6__2666__AT5G27945.1 318 4e-86
> Ahg942291 jgi|Araly1|942291|scaffold_602835.1
Length=859
Score = 985 bits (533), Expect = 0.0
Identities = 742/839 (88%), Gaps = 30/839 (4%)
Strand=Plus/Plus
Query 1 ATGGATTCTTCAATGTCGACGAAGAAGAAAACCAAATTGTCTGTGAGAAACCAAACTTGT 60
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 21 ATGGATTCTTCAATGTCGACGAAGAAGAAAACTAAATTGTCTCTGAGAAACCAAACTTGT 80
Query 61 TTCAAGAAATCGTCCCTGTCTTCTTCTTCCACTGCAAAAAAGACCACGAATTTGTCTATG 120
|||||||||||||| || ||||||||| |||||||||||||||||||| |||||||||
Sbjct 81 TTCAAGAAATCGTCTCTCTCTTCTTCT---ACTGCAAAAAAGACCACGAACTTGTCTATG 137
Query 121 AGAGAACAGACCATGTTTAAGAAAGCCCTCGAGCTTTCGACTCTGTGCAACATCGATGTC 180
|||||| |||| ||||||||||||||| |||||||||| ||||||||| ||||||| |||
Sbjct 138 AGAGAAGAGACTATGTTTAAGAAAGCCTTCGAGCTTTCAACTCTGTGCGACATCGAAGTC 197
Query 181 TGTGTCATATACTATGGTCGTGACGGAAAACTCATCAAGACATGGCCGGATGATCAATCA 240
||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 198 TGTGTCATATATTATGGTCGTGACGGAGAACTCATCAAGACATGGCCGGAGGATCAATCC 257
Query 241 AAAGTTCGAGACATGGCTGAGAGGTTTAGCAGATTACACGAGAGAGAGCGATGCAAGAAA 300
|| |||||||||||||||||||| |||| || | || |||| |||||| || ||||||||
Sbjct 258 AAGGTTCGAGACATGGCTGAGAGATTTACCAAACTAAACGACAGAGAGAGACGCAAGAAA 317
Query 301 AGAACCAACCTTTCTCTGTTTCTACGTAAGAAGATCCTCGACGACACTAAATTGTCGGAG 360
|| || |||||||||||||| ||| | ||||||||||||||||||| ||| | | ||||
Sbjct 318 AGCACAAACCTTTCTCTGTTGCTAAGGAAGAAGATCCTCGACGACAATAAGCTCTTGGAG 377
Query 361 AAAGTCTTAGAGATGGAGGATTCGTTAGAAAGTGGTCTACGAGTACTACAAGATAAGCTT 420
||||| ||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 378 AAAGTGTTAGAGATGAAGGATTCGTTAGAAAGTGGTCTACGGGTATTACAAGATAAGCTT 437
Query 421 CTGTTACTCCAACCCGAGAAAAACCAGACCGAGTTTGGTCAGACCCGTGCGGTTTCTTCC 480
|||||||||||||| ||||| ||||| |||||| ||||||| ||||| ||||||||||
Sbjct 438 CTGTTACTCCAACCAGAGAA---CCAGATCGAGTTAGGTCAGAGCCGTGTGGTTTCTTCC 494
Query 481 ACAACGAATCCATTGTCTCCTCCTCCTTCGCTAATTGAGGATCATCGTCATCAACAACGG 540
|||||||||||||||||| | |||| | | | | |||||| |||||||| ||
Sbjct 495 ACAACGAATCCATTGTCTT-T--TCCT--G-T----G-G-ATCATC---ATCAACAATGG 539
Query 541 ACAGAACCATTGATGAGTGGTGTGTCAAACACAGAGCAAGACCTATCGACGTCATCATTG 600
||| |||||||| | | ||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 540 ACAAAACCATTGGTCAATGGTGTGCCAAACGCAGAGAAAGACCTATCGACGTCATCATTG 599
Query 601 AGTCAAAATCAGAGCAAATTTTCTGTCTTTCTCTATAACCATGACAACTG-TAGCTTCTA 659
| |||| |||||||||||||||| ||||||||||||||||||||||| || |||||||||
Sbjct 600 AATCAACATCAGAGCAAATTTTCAGTCTTTCTCTATAACCATGACAA-TGGTAGCTTCTA 658
Query 660 TCAAGTACCTGACTCTGTTTCTAGCTTTGAC-AGTTTGACGAGTACTGG-TTTACTTGGG 717
|||||| || ||||||||||||||||||||| | | ||||||||| || ||||||||||
Sbjct 659 TCAAGTCCCAGACTCTGTTTCTAGCTTTGACCAATC-GACGAGTAC-GGCTTTACTTGGG 716
Query 718 GAACAAGGATCTGGTCTGGGAAGTAGCTTTGATCTTCCCATGGTTTTTCCTCCTCAGATG 777
| ||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||
Sbjct 717 GCACAAGGATCTGGTCTTAGAAGTAACTTTGATCTTCCCATGGTGTTTCCTCCTCAGATG 776
Query 778 CAGACACAAAC-CC-C-ACTTGTCCCCTTTGATCAGTTTGCGCCATGGAATCAAGCACC 833
|||| |||| | || | |||||||| |||||||||||||||||||||||||||||||||
Sbjct 777 CAGAAACAAGCTCCACCACTTGTCCTCTTTGATCAGTTTGCGCCATGGAATCAAGCACC 835
> Ahg489617 jgi|Araly1|489617|fgenesh2_kg.6__2751__AT5G27070.1
Length=834
Score = 976 bits (528), Expect = 0.0
Identities = 758/864 (88%), Gaps = 36/864 (4%)
Strand=Plus/Plus
Query 13 ATGTCGACGAAGAAGAAAACCAAATTGTCTGTGAGAAACCAAACTTGTTTCAAGAAATCG 72
|||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct 1 ATGTCGACGAAGAAGAAAACCAAACTGTCTCTGAGAAACCAAACTCGTTTCAAGAAATCA 60
Query 73 TCCCTGTCTTCTTCTTCCACTGCAAAAAAGACCACGAATTTGTCTATGAGAGAACAGACC 132
|| ||||||||||| | |||||||||||||||||||||||||||||||||||| | ||
Sbjct 61 TCTCTGTCTTCTTC-T--ACTGCAAAAAAGACCACGAATTTGTCTATGAGAGAAGACACA 117
Query 133 ATGTTTAAGAAAGCCCTCGAGCTTTCGACTCTGTGCAACATCGATGTCTGTGTCATATAC 192
||||||||||||||| |||||||||| ||||||||| |||| || ||||||||||||||
Sbjct 118 ATGTTTAAGAAAGCCTTCGAGCTTTCAACTCTGTGCGACATTGAAGTCTGTGTCATATAT 177
Query 193 TATGGTCGTGACGGAAAACTCATCAAGACATGGCCGGATGATCAATCAAAAGTTCGAGAC 252
|| |||||||||||| |||||||||||||||||||||| ||| ||||||| |||||||||
Sbjct 178 TACGGTCGTGACGGAGAACTCATCAAGACATGGCCGGAAGATAAATCAAAGGTTCGAGAC 237
Query 253 ATGGCTGAGAGGTTTAGCAGATTACACGAGAGAGAGCGATGCAAGAAAAGAACCAACCTT 312
||||||||||| |||| || | || |||| |||||| || |||||||||| || ||||||
Sbjct 238 ATGGCTGAGAGATTTACCAAACTAAACGATAGAGAGAGACGCAAGAAAAGCACAAACCTT 297
Query 313 TCTCTGTTTCTACGTAAGAAGATCCTCGACGAC-ACTAAATTGTCGGAGAAAGTCTTAGA 371
|||||||| ||| | |||||||||||||||||| | ||| | ||||||||||| |||||
Sbjct 298 TCTCTGTTGCTAAGGAAGAAGATCCTCGACGACGA-TAAGCTCTCGGAGAAAGTTTTAGA 356
Query 372 GATGGAGGATTCGTTAGAAAGTGGTCTACGAGTACTACAAGATAAGCTTCTGTTACTCCA 431
|||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 357 GATGAAGGATTCGTTAGAAAGTGGTCTACGGGTATTACAAGATAAGCTTCTGTTACTCCA 416
Query 432 ACCCGAGAAAAACCAGACCGAGTTTGGTCAGACCCGTGCGGTTTCTTCCACAACGAATCC 491
|||||| ||| |||||||||||| ||||||| ||||| |||||||||||||||||||||
Sbjct 417 ACCCGA-AAA--CCAGACCGAGTTAGGTCAGAGCCGTGTGGTTTCTTCCACAACGAATCC 473
Query 492 ATTGTCTCCTCCTCCTTCGCTAATTGAGGATCATCGTCATCAACAACGGACAGAACCATT 551
||||||| || |||| | | | | |||||| ||| |||||| |||||||| || |
Sbjct 474 ATTGTCT--TC-TCCT--G--A---G-G-ATCATCATCAACAACAATGGACAGAATCACT 521
Query 552 GATGAGTGGTGTGTCAAACACAGAGCAAGACCTATCGACGTCATCATTGAGTCAAAATCA 611
| ||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 522 GGTGAATGGTGTGTCAAACACAGAGCAAGACCTATCGATGTCATCATTGAGTCAACATCA 581
Query 612 GAGCAAATTTTCTGTCTTTCTCTATAACCATGACAACTG-TAGCTTCTATCAAGTACCTG 670
|||||||||||| |||||||||||||||||||||| || |||||||| |||| | ||||
Sbjct 582 GAGCAAATTTTCAATCTTTCTCTATAACCATGACAA-TGGTAGCTTCTGTCAACTCCCTG 640
Query 671 ACTCTGTTTCTAGCTTTGAC-AGTTTGACGAGTACTGGTTTACTTGGGGAACAAGGATCT 729
|||||||||||||||||||| | | || | || || |||||||| |||||||||
Sbjct 641 ACTCTGTTTCTAGCTTTGACCAAT----CG-G--CT--TT-ACTTGGGGCACAAGGATCA 690
Query 730 GGTCTGGGAAGTAGCTTTGATCTTC--CC-ATGGTTTTTCCTCCTCAGATGCAGACACAA 786
| ||| |||||| |||||||| || || ||||| ||||||||||||||||||||||||
Sbjct 691 GATCTAAGAAGTAACTTTGATCATCTTCCTATGGTGTTTCCTCCTCAGATGCAGACACAA 750
Query 787 ACCCCACTTGTCCCCTTTGATCAGTTTGCGCCATGGAATCAAGCACCGTCGTTTGCAGAT 846
||||||||||||| ||||||||||||||||||||||||||||||||| || ||| |||||
Sbjct 751 ACCCCACTTGTCCACTTTGATCAGTTTGCGCCATGGAATCAAGCACCATCTTTTACAGAT 810
Query 847 CCAATGATGTTCCCTTATAATTAG 870
|||||||||||| |||||||||||
Sbjct 811 CCAATGATGTTCTCTTATAATTAG 834
> Ahg489614 jgi|Araly1|489614|fgenesh2_kg.6__2748__AT5G27944.1
Length=651
Score = 798 bits (432), Expect = 0.0
Identities = 598/675 (89%), Gaps = 24/675 (4%)
Strand=Plus/Plus
Query 1 ATGGATTCTTCAATGTCGACGAAGAAGAAAACCAAATTGTCTGTGAGAAACCAAACTTGT 60
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 1 ATGGATTCTTCAATGTCGACGAAGAAGAAAACTAAATTGTCTCTGAGAAACCAAACTTGT 60
Query 61 TTCAAGAAATCGTCCCTGTCTTCTTCTTCCACTGCAAAAAAGACCACGAATTTGTCTATG 120
|||||||||||||| || ||||||||| |||||||||||||||||||| |||||||||
Sbjct 61 TTCAAGAAATCGTCTCTCTCTTCTTCT---ACTGCAAAAAAGACCACGAACTTGTCTATG 117
Query 121 AGAGAACAGACCATGTTTAAGAAAGCCCTCGAGCTTTCGACTCTGTGCAACATCGATGTC 180
|||||| |||| ||||||||||||||| |||||||||| ||||||||| ||||||| |||
Sbjct 118 AGAGAAGAGACTATGTTTAAGAAAGCCTTCGAGCTTTCAACTCTGTGCGACATCGAAGTC 177
Query 181 TGTGTCATATACTATGGTCGTGACGGAAAACTCATCAAGACATGGCCGGATGATCAATCA 240
||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 178 TGTGTCATATATTATGGTCGTGACGGAGAACTCATCAAGACATGGCCGGAGGATCAATCC 237
Query 241 AAAGTTCGAGACATGGCTGAGAGGTTTAGCAGATTACACGAGAGAGAGCGATGCAAGAAA 300
|| |||||||||||||||||||| |||| || | || |||| |||||| || ||||||||
Sbjct 238 AAGGTTCGAGACATGGCTGAGAGATTTACCAAACTAAACGACAGAGAGAGACGCAAGAAA 297
Query 301 AGAACCAACCTTTCTCTGTTTCTACGTAAGAAGATCCTCGACGACACTAAATTGTCGGAG 360
|| || |||||||||||||| ||| | ||||||||||||||||||| ||| | ||||||
Sbjct 298 AGCACAAACCTTTCTCTGTTGCTAAGGAAGAAGATCCTCGACGACAATAAGCTCTCGGAG 357
Query 361 AAAGTCTTAGAGATGGAGGATTCGTTAGAAAGTGGTCTACGAGTACTACAAGATAAGCTT 420
||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 358 AAAGTCTTAGAGATGAAGGATTCGTTAGAAAGTGGTCTACGGGTATTACAAGATAAGCTT 417
Query 421 CTGTTACTCCAACCCGAGAAAAACCAGACCGAGTTTGGTCAGACCCGTGCGGTTTCTTCC 480
|||||||||||||||||| ||| | |||||| ||||||| ||||| ||||||||||
Sbjct 418 AAGTTACTCCAACCCGAGAA---CCAAATCGAGTTAGGTCAGAGCCGTGTGGTTTCTTCC 474
Query 481 ACAACGAATCCATTGTCTCCTCCTCCTTCGCTAATTGAGGATCATCGTCATCAACAACGG 540
|||||||||||||||||| || ||||||||||||||||||||||| |||||||||
Sbjct 475 ACAACGAATCCATTGTCT--TC-TCCTTCGCTAATTGAGGATCATC---ATCAACAAC-- 526
Query 541 ACAGAACCATTGATGAGTGGTGTGTCAAACACAGAGCAAGACCTATCGACGTCATCATTG 600
| | |||||||||| | |||||||||||||||| ||||||||||||||||||
Sbjct 527 A-ATCACCATTGATG--T-------CAAACACAGAGCAAGAGCTATCGACGTCATCATTG 576
Query 601 AGTCAAAATCAGAGCAAATTTTCTGTCTTTCTCTATAACCATGACAACTGTAGCTTCTAT 660
|||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||| |
Sbjct 577 AGTCAACATCAGAGCAAATTTTCAGTCTTTCTCTATAACCATGACAACGGTAGCTTCTGT 636
Query 661 CAAGTACCTGACTCT 675
||| | ||| |||||
Sbjct 637 CAACTCCCTAACTCT 651
> Ahg489532 jgi|Araly1|489532|fgenesh2_kg.6__2666__AT5G27945.1
Length=1290
Score = 318 bits (172), Expect = 4e-86
Identities = 253/289 (88%), Gaps = 18/289 (6%)
Strand=Plus/Minus
Query 310 CTTTCTCTGTTTCTACGTAAGAAGATCCTCGACGACACTAAATTGTCGGAGAAAGTCTTA 369
||||||||||| ||||||||||||||||||||||||| ||| | ||||||||||| |||
Sbjct 271 CTTTCTCTGTTACTACGTAAGAAGATCCTCGACGACAGTAAGCTCTCGGAGAAAGTGTTA 212
Query 370 GAGATGGAGGATTCGTTAGAAAGTGGTCTACGAGTACTACAAGATAAGCTTCTGTTACTC 429
|||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 211 GAGATGAAGGATTCGTTAGAAAGTGGTCTACGGGTATTACAAGATAAGCTTCTGTTACTC 152
Query 430 CAACCCGAGAAAAACCAGACCGAGTTTGGTCAGACCCGTGCGGTTTCTTCCACAACGAAT 489
||||| ||||| |||||||||||| ||||||| ||||| ||||||||||||||||||
Sbjct 151 CAACCAGAGAA---CCAGACCGAGTTAGGTCAGAGACGTGCCGTTTCTTCCACAACGAAT 95
Query 490 CCATTGTCTCCTCCTCCTTCGCTAATTGAGGATCATCGTCATCAACAACGGACAGAACCA 549
||||||||| || |||| | | | | |||||| |||||||| |||||||||||
Sbjct 94 CCATTGTCT--TC-TCCT--G-T----G-G-ATCATC---ATCAACAATGGACAGAACCA 50
Query 550 TTGATGAGTGGTGTGTCAAACACAGAGCAAGACCTATCGACGTCATCAT 598
||| ||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 49 TTGGTGAATGGTGTGTCAAACACAGAGCAAGAGCTATCGACGTCATCAT 1
Score = 126 bits (68), Expect = 2e-28
Identities = 78/83 (94%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 1 ATGGATTCTTCAATGTCGACGAAGAAGAAAACCAAATTGTCTGTGAGAAACCAAACTTGT 60
|||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||
Sbjct 356 ATGGATTCTTCAATGTCGACGAAGAAGAAAACCAAACTCTCTCTGAGAAACCAAACTTGT 297
Query 61 TTCAAGAAATCGTCCCTGTCTTC 83
|||||||||||||| || |||||
Sbjct 296 TTCAAGAAATCGTCTCTCTCTTC 274
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32213864865
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5