BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G26990.1
Length=1244
Score E
Sequences producing significant alignments: (Bits) Value
Ahg894629 jgi|Araly1|894629|Al_scaffold_0006_2625 937 0.0
> Ahg894629 jgi|Araly1|894629|Al_scaffold_0006_2625
Length=711
Score = 937 bits (507), Expect = 0.0
Identities = 567/596 (95%), Gaps = 4/596 (1%)
Strand=Plus/Plus
Query 370 GACAATTTCTTGGGGTTTGAGGAGATAGAAGGAGAAGATGACTTCAGGGAGGAGTATGCT 429
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 118 GACAATTTCCTGGGGTTTGAGGAGATAGAAGGAGAAGATGACTTCAGAGAGGAGTATGCT 177
Query 430 TGCCCGTTCTGTTCAGACTATTTTGATATCGTCTCTCTATGCTGTCACATTGATGAAGAT 489
|| |||||||| || ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 178 TGTCCGTTCTGCTCGGACTATTTTGATATCGTGTCTCTATGCTGCCACATTGATGAAGAT 237
Query 490 CATCCTATGGATGCAAAAAATGGGGTATGTCCCATTTGTGCGGTGAAAGTGAGCTCTGAT 549
|||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 238 CATCCTGTGGACGCAAAAAATGGGGTATGTCCCGTTTGTGCGGTGAAAGTGAGCTCTGAT 297
Query 550 ATGATTGCTCATATAACCCTACAACATGCAAATATGTTCAAGGTGACGCGGAAAAGGAAA 609
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 298 ATGATTGCTCATATAACCCTACAACATGCAAATATGTTCAAGGTGACGCGAAAAAGGAAA 357
Query 610 TCAAGAAGAGGCGGGGCTCAATCCATGCTATCGATCTTGAAGAGAGAGTTTCCTGATGGA 669
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TCAAGACGAGGCGGGGCTCAATCCATGCTATCGATCTTGAAGAGAGAGTTTCCTGATGGA 417
Query 670 AATTTTCAGAGCCTATTTGAAGGAACATCACGTGCTGTATCCTCTTCTTCTGCCAGTATA 729
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 418 AATTTTCAGAGTCTATTTGAAGGAACATCGCGTGCTGTATCCTCTTCTTCTGCCAGTATA 477
Query 730 GCTGCTGATCCTTTACTGTCTTCATTCATTTCACCAATGGCTGATGACTTTTTCATTTCT 789
|||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 478 GCTGCTGATCCTTTGCTGTCTTCGTTCATTTCACCAATGACTGATGACTTTTTCATTTCT 537
Query 790 GAGTCAAGTCTATGTGCAGACACAAGTTCTGCCAAGAAAACATTGAATCAGAGT-TTG-C 847
|||||||||||||||||||| |||||||||||||||||||||||| | | ||| ||| |
Sbjct 538 GAGTCAAGTCTATGTGCAGAAACAAGTTCTGCCAAGAAAACATTGCCTGAAAGTCTTGAC 597
Query 848 CTGAAAGGAATGTTGAGAAGCAGTCTCTTTCAGCAGAGGATCACAGAGAAAAGTTGAAAC 907
| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 C--ACAGGAATGTTGAAAAGCAGTCTCTTTCAGCAGAGGATCACAGAGAAAAGTTGAAAC 655
Query 908 AGAGCGAGTTCGTTCAAGGGATATTGAGCTCTATGATTCTTGAAGACGGCTTATAA 963
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 656 AGAGCGAGTTCGTTCAAGGGATTTTGAGCTCTATGATTCTTGAAGACGGCTTATAA 711
Score = 135 bits (73), Expect = 6e-31
Identities = 75/76 (99%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 295 ATGGATTCTGATTCTTGGAGTGATCGTCTCGCATCGGCTTCAAGAAGATATCAGCTCGAT 354
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGATTCTGATTCTTGGAGTGATCGTCTCGCATCGGCTTCAAGGAGATATCAGCTCGAT 60
Query 355 TTCTTGTCTCGATCTG 370
||||||||||||||||
Sbjct 61 TTCTTGTCTCGATCTG 76
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46471835823
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5