BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G27000.1 Length=3194 Score E Sequences producing significant alignments: (Bits) Value Ahg489530 jgi|Araly1|489530|fgenesh2_kg.6__2664__AT5G27000.1 4857 0.0 > Ahg489530 jgi|Araly1|489530|fgenesh2_kg.6__2664__AT5G27000.1 Length=3162 Score = 4857 bits (2630), Expect = 0.0 Identities = 2998/3174 (94%), Gaps = 32/3174 (1%) Strand=Plus/Plus Query 41 ATCTCAGATGGCGACGACATCGGAGATCAACAATGATCTTTCGTTTTCCGTTGTATCGAT 100 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATCGCAGATGGCGACGACATCGGAGATCAACAATGATCTTTCGTTTTCCGTTGTATCGAT 60 Query 101 TGTTGAAGATGTTCTTCAACAACATAGTAGCCGATCAAGCGACGTCGGTTTGGTTTCCAG 160 ||| |||||||||||||||||||||||||||||||||||||| || ||||| |||||| | Sbjct 61 TGTCGAAGATGTTCTTCAACAACATAGTAGCCGATCAAGCGATGTTGGTTTCGTTTCCCG 120 Query 161 AAAAGTTGAAGAATCTTCTTTGAGAAGATATGAAGCTGCTGGGTGGCTTAGAGATATGAT 220 |||||||| ||||||||||| |||||||||||||||| ||||||||| ||||||||| | Sbjct 121 GAAAGTTGATGAATCTTCTTTAAGAAGATATGAAGCTGTTGGGTGGCTAAGAGATATGGT 180 Query 221 CGGAGTTTCCAATGGTAAAGATTTTCCAGG-AGAGCCTTCTGAAGAAGAGTTTAGGCTTG 279 ||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||| Sbjct 181 CGGAGTTTCCAATGGTAAAGATTTTCC-GGCTGAGCCTTCTGAAGAAGATTTTAGGCTTG 239 Query 280 GATTGCGAAGTGGGATCGTTCTTTGTAATGTTCTTAACAAAGTTAATCCTGGATCAGTCT 339 |||||||||| || ||||| ||||| |||||||||||||||||||||||||||||||| | Sbjct 240 GATTGCGAAGCGGAATCGTACTTTGCAATGTTCTTAACAAAGTTAATCCTGGATCAGTGT 299 Query 340 CAAAGGTCGTTGAAGCGCCGGACGATGTTGCAGATGGAGCTGCACTTTCAGCTTTTCAAT 399 ||||||| |||||||| ||||| ||||||| ||||||||||||||| |||||||| |||| Sbjct 300 CAAAGGTTGTTGAAGCACCGGATGATGTTGTAGATGGAGCTGCACTCTCAGCTTTCCAAT 359 Query 400 ACTTTGAAAACATAAGGAATTTTTTAGTAGCTATAGAGGAAATGGGGTTGCCATCATTTG 459 ||||||||||||| || || ||||||||||| |||||||||||||||||||||||||||| Sbjct 360 ACTTTGAAAACATCAGAAACTTTTTAGTAGCCATAGAGGAAATGGGGTTGCCATCATTTG 419 Query 460 AAGCTTCAGATATGGAGAAGGGAGGCAAGTCTATAAGGATAGTGAACTGCATTCTTGCCC 519 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 AAGCTTCAGATATGGAGAAGGGAGGCAAGTCTATAAGGATAGTGAACTGCATTCTTGCCC 479 Query 520 TTAAGTCTTATAGTGAGTGGAAACTGAAAGGTGAAAATGGTCCATGGAGGTATGGATCTA 579 |||| ||||| || |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 480 TTAAATCTTACAGCGAGTGGAAACTGAAAGGTGAAAATGGTCCATGGAGGTATGGATCCA 539 Query 580 ACATGAAACATAACTTTGGATCGAGAAAACTATTTCTGAGAAAAAGTTCAGAGCCATTTG 639 |||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||| Sbjct 540 ACATGAAAAATAACTTTGGATCGAGAAAACCATTTCTGAGAAAAAGTTCAGAACCATTTG 599 Query 640 TTAGTTCTATATCGAGAACTCAGTCGACGGATATGTTATCAACTGATCA-ACCTCTGAGT 698 | ||||||||||| |||||||| || |||||||| | |||||||||| | |||| ||||| Sbjct 600 TGAGTTCTATATCAAGAACTCACTCTACGGATATCTCATCAACTGAT-ACACCTATGAGT 658 Query 699 TCTGATGGAGATTCTAGATCCATAAATGGGCTTGTTCGGTCATTCATTGCAGACAGAAAG 758 || ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| Sbjct 659 TCCGATGGAGATTCTAGATCCATAAATGGGCTTGTTCGCTCATTCATTGCAGACAAAAAG 718 Query 759 CATGAAGATATTCCAAATGTTGTAGAGTCTGTGTTGAACAAAGTTATGGAAGAAGTCCAG 818 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 719 CATGAAGATATTCCAAATGTTGTAGAGTCTGTGTTGAACAAAGTTATGGAAGAAGTCCAG 778 Query 819 CAGCGTTTATCAATCCACAATGAAATGATGAAATCAAGTTCAAAGCCTATTCCAGAAGAT 878 || ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 779 CAACGTTTATCAATCCACAACGAAATGATGAAATCAAGATCAAAGCCTATTCCAGAAGAT 838 Query 879 GATTCATCCTGTGAGACAGTGGTCCGGTCTCAGCTGTGTGATGCAAGACAACATGAGGAA 938 |||||||| ||||||||| |||| ||||||||||| |||||||||||||||||||||||| Sbjct 839 GATTCATCATGTGAGACAATGGTTCGGTCTCAGCTATGTGATGCAAGACAACATGAGGAA 898 Query 939 GCAGAAGAAAATAGTCCGCCCCAGGTTGTGGaaaaaaaGTTTCAAAGGACAAATTTTGAA 998 |||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||| Sbjct 899 TCAGAAGAAAACAGTCCGCCCCAGGTTGTAGAAAAAAGGTTTCAAAGGACAAATTTTGAA 958 Query 999 CATCACGAAGAACAAAAGATTCTTCTGAATCAACAAAAACACATCCAGGAGTTGAAGCAA 1058 ||| ||||||||||| |||||||| |||| ||||||||||||||||| ||||| |||||| Sbjct 959 CATTACGAAGAACAAGAGATTCTTTTGAACCAACAAAAACACATCCAAGAGTTAAAGCAA 1018 Query 1059 ACCTTATACACTACAAAAGCAGGAATGAAATTGCTGCAGATGAAGTATCAAGAAGATTTC 1118 |||||| ||||||||||||| |||||| |||| ||||||||||||||||||||||||||| Sbjct 1019 ACCTTAAACACTACAAAAGCGGGAATGCAATTACTGCAGATGAAGTATCAAGAAGATTTC 1078 Query 1119 TTTCATCTAGGCAAGCATTTAAATGGTTTAGCTTATGCGGCTACGGGATACAAAAGGGTT 1178 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1079 TTTCATCTAGGCAAGCATTTAAATGGTTTAGCTTATGCGGCTACGGGATACAAAAGGGTT 1138 Query 1179 CTTGAAGAAAACCGTAAACTGTACAATCTAGTGCAGGATCTAAAAGGAAACATACGGGTG 1238 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1139 CTTGAAGAAAACCGCAAACTGTACAATCTAGTGCAGGATCTAAAAGGAAACATACGGGTG 1198 Query 1239 TACTGTCGAGTTAGGCCGTTCTTGCCTGGGCAA-GAAAGTGGTGGTTTGAGTGCCGTGGA 1297 || ||||| |||||||| ||||||||||||||| ||| |||||||||||||||||| | Sbjct 1199 TATTGTCGGGTTAGGCCATTCTTGCCTGGGCAATCAAA-TGGTGGTTTGAGTGCCGTAG- 1256 Query 1298 AG-ACATAGACGAAGGGACCATCACGATCAGAGTTCCATCAAAGTATGGGAAAGCAGGAC 1356 || |||||||||||||||||||||| |||||||| ||||||||||||||||||||||| | Sbjct 1257 AGCACATAGACGAAGGGACCATCACCATCAGAGTACCATCAAAGTATGGGAAAGCAGGGC 1316 Query 1357 AAAAACCATTTATGTTCAACAAAGTCTTTGGTCCTTCTGCAACACAAGAGGAAGTGTTTT 1416 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1317 AAAAACCATTTATGTTCAATAAAGTCTTTGGTCCTTCTGCAACACAAGAGGAAGTGTTTT 1376 Query 1417 CAGACATGCAGCCTTTGGTACGGTCGGTTCTCGATGGCTACAATGTCTGCATCTTCGCTT 1476 ||||||||| ||||| ||||| |||||||| |||||||||||||||||||||||||||| Sbjct 1377 TAGACATGCAACCTTTAGTACGCTCGGTTCTTGATGGCTACAATGTCTGCATCTTCGCTT 1436 Query 1477 ATGGCCAAACCGGGTCAGGGAAAACTTTTACCATGACAGGGCCTAAGGAACTGACTGAAG 1536 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1437 ATGGCCAAACTGGGTCAGGGAAAACTTTTACCATGACAGGGCCTAAGGAACTGACTGAAG 1496 Query 1537 AGAGCCTAGGTGTGAACTACAGGGCACTGGCAGATCTGTTTCTTCTATCAAATCAAAGAA 1596 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1497 AGAGCCTAGGTGTGAACTACAGGGCACTGGCAGATCTGTTTCTTCTATCAAATCAAAGAA 1556 Query 1597 AAGACACGACCAGCTACGAAATCTCAGTTCAGATGTTGGAAATTTACAACGAGCAAGTCA 1656 |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1557 AAGACACGACCAACTACGAAATCTCAGTTCAGATGCTGGAAATTTACAACGAGCAAGTCA 1616 Query 1657 GAGATCTACTTGCCCA-AGATGGCCAGACTAAAAGGTTAGAGATCAGAAACAACTCTCAC 1715 |||||||||||| ||| |||||||||||||||||| |||||||||||||| ||||||||| Sbjct 1617 GAGATCTACTTG-CCACAGATGGCCAGACTAAAAGATTAGAGATCAGAAATAACTCTCAC 1675 Query 1716 AATGGAATCAATGTACCGGAAGCAAGTCTAGTGCCTGTCTCATCGACGGATGACGTTATA 1775 |||||||| ||||| |||| ||||||||||| |||||||||||||||||||||| ||||| Sbjct 1676 AATGGAATTAATGTTCCGGGAGCAAGTCTAGAGCCTGTCTCATCGACGGATGACATTATA 1735 Query 1776 CAGCTAATGGATTTGGGACACATGAATCGTGCAGTGAGCTCTACAGCCATGAATGACAGA 1835 ||||| ||||| ||||||| ||||| |||||||||||||||||||| |||||||||||| Sbjct 1736 CAGCTGATGGAACTGGGACAAATGAACCGTGCAGTGAGCTCTACAGCTATGAATGACAGA 1795 Query 1836 AGTAGTCGATCTCACAGTTGTGTAACTGTTCATGTTCAAGGCAGAGACCTCACATCTGGC 1895 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1796 AGTAGTCGATCTCACAGTTGTGTAACTGTTCATGTTCAAGGCAGAGACCTCACATCTGGG 1855 Query 1896 TCTATCCTCCATGGTTCTATGCATCTGGTTGATCTTGCAGGAAGCGAGAGAGTGGACAAG 1955 | ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1856 GCCATCCTTCATGGTTCTATGCATCTAGTTGATCTTGCAGGAAGCGAGAGAGTGGACAAG 1915 Query 1956 TCTGAGGTGACTGGAGACAGACTGAAGGAGGCTCAACACATCAACAAGTCCCTCTCGGCT 2015 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1916 TCTGAGGTGACTGGAGACAGACTGAAGGAGGCTCAGCACATCAACAAGTCCCTCTCGGCT 1975 Query 2016 CTTGGAGATGTCATCTCCTCGCTTTCCCAGAAGACTTCTCATGTGCCTTACAGAAACAGT 2075 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1976 CTTGGAGATGTCATCTCCTCGCTTTCCCAGAAGACTTCTCATGTGCCTTACAGAAACAGT 2035 Query 2076 AAACTCACTCAGCTGCTGCAGGACTCCCTCGGAGGATCAGCCAAGACACTTATGTTTGTC 2135 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 2036 AAACTCACTCAGCTGCTGCAGGACTCCCTCGGAGGATCAGCCAAGACGCTTATGTTTGTC 2095 Query 2136 CACATAAGTCCAGAACCTGACACTCTCGGAGAAACTATTAGTACTCTGAAGTTTGCTGAA 2195 ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| Sbjct 2096 CACATAAGTCCAGAAGCTGACACTCTCGGAGAAACTATTAGTACTCTGAAATTTGCTGAA 2155 Query 2196 CGAGTGGGGAGTGTTGAGCTAGGCGCTGCTCGTGTGAACAAAGATAACTCAGAGGTTAAG 2255 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 2156 CGAGTGGGGAGTGTTGAGTTAGGCGCTGCTCGTGTGAACAAAGATAACTCAGAGGTTAAG 2215 Query 2256 GAGCTTAAAGAGCAGATTGCTAATCTTAAGATGGCTCTAGTGAGGAAAGGAAATGGTAAT 2315 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2216 GAGCTTAAAGAACAGATTGCTAATCTTAAGATGGCTCTAGTGAGGAAAGGAAATGGTAAT 2275 Query 2316 GATGTACAACCAACAGCTATACCAATCAACCGTGAGAGAATATCGAGAAGAAGATCACTC 2375 |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 2276 GATGTACAACCAACCGCTCTACCAATCAACCGTGAGAGAATATCGAGAAGAAGATCACTC 2335 Query 2376 GAAACTCCTACTATTCGACCCAAATTACCTACCATGGGAAACACATCAAACAACAGTAGG 2435 ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| Sbjct 2336 GAAACTCCTACTATTCGACCCAAATTACCAACCATGGGAAACACATCAAGCAACAGTAGG 2395 Query 2436 CCCCAGATCATGGATCTAAGTGGACCAGAGGC-TT-TTAAC-GACAGTACTGCATCTTCA 2492 ||||||||||||||||| ||||||||||||| || || || || ||||||||| ||| Sbjct 2396 CCCCAGATCATGGATCTTAGTGGACCAGAGGTATTCTTTACCGA---TACTGCATCGTCA 2452 Query 2493 AGAAGACACAGCTTAGATATCCATGAGCTAATGAAATCTTCTTCTCCGGCTTGGCCGAGG 2552 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 2453 AGAAGACACAGCTTAGATATCCATGAGCTTATGAAATCTTCTTCTCCGGCTTGGCCAAGG 2512 Query 2553 CAGCCACTCAATGGAAAAGACGAGGACAGAGAAT-CTAAGTC-GGGCGAGTGGATCGATA 2610 ||| ||||||||| |||||||||||||||||| | | ||||| ||| ||||||||||||| Sbjct 2513 CAGTCACTCAATGCAAAAGACGAGGACAGAGAGTTC-AAGTCAGGG-GAGTGGATCGATA 2570 Query 2611 AGCATGAAGAATTAATTCAAAATCAGAATCCAAATTCTCCCGAGCAATTCTACCAGTCAA 2670 |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2571 AGCACGAAGAGTTAATTCAAAATCAGAATCCAAATTCTCCCGAGCAATTCTACCAGTCAA 2630 Query 2671 TGGTCCCTCAACAACAATCACTATATGGTGGGAAACAAGATTTCGAAGTGCAGAGTATTA 2730 ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| Sbjct 2631 TGGTCCCTCAACAACCATCACTGTATGGTGGGAAACAAGATTTCGAAGTGCAGAGTATTA 2690 Query 2731 CAGATAACGAATCTGATGAAGCCGCAACAAGCGATTGCTCAGATTCCGATTTGCTGTGGC 2790 ||||||| |||||||||||| ||||||||||||||||||||||| |||||||| |||||| Sbjct 2691 CAGATAATGAATCTGATGAAACCGCAACAAGCGATTGCTCAGATACCGATTTGTTGTGGC 2750 Query 2791 GATTGAGCGTTCAAGTGAATGTTCCCAAAGTTTCTAATATCCAAAACTCAGCAAACCCCA 2850 ||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||| Sbjct 2751 GATTGAGCGTTCAAGTGAATGTTCCTAAGGTTTCTAATATCCAAAACTCAACAAACCCCA 2810 Query 2851 AACCAAAGAAAATTCAGCCCAGAACTGCTAAACTCTCAGAAACTAGAAGTTTAATTCCAT 2910 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct 2811 AACCAAAGAAAATTCAGCCCAGAACTGCAAAACTCTCAGAAACTAGAAGTTTAATTCCGT 2870 Query 2911 CGCTGATCCCAGCACCAAGCAAGAGACCTCCTAACACAGTAAATTCACAGCCGCAGCGAC 2970 || |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 2871 CGTTGATCCCAGCACCAAGCAAGAGACCTCCTAACACCGTAAATTCACAGCCGCAACGAC 2930 Query 2971 CAACGAGAGATGGAAAACGCAGACTGAGTTTAGGCACATGAACA------CACCAGTTTT 3024 |||| ||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 2931 CAACCAGAGATGGAAAACGCAGACTGAGTTTAGGCACATGAACATGTTTTCACCAGTTTT 2990 Query 3025 GTAAAGAGTTTAAAAAGGAAGGAGACAAATA---TTTGTTGTTTTGTATATTGTGAGAGA 3081 ||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||| Sbjct 2991 GTAAAGAGTTTAAAAAGGAAGGAGACAAAAAAGATTTGTTGTTT-GTATATTGTGAGAGA 3049 Query 3082 AA-GCTTTCTCTGTTGTGGCCGCTCTTATTGTGCCATTAAGGTAAAAATCTCAAATTTGC 3140 || |||||||||||| |||||||||||||||||||||| |||||||| ||||||||||| Sbjct 3050 AAAGCTTTCTCTGTTTTGGCCGCTCTTATTGTGCCATTTAGGTAAAA-TCTCAAATTTGT 3108 Query 3141 TGTTTTGAGTGTACAAAAAATGATTCCTTATTATACAATCTTCTTTTGGATTCT 3194 ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 3109 TGTTTTGAGTGTACAAAGAATGATTCCTTATTATACAATCTTCTTTTGGATTCT 3162 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 120669896160 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5