BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G26980.1
Length=1748
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942284 jgi|Araly1|942284|scaffold_602828.1 1615 0.0
Ahg497246 jgi|Araly1|497246|fgenesh2_kg.88__2__AT3G05710.2 876 0.0
Ahg477864 jgi|Araly1|477864|fgenesh2_kg.3__565__AT3G05710.2 876 0.0
> Ahg942284 jgi|Araly1|942284|scaffold_602828.1
Length=1009
Score = 1615 bits (874), Expect = 0.0
Identities = 951/989 (96%), Gaps = 1/989 (0%)
Strand=Plus/Plus
Query 190 AAATTTT-GACGATCATGGCGACGAGGAATCGTACGTTGCTGTTTAGGAAGTACAGAAAC 248
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6 AAATTTTCGACGATCATGGCGACGAGGAATCGTACGTTGCTGTTTAGGAAGTACAGAAAC 65
Query 249 TCTCTGAGAAGCGTCAGAGCTCCATTGTCGTCATCTTCATTGACGGGAACACGATCCGGC 308
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 66 TCTCTGAGGAGCGTCAGAGCTCCATTGTCGTCATCTTCATTGACGGGAACACGATCCGGC 125
Query 309 GGCGTTGGTCCGGTGATCGAGATGGCGAGTACTTCGTTATTGAATCCGAATCGCTCTTAC 368
|||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 126 GGCGTTGGTCCGGTTATCGAAATGGCGACTACTTCGTTATTGAATCCGAATCGCTCTTAT 185
Query 369 GCTCCTATTAGTACCGAAGATCCTGGAACTTCTAGTAAAGGTGCGATAACAGTGGGCTTA 428
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 186 ACTCCTGTTAGTACCGAAGATCCTGGAACTTCTAGTAAAGGTGCGATAACAGTGGGATTA 245
Query 429 CCACCAGCTTGGGTTGATGTCTCTGAGGAGATATCTGTGAATATACAGCGTGCAAGGACT 488
|||||||||||||||||||| |||||||||||||| ||||| |||||||| |||||||||
Sbjct 246 CCACCAGCTTGGGTTGATGTATCTGAGGAGATATCGGTGAACATACAGCGAGCAAGGACT 305
Query 489 AAAATGGCTGAGTTGGGAAAGGCTCATGCCAAGGCGTTAATGCCATCGTTTGGGGATGGT 548
|||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 306 AAAATGGCGGAGTTGGGAAAGGCTCATGCTAAGGCGTTAATGCCATCGTTTGGTGATGGT 365
Query 549 AAAGAAGATCAACATAATATTGAGTCTTTGACACAGGAGATAACTTTTCTATTGAAGAAG 608
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 366 AAAGAAGATCAACATAATATTGAGTCTTTGACGCAGGAGATAACTTTTCTATTGAAGAAG 425
Query 609 TCTGAGAAGCAACTTCAGAGGCTTTCTGCTTCAGGGCCTTCTGAAGATTCAAATGTTAGG 668
||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||
Sbjct 426 TCTGAGAAGCAACTTCAGAGGCTTTCTGCGGCTGGGCCTTCTGAAGATTCGAATGTTAGG 485
Query 669 AAAAATGTGCAGCGGTCTCTTGCCACTGACCTCCAACTTCTTTCTATGGAGCTTCGCAAA 728
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 486 AAGAATGTGCAGCGGTCTCTTGCCACTGACCTCCAACTTCTTTCTATGGAGCTCCGCAAA 545
Query 729 AAACAGTCAACATATTTGAAACGCTTGAGGCAGCAAAAAGAGGATGGGATGGATTTAGAG 788
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 546 AAACAGTCAACATATTTGAAACGCTTGAGACAGCAAAAAGAGGATGGGGTGGATTTAGAG 605
Query 789 ATGAATCTGAGCAGAAACAGATATAGACCTGAAGAGGATGACTTTGGCGATATGTTAAAC 848
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 606 ATGAATCTGAGCAGAAACAGATATAGACCTGAAGAGGATGACTTTGACGATATGTTAAAC 665
Query 849 GAGCATCAGATGTCAAAGATAAAAAAGAGTGAAGAAGTATCTGTAGAGAGGGAGAAAGAG 908
|||||||||||||| |||||||||||||| || |||||||| ||||||||||||||||||
Sbjct 666 GAGCATCAGATGTCCAAGATAAAAAAGAGCGAGGAAGTATCGGTAGAGAGGGAGAAAGAG 725
Query 909 ATACAACAGGTTGTAGAATCAGTAAACGATCTTGCTCAAATTATGAAGGATCTTTCTGCA 968
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 726 ATACAACAGGTTGTAGAATCAGTAAACGATCTTGCTCAAATCATGAAGGATCTTTCTGCA 785
Query 969 CTTGTGATAGATCAGGGTACAATAGTTGATCGGATAGACTATAATATCGAAAACGTCGCT 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 786 CTTGTGATAGATCAGGGTACAATAGTTGATCGGATAGACTATAATATCGAAAACGTCGCT 845
Query 1029 ACTACTGTTGAAGATGGTCTCAAACAACTACAGAAGGCAGAGCGAACGCAGAGACATGGA 1088
||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 846 ACTACCGTTGAAGATGGCCTCAAACAACTGCAGAAGGCAGAGCGAACGCAGAGACATGGA 905
Query 1089 GGTATGGTGAAGTGCGCATCCGTGCTTGTCATCCTCTGTTTCATCATGCTGCTACTCTTA 1148
|| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 906 GGGATGGTGAAGTGCGCATCTGTCCTTGTCATCCTCTGTTTCATCATGCTGCTACTCTTA 965
Query 1149 ATCCTCAAGGAAATATTCTTGTGATCGGA 1177
||||| |||||||||||||||||||||||
Sbjct 966 ATCCTTAAGGAAATATTCTTGTGATCGGA 994
> Ahg497246 jgi|Araly1|497246|fgenesh2_kg.88__2__AT3G05710.2
Length=1283
Score = 876 bits (474), Expect = 0.0
Identities = 859/1037 (83%), Gaps = 57/1037 (5%)
Strand=Plus/Plus
Query 177 TTCTAGGGATTTCAAATTTTGACGAT-C-ATGGCGACGAGGAATCGTACGTTGCTGTTTA 234
|||||||| ||| | | ||||| | | | |||||||| |||||||||||| || ||||||
Sbjct 194 TTCTAGGG-TTT-ATA-TTTGA-GCTGCTATGGCGACTAGGAATCGTACGCTGTTGTTTA 249
Query 235 GGAAGTACAGAAACTCTCTGAGAAGCG-TCAGAGCTCC-AT--TGTCGTCATC-T--TC- 286
|||||||||||| |||||| || |||| || | ||||| || |||||| || | ||
Sbjct 250 GGAAGTACAGAAGCTCTCTAAGGAGCGTTC-GTGCTCCAATGGGGTCGTCTTCGTCGTCG 308
Query 287 A--TTGACGG-G-A-AC-ACGAT--CC-G-G-------CGGCGTT-GGTCCGGTGATCGA 328
| | |||| | | || || | || | | |||| || || |||||||||||
Sbjct 309 ACGGTAACGGAGCACACTTCGTTGACCGGAGCTAAATCCGGC-TTAGGCCCGGTGATCGA 367
Query 329 GATGGCGAGTACTTCGT-TATTGAATCCGAATCGCTCTTACGCTCCTA-TTAGTACCGAA 386
||||||||| || || | |||||||||||||||| ||||| ||||| | | ||||||||
Sbjct 368 GATGGCGAGCACGTC-TCTATTGAATCCGAATCGGTCTTATGCTCC-AGTCAGTACCGAG 425
Query 387 GATCCTGG-AACTTCTAGTAAAGGTGCGATAACAGTGGGCTTACCACCAGCTTGGGTTGA 445
|||||||| || ||| |||| |||| | ||||||||||| |||||||||| |||| ||||
Sbjct 426 GATCCTGGTAA-TTCGAGTAGAGGTACAATAACAGTGGGATTACCACCAGATTGGCTTGA 484
Query 446 TGTCTCTGAGGAGATATCTGTGAATATACAGCGTGCAAGGACTAAAATGGCTGAGTTGGG 505
||| ||||||||||| || || | || || |||||||| || ||||||||||| |||||
Sbjct 485 TGTATCTGAGGAGATTTCAGTTTACATTCAACGTGCAAGAACCAAAATGGCTGAATTGGG 544
Query 506 AAAGGCTCATGCCAAGGCGTTAATGCCATCGTTTGGGGATGGTAAAGAAGATCAACAT-A 564
|||||||||||| || ||||| ||||| |||||||||||||||||||||||||||||| |
Sbjct 545 AAAGGCTCATGCGAAAGCGTTGATGCCTTCGTTTGGGGATGGTAAAGAAGATCAACATCA 604
Query 565 ATATTGAGTCTTTGACACAGGAGATAACTTTTCTATTGAAGAAGTCTGAGAAGCAACTTC 624
| || |||||||||||||| ||||| || || ||||||||||| ||||||||||||||||
Sbjct 605 A-ATCGAGTCTTTGACACAAGAGATCACCTTCCTATTGAAGAAATCTGAGAAGCAACTTC 663
Query 625 AGAGGCTTTCTGCTTCAGGGCCTTCTGAAGATTCAAATGTTAGGAAAAATGTGCAGCGGT 684
||||||||||||| | || |||||||||||||||||||| || ||||| || ||||| |
Sbjct 664 AGAGGCTTTCTGCAGCTGGACCTTCTGAAGATTCAAATGTCAGAAAAAACGTCCAGCGAT 723
Query 685 CTCTTGCCACTGACCTCCAACTTCTTTCTATGGAGCTTCGCAAAAAACAGTCAACATATT 744
||||||| ||||| |||||| |||||||||||||| ||||| |||||||| |||||||
Sbjct 724 CTCTTGCTACTGATCTCCAAAACCTTTCTATGGAGCTACGCAAGAAACAGTCTACATATT 783
Query 745 TGAAACGCTTGAGGC-AGCAAAAAGAGGATGGGAT-GGATTTAGAGATGAATCTGAGCAG 802
||||||| ||||| | | |||||||||||||| || |||| ||||||||||||||| | |
Sbjct 784 TGAAACGTTTGAGACTA-CAAAAAGAGGATGG-ATCGGATATAGAGATGAATCTGAACGG 841
Query 803 AAACAGATATAGAC-CTGAAGAGGATGACTTTGGCGATATGTTAA--AC-GAGCATCAGA 858
|| ||| |||| | | ||||| |||||||||| |||||| || | |||||||| |
Sbjct 842 AAGCAGCTATA-ATGCAGAAGATGATGACTTTGATGATATGGTATTTAGTGAGCATCAAA 900
Query 859 T--GTCAAAGATAAAAAAGAGTGAAGAAGTATCTGTAGAGAGGGAGAAAGAGATACAACA 916
| | ||| ||||||||||||||| ||| |||| |||||||||||||||||||| |||||
Sbjct 901 TAAG-CAA-GATAAAAAAGAGTGAGGAAATATCAGTAGAGAGGGAGAAAGAGATTCAACA 958
Query 917 GGTTGTAGAATCAGTAAACGATCTTGCTCAAATTATGAAGGATCTTTCTGCACTTGTGAT 976
|||||| ||||| |||| ||| |||||||| || |||||||||||||| || ||||||||
Sbjct 959 GGTTGTCGAATCCGTAAGCGAGCTTGCTCAGATCATGAAGGATCTTTCCGCGCTTGTGAT 1018
Query 977 AGATCAGGGTACAATAGTTGATCGGATAGACTATAATATCGAAAACGTCGCTACTACTGT 1036
||| |||||||| |||||||||||||| |||||||||||| | ||||| |||| ||| ||
Sbjct 1019 AGACCAGGGTACGATAGTTGATCGGATTGACTATAATATCCAGAACGTTGCTAGTACCGT 1078
Query 1037 TGAAGATGGTCTCAAACAACTACAGAAGGCAGAGCGAACGCAGAGACATGGAGGTATGGT 1096
|| |||||||||||||| || || ||||| || || || |||||||| |||||||||||
Sbjct 1079 CGACGATGGTCTCAAACAGCTGCAAAAGGCGGAACGTACACAGAGACAAGGAGGTATGGT 1138
Query 1097 GAAGTGCGCATCCGTGCTTGTCATCCTCTGTTTCATCATGCTGCTACTCTTAATCCTCAA 1156
|| ||| ||||| || |||||||| ||||| |||||||||||| ||||||||||||||||
Sbjct 1139 GATGTGTGCATCTGTTCTTGTCATTCTCTGCTTCATCATGCTGGTACTCTTAATCCTCAA 1198
Query 1157 GGAAATAT-TCTTGTGA 1172
||| || | ||||||||
Sbjct 1199 GGAGAT-TCTCTTGTGA 1214
> Ahg477864 jgi|Araly1|477864|fgenesh2_kg.3__565__AT3G05710.2
Length=1521
Score = 876 bits (474), Expect = 0.0
Identities = 860/1038 (83%), Gaps = 59/1038 (6%)
Strand=Plus/Plus
Query 177 TTCTAGGGATTTCAAATTTTGACGAT-C-ATGGCGACGAGGAATCGTACGTTGCTGTTTA 234
|||||||| ||| | | ||||| | | | |||||||| |||||||||||| || ||||||
Sbjct 194 TTCTAGGG-TTT-ATA-TTTGA-GCTGCTATGGCGACTAGGAATCGTACGCTGTTGTTTA 249
Query 235 GGAAGTACAGAAACTCTCTGAGAAGCG-TCAGAGCTCC-AT--TGTCGTCATC-T--TC- 286
|||||||||||| |||||| || |||| || | ||||| || |||||| || | ||
Sbjct 250 GGAAGTACAGAAGCTCTCTAAGGAGCGTTC-GTGCTCCAATGGGGTCGTCTTCGTCGTCG 308
Query 287 A--TTGACGG-G-A-AC-ACGAT--CC-G-G-------CGGCGTT-GGTCCGGTGATCGA 328
| | |||| | | || || | || | | |||| || || |||||||||||
Sbjct 309 ACGGTAACGGAGCACACTTCGTTGACCGGAGCTAAATCCGGC-TTAGGCCCGGTGATCGA 367
Query 329 GATGGCGAGTACTTCGT-TATTGAATCCGAATCGCTCTTACGCTCCTA-TTAGTACCGAA 386
||||||||| || || | |||||||||||||||| ||||| ||||| | | ||||||||
Sbjct 368 GATGGCGAGCACGTC-TCTATTGAATCCGAATCGGTCTTATGCTCC-AGTCAGTACCGAG 425
Query 387 GATCCTGG-AACTTCTAGTAAAGGTGCGATAACAGTGGGCTTACCACCAG-CTTGGGTTG 444
|||||||| || ||| |||| |||| | ||||||||||| |||||||||| | |||||||
Sbjct 426 GATCCTGGTAA-TTCGAGTAGAGGTACAATAACAGTGGGATTACCACCAGAC-TGGGTTG 483
Query 445 ATGTCTCTGAGGAGATATCTGTGAATATACAGCGTGCAAGGACTAAAATGGCTGAGTTGG 504
|||| ||||||||||| || || | || || |||||||| || ||||||||||| ||||
Sbjct 484 ATGTATCTGAGGAGATTTCAGTTTACATTCAACGTGCAAGAACCAAAATGGCTGAATTGG 543
Query 505 GAAAGGCTCATGCCAAGGCGTTAATGCCATCGTTTGGGGATGGTAAAGAAGATCAACAT- 563
||||||||||||| || ||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 544 GAAAGGCTCATGCGAAAGCGTTGATGCCTTCGTTTGGGGATGGTAAAGAAGATCAACATC 603
Query 564 AATATTGAGTCTTTGACACAGGAGATAACTTTTCTATTGAAGAAGTCTGAGAAGCAACTT 623
|| || |||||||||||||| ||||| || || ||||||||||| |||||||||||||||
Sbjct 604 AA-ATCGAGTCTTTGACACAAGAGATCACCTTCCTATTGAAGAAATCTGAGAAGCAACTT 662
Query 624 CAGAGGCTTTCTGCTTCAGGGCCTTCTGAAGATTCAAATGTTAGGAAAAATGTGCAGCGG 683
|||||||||||||| | || |||||||||||||||||||| || ||||| || |||||
Sbjct 663 CAGAGGCTTTCTGCAGCTGGACCTTCTGAAGATTCAAATGTCAGAAAAAACGTCCAGCGA 722
Query 684 TCTCTTGCCACTGACCTCCAACTTCTTTCTATGGAGCTTCGCAAAAAACAGTCAACATAT 743
|||||||| ||||| |||||| |||||||||||||| ||||| |||||||| ||||||
Sbjct 723 TCTCTTGCTACTGATCTCCAAAACCTTTCTATGGAGCTACGCAAGAAACAGTCTACATAT 782
Query 744 TTGAAACGCTTGAGGC-AGCAAAAAGAGGATGGGAT-GGATTTAGAGATGAATCTGAGCA 801
|||||||| ||||| | | |||||||||||||| || |||| ||||||||||||||| |
Sbjct 783 TTGAAACGTTTGAGACTA-CAAAAAGAGGATGG-ATCGGATATAGAGATGAATCTGAACG 840
Query 802 GAAACAGATATAGAC-CTGAAGAGGATGACTTTGGCGATATGTTAA--AC-GAGCATCAG 857
||| ||| |||| | | ||||| |||||||||| |||||| || | ||||||||
Sbjct 841 GAAGCAGCTATA-ATGCAGAAGATGATGACTTTGATGATATGGTATTTAGTGAGCATCAA 899
Query 858 AT--GTCAAAGATAAAAAAGAGTGAAGAAGTATCTGTAGAGAGGGAGAAAGAGATACAAC 915
|| | ||| ||||||||||||||| ||| |||| |||||||||||||||||||| ||||
Sbjct 900 ATAAG-CAA-GATAAAAAAGAGTGAGGAAATATCAGTAGAGAGGGAGAAAGAGATTCAAC 957
Query 916 AGGTTGTAGAATCAGTAAACGATCTTGCTCAAATTATGAAGGATCTTTCTGCACTTGTGA 975
||||||| ||||| |||| ||| |||||||| || |||||||||||||| || |||||||
Sbjct 958 AGGTTGTCGAATCCGTAAGCGAGCTTGCTCAGATCATGAAGGATCTTTCCGCGCTTGTGA 1017
Query 976 TAGATCAGGGTACAATAGTTGATCGGATAGACTATAATATCGAAAACGTCGCTACTACTG 1035
|||| |||||||| |||||||||||||| |||||||||||| | ||||| |||| ||| |
Sbjct 1018 TAGACCAGGGTACGATAGTTGATCGGATTGACTATAATATCCAGAACGTTGCTAGTACCG 1077
Query 1036 TTGAAGATGGTCTCAAACAACTACAGAAGGCAGAGCGAACGCAGAGACATGGAGGTATGG 1095
| || |||||||||||||| || || ||||| || || || |||||||| ||||||||||
Sbjct 1078 TCGACGATGGTCTCAAACAGCTGCAAAAGGCGGAACGTACACAGAGACAAGGAGGTATGG 1137
Query 1096 TGAAGTGCGCATCCGTGCTTGTCATCCTCTGTTTCATCATGCTGCTACTCTTAATCCTCA 1155
||| ||| ||||| || |||||||| ||||| |||||||||||| |||||||||||||||
Sbjct 1138 TGATGTGTGCATCTGTTCTTGTCATTCTCTGCTTCATCATGCTGGTACTCTTAATCCTCA 1197
Query 1156 AGGAAATAT-TCTTGTGA 1172
|||| || | ||||||||
Sbjct 1198 AGGAGAT-TCTCTTGTGA 1214
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65591401890
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5