BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G26960.1
Length=1416
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489527 jgi|Araly1|489527|fgenesh2_kg.6__2661__AT5G26960.1 2050 0.0
> Ahg489527 jgi|Araly1|489527|fgenesh2_kg.6__2661__AT5G26960.1
Length=1370
Score = 2050 bits (1110), Expect = 0.0
Identities = 1292/1380 (94%), Gaps = 11/1380 (1%)
Strand=Plus/Plus
Query 1 ATGTCAGAAAACTGCAATTCTCGCCATTTCTCATGGCTCATGAAATCTTGTTTACCAAAT 60
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCAGAGAGCTGCAATTCTCGCCATTTCTCATGGCTCATGAAATCTTGTTTACCAAAT 60
Query 61 CCCTCCGACGCCAAATCACTAG-TCCAGATCCACCAACCGTCGTCCACGGCGGCGAATTC 119
|||||||||||||||||||| | ||| ||||||||||||||||||||||||||| |||||
Sbjct 61 CCCTCCGACGCCAAATCACTTGTTCC-GATCCACCAACCGTCGTCCACGGCGGCCAATTC 119
Query 120 TTCAGCTACAATCGCTTCTCTACCTGACGATTTACTCCTCGAATGTATCTCAAGAGTCCC 179
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 120 TTCAGCTACAATCGCTTCTCTACCTGACGATTTACTCCTCGAATGTATCTCTAGAGTCCC 179
Query 180 TTCCTCTTCAATTCCTTCTCTCGCCGTCGTTTGTCGCCGTTGGTCTCGTCTCCTCCACTC 239
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 180 TTCCTCTTCAATTCCTTCTCTCGCCGCCGTTTGTCGCCGTTGGTCTCGTCTCCTCCTCTC 239
Query 240 TCCTTACTTTCTCCATCTCCGTCGTCGTTTAGGTTTGCTCCGACATTCTCTCTTCGCGAT 299
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 240 TCCTTACTTTCTCCACCTCCGTCGTCGTTTAGGTTTGCTCCGGCATTCTCTCTTCGCGAT 299
Query 300 ATCCACCGTCGATTCAGGACTTTTCGCCGCGGATTTGCAGTTTCAGTCCGAGATTGCGTC 359
||| |||| ||||||||||||||||| |||||||||||||||||||| |||||||| ||
Sbjct 300 CTCCGCCGTTGATTCAGGACTTTTCGCTGCGGATTTGCAGTTTCAGTCTGAGATTGCTTC 359
Query 360 GTGGAAAGTGTCTCTTGCGGTTTCGAGTAGGTCTGTTGGCGTTGACGGTAGTTATGGAAG 419
|||||||||||||||||||||||||| |||||||||| | |||||| | | | ||
Sbjct 360 GTGGAAAGTGTCTCTTGCGGTTTCGAATAGGTCTGTTTGTGTTGAC-G--G--A---AA- 410
Query 420 TTTATCTCATGCTCGCGCGGCGGCGATTGGACCTAGGGTTTATGTTGTTAGTAGAAATGC 479
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 411 TTTATCTCATGCTCGTGCGGCGGCGATTGGTCCTAGGGTTTATGTTGTTAGTAGAAATGC 470
Query 480 TGTTTTGAGATACGATTCGTGGATGGGAACGCTTAATTTGAGATCTCCGATGATTTTCCC 539
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 471 TGTTTTGAGATACGATTCGTGGATGGGAACGCTTAATTTGAGATCTCCGATGCTTTTTCC 530
Query 540 TCGGAAGAAATTCGCAATCGCGGTTGTTTCTGGTAAGATCTACGTTGCTGGAGGTGGTGG 599
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 531 TCGGAAGAAATTCGCAATCGCGGTGGTTTCTGGTAAGATCTATGTTGCTGGAGGTGGTGG 590
Query 600 TGGTTCGGAGGTTGCGGCGGCGGTGGAAGAGTATGATCCGGAGTTGAATCGGTGGGAAGT 659
||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 591 TGGTTCGGAAGTTGCGGCGGCGGTGGAAGAGTATGATCCGGAGTTAAATCGATGGGAAGT 650
Query 660 TGTGACTCAATCGGCGAGGAAGAGATACGGTTGCATCGGAGCAGCCGTTGACGGAGTTTT 719
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 651 TGTGACTCAATCGGCGAGGAAGAGATATGGTTGCATTGGAGCAGCCGTTGACGGAGTTTT 710
Query 720 TTATGTGATCGGTGGATTGAAAATTGGGAATGAGACCTCACGCGCGGTGGCGGCGCGTGC 779
||||||||| |||||||||||||||||||| ||||| ||||||||| |||||||||||||
Sbjct 711 TTATGTGATTGGTGGATTGAAAATTGGGAACGAGACTTCACGCGCGATGGCGGCGCGTGC 770
Query 780 TTATGCGAGCTCTATGGATCTTTTCGATGTGGAGTCGCGTCAGTGGTTAAGGAGTCGTTC 839
|||||| ||||||||||||||||| |||||||| |||||||||||| | |||||||||||
Sbjct 771 TTATGCAAGCTCTATGGATCTTTTTGATGTGGAATCGCGTCAGTGGCTGAGGAGTCGTTC 830
Query 840 GGTTCCTGGTGGTGGATGTGTAGTGGCGGCGTGTGCGGCGGTTGGATATGTGTATGTGCT 899
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 GGTTCCTGGCGGTGGATGTGTAGTGGCGGCGTGTGCGGCGGTTGGATATGTGTATGTGCT 890
Query 900 AACCAGTCACGCGGTGGAGCTTTCGTTTTGGCGATTTGATGCGCGTCGTCGTGGTGGAAA 959
| ||| || |||||||||||||||||||||||||||||||| || ||||| ||||| ||
Sbjct 891 TAGCAGCCATGCGGTGGAGCTTTCGTTTTGGCGATTTGATGCTCGCCGTCGCGGTGGCAA 950
Query 960 CAGCGGGTTTGGAGAATGGCAGAGGCTGAAAAGTCCGCCGTTACCGGCACAGGTGCGGTT 1019
||||||||| || ||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 951 CAGCGGGTTCGGGGAATGGCGGAGGCTGAAAAGTCCGCCGTTACCGGCACAAGTGCGGTT 1010
Query 1020 AGATGGAACGGTGAGGTTTAGCTGCGTCGGAGTGGAAGATAAAGTGGCGGTGGTTCAGGT 1079
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1011 AGATGGAACAGTGAGGTTTAGCTGCATCGGAGTGGAAGATAAAGTGGCGGTGGTTCAGGT 1070
Query 1080 GGTGGGATGCATTGACGATTTGCTTCGGCGGAGTGGGAGGGGTGAGAGAGGGATTAGAGA 1139
|||||||||||||||||||||||| ||||||||||| ||| ||||||||||| |||||||
Sbjct 1071 GGTGGGATGCATTGACGATTTGCTCCGGCGGAGTGGAAGGAGTGAGAGAGGGCTTAGAGA 1130
Query 1140 AAGCCTTGTGTTGCTGTATGATACGACGGAGGGAGAGTGGAGGAGAGCGGCGGATTTACC 1199
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1131 AAGCCTTGTGTTGCTGTACGATACGACGGATGGAGAGTGGAGGAGAGCGGCGGATTTACC 1190
Query 1200 TGAGATGATTACACGCGCCGCCTGTGCGTGTGTGGAGTGGTAAGAGTGGAGACCACGGCG 1259
||||||||||||||||| ||||||||||||||||||||||||||| | |||| ||||||
Sbjct 1191 GGAGATGATTACACGCGCGGCCTGTGCGTGTGTGGAGTGGTAAGAGCGCAGACAACGGCG 1250
Query 1260 CAGGATTATGGGTACGAGAAGTTGGAAGATGCCAACGTACGCAGGATATATTAAAGTGGG 1319
|||||||| ||||||||||| | |||||| || |||||||||||||| ||||||||||
Sbjct 1251 CAGGATTAAGGGTACGAGAAATGGGAAGAGGCTAACGTACGCAGGATTTATTAAAGTGAT 1310
Query 1320 CAAAAACAATATCATTATGATTGGTGCACATGTTTACTGTATGAAAAGCAATAGCGTCTT 1379
||||||||| || ||||||||||||||||||||||||| |||||||||||| ||| ||||
Sbjct 1311 CAAAAACAAAATGATTATGATTGGTGCACATGTTTACTCTATGAAAAGCAACAGCTTCTT 1370
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52945440550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5