BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G26980.1 Length=1748 Score E Sequences producing significant alignments: (Bits) Value Ahg942284 jgi|Araly1|942284|scaffold_602828.1 1615 0.0 Ahg497246 jgi|Araly1|497246|fgenesh2_kg.88__2__AT3G05710.2 876 0.0 Ahg477864 jgi|Araly1|477864|fgenesh2_kg.3__565__AT3G05710.2 876 0.0 > Ahg942284 jgi|Araly1|942284|scaffold_602828.1 Length=1009 Score = 1615 bits (874), Expect = 0.0 Identities = 951/989 (96%), Gaps = 1/989 (0%) Strand=Plus/Plus Query 190 AAATTTT-GACGATCATGGCGACGAGGAATCGTACGTTGCTGTTTAGGAAGTACAGAAAC 248 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6 AAATTTTCGACGATCATGGCGACGAGGAATCGTACGTTGCTGTTTAGGAAGTACAGAAAC 65 Query 249 TCTCTGAGAAGCGTCAGAGCTCCATTGTCGTCATCTTCATTGACGGGAACACGATCCGGC 308 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 66 TCTCTGAGGAGCGTCAGAGCTCCATTGTCGTCATCTTCATTGACGGGAACACGATCCGGC 125 Query 309 GGCGTTGGTCCGGTGATCGAGATGGCGAGTACTTCGTTATTGAATCCGAATCGCTCTTAC 368 |||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||| Sbjct 126 GGCGTTGGTCCGGTTATCGAAATGGCGACTACTTCGTTATTGAATCCGAATCGCTCTTAT 185 Query 369 GCTCCTATTAGTACCGAAGATCCTGGAACTTCTAGTAAAGGTGCGATAACAGTGGGCTTA 428 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 186 ACTCCTGTTAGTACCGAAGATCCTGGAACTTCTAGTAAAGGTGCGATAACAGTGGGATTA 245 Query 429 CCACCAGCTTGGGTTGATGTCTCTGAGGAGATATCTGTGAATATACAGCGTGCAAGGACT 488 |||||||||||||||||||| |||||||||||||| ||||| |||||||| ||||||||| Sbjct 246 CCACCAGCTTGGGTTGATGTATCTGAGGAGATATCGGTGAACATACAGCGAGCAAGGACT 305 Query 489 AAAATGGCTGAGTTGGGAAAGGCTCATGCCAAGGCGTTAATGCCATCGTTTGGGGATGGT 548 |||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 306 AAAATGGCGGAGTTGGGAAAGGCTCATGCTAAGGCGTTAATGCCATCGTTTGGTGATGGT 365 Query 549 AAAGAAGATCAACATAATATTGAGTCTTTGACACAGGAGATAACTTTTCTATTGAAGAAG 608 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 366 AAAGAAGATCAACATAATATTGAGTCTTTGACGCAGGAGATAACTTTTCTATTGAAGAAG 425 Query 609 TCTGAGAAGCAACTTCAGAGGCTTTCTGCTTCAGGGCCTTCTGAAGATTCAAATGTTAGG 668 ||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||| Sbjct 426 TCTGAGAAGCAACTTCAGAGGCTTTCTGCGGCTGGGCCTTCTGAAGATTCGAATGTTAGG 485 Query 669 AAAAATGTGCAGCGGTCTCTTGCCACTGACCTCCAACTTCTTTCTATGGAGCTTCGCAAA 728 || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 486 AAGAATGTGCAGCGGTCTCTTGCCACTGACCTCCAACTTCTTTCTATGGAGCTCCGCAAA 545 Query 729 AAACAGTCAACATATTTGAAACGCTTGAGGCAGCAAAAAGAGGATGGGATGGATTTAGAG 788 ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| Sbjct 546 AAACAGTCAACATATTTGAAACGCTTGAGACAGCAAAAAGAGGATGGGGTGGATTTAGAG 605 Query 789 ATGAATCTGAGCAGAAACAGATATAGACCTGAAGAGGATGACTTTGGCGATATGTTAAAC 848 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 606 ATGAATCTGAGCAGAAACAGATATAGACCTGAAGAGGATGACTTTGACGATATGTTAAAC 665 Query 849 GAGCATCAGATGTCAAAGATAAAAAAGAGTGAAGAAGTATCTGTAGAGAGGGAGAAAGAG 908 |||||||||||||| |||||||||||||| || |||||||| |||||||||||||||||| Sbjct 666 GAGCATCAGATGTCCAAGATAAAAAAGAGCGAGGAAGTATCGGTAGAGAGGGAGAAAGAG 725 Query 909 ATACAACAGGTTGTAGAATCAGTAAACGATCTTGCTCAAATTATGAAGGATCTTTCTGCA 968 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 726 ATACAACAGGTTGTAGAATCAGTAAACGATCTTGCTCAAATCATGAAGGATCTTTCTGCA 785 Query 969 CTTGTGATAGATCAGGGTACAATAGTTGATCGGATAGACTATAATATCGAAAACGTCGCT 1028 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 786 CTTGTGATAGATCAGGGTACAATAGTTGATCGGATAGACTATAATATCGAAAACGTCGCT 845 Query 1029 ACTACTGTTGAAGATGGTCTCAAACAACTACAGAAGGCAGAGCGAACGCAGAGACATGGA 1088 ||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct 846 ACTACCGTTGAAGATGGCCTCAAACAACTGCAGAAGGCAGAGCGAACGCAGAGACATGGA 905 Query 1089 GGTATGGTGAAGTGCGCATCCGTGCTTGTCATCCTCTGTTTCATCATGCTGCTACTCTTA 1148 || ||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 906 GGGATGGTGAAGTGCGCATCTGTCCTTGTCATCCTCTGTTTCATCATGCTGCTACTCTTA 965 Query 1149 ATCCTCAAGGAAATATTCTTGTGATCGGA 1177 ||||| ||||||||||||||||||||||| Sbjct 966 ATCCTTAAGGAAATATTCTTGTGATCGGA 994 > Ahg497246 jgi|Araly1|497246|fgenesh2_kg.88__2__AT3G05710.2 Length=1283 Score = 876 bits (474), Expect = 0.0 Identities = 859/1037 (83%), Gaps = 57/1037 (5%) Strand=Plus/Plus Query 177 TTCTAGGGATTTCAAATTTTGACGAT-C-ATGGCGACGAGGAATCGTACGTTGCTGTTTA 234 |||||||| ||| | | ||||| | | | |||||||| |||||||||||| || |||||| Sbjct 194 TTCTAGGG-TTT-ATA-TTTGA-GCTGCTATGGCGACTAGGAATCGTACGCTGTTGTTTA 249 Query 235 GGAAGTACAGAAACTCTCTGAGAAGCG-TCAGAGCTCC-AT--TGTCGTCATC-T--TC- 286 |||||||||||| |||||| || |||| || | ||||| || |||||| || | || Sbjct 250 GGAAGTACAGAAGCTCTCTAAGGAGCGTTC-GTGCTCCAATGGGGTCGTCTTCGTCGTCG 308 Query 287 A--TTGACGG-G-A-AC-ACGAT--CC-G-G-------CGGCGTT-GGTCCGGTGATCGA 328 | | |||| | | || || | || | | |||| || || ||||||||||| Sbjct 309 ACGGTAACGGAGCACACTTCGTTGACCGGAGCTAAATCCGGC-TTAGGCCCGGTGATCGA 367 Query 329 GATGGCGAGTACTTCGT-TATTGAATCCGAATCGCTCTTACGCTCCTA-TTAGTACCGAA 386 ||||||||| || || | |||||||||||||||| ||||| ||||| | | |||||||| Sbjct 368 GATGGCGAGCACGTC-TCTATTGAATCCGAATCGGTCTTATGCTCC-AGTCAGTACCGAG 425 Query 387 GATCCTGG-AACTTCTAGTAAAGGTGCGATAACAGTGGGCTTACCACCAGCTTGGGTTGA 445 |||||||| || ||| |||| |||| | ||||||||||| |||||||||| |||| |||| Sbjct 426 GATCCTGGTAA-TTCGAGTAGAGGTACAATAACAGTGGGATTACCACCAGATTGGCTTGA 484 Query 446 TGTCTCTGAGGAGATATCTGTGAATATACAGCGTGCAAGGACTAAAATGGCTGAGTTGGG 505 ||| ||||||||||| || || | || || |||||||| || ||||||||||| ||||| Sbjct 485 TGTATCTGAGGAGATTTCAGTTTACATTCAACGTGCAAGAACCAAAATGGCTGAATTGGG 544 Query 506 AAAGGCTCATGCCAAGGCGTTAATGCCATCGTTTGGGGATGGTAAAGAAGATCAACAT-A 564 |||||||||||| || ||||| ||||| |||||||||||||||||||||||||||||| | Sbjct 545 AAAGGCTCATGCGAAAGCGTTGATGCCTTCGTTTGGGGATGGTAAAGAAGATCAACATCA 604 Query 565 ATATTGAGTCTTTGACACAGGAGATAACTTTTCTATTGAAGAAGTCTGAGAAGCAACTTC 624 | || |||||||||||||| ||||| || || ||||||||||| |||||||||||||||| Sbjct 605 A-ATCGAGTCTTTGACACAAGAGATCACCTTCCTATTGAAGAAATCTGAGAAGCAACTTC 663 Query 625 AGAGGCTTTCTGCTTCAGGGCCTTCTGAAGATTCAAATGTTAGGAAAAATGTGCAGCGGT 684 ||||||||||||| | || |||||||||||||||||||| || ||||| || ||||| | Sbjct 664 AGAGGCTTTCTGCAGCTGGACCTTCTGAAGATTCAAATGTCAGAAAAAACGTCCAGCGAT 723 Query 685 CTCTTGCCACTGACCTCCAACTTCTTTCTATGGAGCTTCGCAAAAAACAGTCAACATATT 744 ||||||| ||||| |||||| |||||||||||||| ||||| |||||||| ||||||| Sbjct 724 CTCTTGCTACTGATCTCCAAAACCTTTCTATGGAGCTACGCAAGAAACAGTCTACATATT 783 Query 745 TGAAACGCTTGAGGC-AGCAAAAAGAGGATGGGAT-GGATTTAGAGATGAATCTGAGCAG 802 ||||||| ||||| | | |||||||||||||| || |||| ||||||||||||||| | | Sbjct 784 TGAAACGTTTGAGACTA-CAAAAAGAGGATGG-ATCGGATATAGAGATGAATCTGAACGG 841 Query 803 AAACAGATATAGAC-CTGAAGAGGATGACTTTGGCGATATGTTAA--AC-GAGCATCAGA 858 || ||| |||| | | ||||| |||||||||| |||||| || | |||||||| | Sbjct 842 AAGCAGCTATA-ATGCAGAAGATGATGACTTTGATGATATGGTATTTAGTGAGCATCAAA 900 Query 859 T--GTCAAAGATAAAAAAGAGTGAAGAAGTATCTGTAGAGAGGGAGAAAGAGATACAACA 916 | | ||| ||||||||||||||| ||| |||| |||||||||||||||||||| ||||| Sbjct 901 TAAG-CAA-GATAAAAAAGAGTGAGGAAATATCAGTAGAGAGGGAGAAAGAGATTCAACA 958 Query 917 GGTTGTAGAATCAGTAAACGATCTTGCTCAAATTATGAAGGATCTTTCTGCACTTGTGAT 976 |||||| ||||| |||| ||| |||||||| || |||||||||||||| || |||||||| Sbjct 959 GGTTGTCGAATCCGTAAGCGAGCTTGCTCAGATCATGAAGGATCTTTCCGCGCTTGTGAT 1018 Query 977 AGATCAGGGTACAATAGTTGATCGGATAGACTATAATATCGAAAACGTCGCTACTACTGT 1036 ||| |||||||| |||||||||||||| |||||||||||| | ||||| |||| ||| || Sbjct 1019 AGACCAGGGTACGATAGTTGATCGGATTGACTATAATATCCAGAACGTTGCTAGTACCGT 1078 Query 1037 TGAAGATGGTCTCAAACAACTACAGAAGGCAGAGCGAACGCAGAGACATGGAGGTATGGT 1096 || |||||||||||||| || || ||||| || || || |||||||| ||||||||||| Sbjct 1079 CGACGATGGTCTCAAACAGCTGCAAAAGGCGGAACGTACACAGAGACAAGGAGGTATGGT 1138 Query 1097 GAAGTGCGCATCCGTGCTTGTCATCCTCTGTTTCATCATGCTGCTACTCTTAATCCTCAA 1156 || ||| ||||| || |||||||| ||||| |||||||||||| |||||||||||||||| Sbjct 1139 GATGTGTGCATCTGTTCTTGTCATTCTCTGCTTCATCATGCTGGTACTCTTAATCCTCAA 1198 Query 1157 GGAAATAT-TCTTGTGA 1172 ||| || | |||||||| Sbjct 1199 GGAGAT-TCTCTTGTGA 1214 > Ahg477864 jgi|Araly1|477864|fgenesh2_kg.3__565__AT3G05710.2 Length=1521 Score = 876 bits (474), Expect = 0.0 Identities = 860/1038 (83%), Gaps = 59/1038 (6%) Strand=Plus/Plus Query 177 TTCTAGGGATTTCAAATTTTGACGAT-C-ATGGCGACGAGGAATCGTACGTTGCTGTTTA 234 |||||||| ||| | | ||||| | | | |||||||| |||||||||||| || |||||| Sbjct 194 TTCTAGGG-TTT-ATA-TTTGA-GCTGCTATGGCGACTAGGAATCGTACGCTGTTGTTTA 249 Query 235 GGAAGTACAGAAACTCTCTGAGAAGCG-TCAGAGCTCC-AT--TGTCGTCATC-T--TC- 286 |||||||||||| |||||| || |||| || | ||||| || |||||| || | || Sbjct 250 GGAAGTACAGAAGCTCTCTAAGGAGCGTTC-GTGCTCCAATGGGGTCGTCTTCGTCGTCG 308 Query 287 A--TTGACGG-G-A-AC-ACGAT--CC-G-G-------CGGCGTT-GGTCCGGTGATCGA 328 | | |||| | | || || | || | | |||| || || ||||||||||| Sbjct 309 ACGGTAACGGAGCACACTTCGTTGACCGGAGCTAAATCCGGC-TTAGGCCCGGTGATCGA 367 Query 329 GATGGCGAGTACTTCGT-TATTGAATCCGAATCGCTCTTACGCTCCTA-TTAGTACCGAA 386 ||||||||| || || | |||||||||||||||| ||||| ||||| | | |||||||| Sbjct 368 GATGGCGAGCACGTC-TCTATTGAATCCGAATCGGTCTTATGCTCC-AGTCAGTACCGAG 425 Query 387 GATCCTGG-AACTTCTAGTAAAGGTGCGATAACAGTGGGCTTACCACCAG-CTTGGGTTG 444 |||||||| || ||| |||| |||| | ||||||||||| |||||||||| | ||||||| Sbjct 426 GATCCTGGTAA-TTCGAGTAGAGGTACAATAACAGTGGGATTACCACCAGAC-TGGGTTG 483 Query 445 ATGTCTCTGAGGAGATATCTGTGAATATACAGCGTGCAAGGACTAAAATGGCTGAGTTGG 504 |||| ||||||||||| || || | || || |||||||| || ||||||||||| |||| Sbjct 484 ATGTATCTGAGGAGATTTCAGTTTACATTCAACGTGCAAGAACCAAAATGGCTGAATTGG 543 Query 505 GAAAGGCTCATGCCAAGGCGTTAATGCCATCGTTTGGGGATGGTAAAGAAGATCAACAT- 563 ||||||||||||| || ||||| ||||| |||||||||||||||||||||||||||||| Sbjct 544 GAAAGGCTCATGCGAAAGCGTTGATGCCTTCGTTTGGGGATGGTAAAGAAGATCAACATC 603 Query 564 AATATTGAGTCTTTGACACAGGAGATAACTTTTCTATTGAAGAAGTCTGAGAAGCAACTT 623 || || |||||||||||||| ||||| || || ||||||||||| ||||||||||||||| Sbjct 604 AA-ATCGAGTCTTTGACACAAGAGATCACCTTCCTATTGAAGAAATCTGAGAAGCAACTT 662 Query 624 CAGAGGCTTTCTGCTTCAGGGCCTTCTGAAGATTCAAATGTTAGGAAAAATGTGCAGCGG 683 |||||||||||||| | || |||||||||||||||||||| || ||||| || ||||| Sbjct 663 CAGAGGCTTTCTGCAGCTGGACCTTCTGAAGATTCAAATGTCAGAAAAAACGTCCAGCGA 722 Query 684 TCTCTTGCCACTGACCTCCAACTTCTTTCTATGGAGCTTCGCAAAAAACAGTCAACATAT 743 |||||||| ||||| |||||| |||||||||||||| ||||| |||||||| |||||| Sbjct 723 TCTCTTGCTACTGATCTCCAAAACCTTTCTATGGAGCTACGCAAGAAACAGTCTACATAT 782 Query 744 TTGAAACGCTTGAGGC-AGCAAAAAGAGGATGGGAT-GGATTTAGAGATGAATCTGAGCA 801 |||||||| ||||| | | |||||||||||||| || |||| ||||||||||||||| | Sbjct 783 TTGAAACGTTTGAGACTA-CAAAAAGAGGATGG-ATCGGATATAGAGATGAATCTGAACG 840 Query 802 GAAACAGATATAGAC-CTGAAGAGGATGACTTTGGCGATATGTTAA--AC-GAGCATCAG 857 ||| ||| |||| | | ||||| |||||||||| |||||| || | |||||||| Sbjct 841 GAAGCAGCTATA-ATGCAGAAGATGATGACTTTGATGATATGGTATTTAGTGAGCATCAA 899 Query 858 AT--GTCAAAGATAAAAAAGAGTGAAGAAGTATCTGTAGAGAGGGAGAAAGAGATACAAC 915 || | ||| ||||||||||||||| ||| |||| |||||||||||||||||||| |||| Sbjct 900 ATAAG-CAA-GATAAAAAAGAGTGAGGAAATATCAGTAGAGAGGGAGAAAGAGATTCAAC 957 Query 916 AGGTTGTAGAATCAGTAAACGATCTTGCTCAAATTATGAAGGATCTTTCTGCACTTGTGA 975 ||||||| ||||| |||| ||| |||||||| || |||||||||||||| || ||||||| Sbjct 958 AGGTTGTCGAATCCGTAAGCGAGCTTGCTCAGATCATGAAGGATCTTTCCGCGCTTGTGA 1017 Query 976 TAGATCAGGGTACAATAGTTGATCGGATAGACTATAATATCGAAAACGTCGCTACTACTG 1035 |||| |||||||| |||||||||||||| |||||||||||| | ||||| |||| ||| | Sbjct 1018 TAGACCAGGGTACGATAGTTGATCGGATTGACTATAATATCCAGAACGTTGCTAGTACCG 1077 Query 1036 TTGAAGATGGTCTCAAACAACTACAGAAGGCAGAGCGAACGCAGAGACATGGAGGTATGG 1095 | || |||||||||||||| || || ||||| || || || |||||||| |||||||||| Sbjct 1078 TCGACGATGGTCTCAAACAGCTGCAAAAGGCGGAACGTACACAGAGACAAGGAGGTATGG 1137 Query 1096 TGAAGTGCGCATCCGTGCTTGTCATCCTCTGTTTCATCATGCTGCTACTCTTAATCCTCA 1155 ||| ||| ||||| || |||||||| ||||| |||||||||||| ||||||||||||||| Sbjct 1138 TGATGTGTGCATCTGTTCTTGTCATTCTCTGCTTCATCATGCTGGTACTCTTAATCCTCA 1197 Query 1156 AGGAAATAT-TCTTGTGA 1172 |||| || | |||||||| Sbjct 1198 AGGAGAT-TCTCTTGTGA 1214 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65591401890 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5