BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27000.1
Length=3194
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489530 jgi|Araly1|489530|fgenesh2_kg.6__2664__AT5G27000.1 4857 0.0
> Ahg489530 jgi|Araly1|489530|fgenesh2_kg.6__2664__AT5G27000.1
Length=3162
Score = 4857 bits (2630), Expect = 0.0
Identities = 2998/3174 (94%), Gaps = 32/3174 (1%)
Strand=Plus/Plus
Query 41 ATCTCAGATGGCGACGACATCGGAGATCAACAATGATCTTTCGTTTTCCGTTGTATCGAT 100
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATCGCAGATGGCGACGACATCGGAGATCAACAATGATCTTTCGTTTTCCGTTGTATCGAT 60
Query 101 TGTTGAAGATGTTCTTCAACAACATAGTAGCCGATCAAGCGACGTCGGTTTGGTTTCCAG 160
||| |||||||||||||||||||||||||||||||||||||| || ||||| |||||| |
Sbjct 61 TGTCGAAGATGTTCTTCAACAACATAGTAGCCGATCAAGCGATGTTGGTTTCGTTTCCCG 120
Query 161 AAAAGTTGAAGAATCTTCTTTGAGAAGATATGAAGCTGCTGGGTGGCTTAGAGATATGAT 220
|||||||| ||||||||||| |||||||||||||||| ||||||||| ||||||||| |
Sbjct 121 GAAAGTTGATGAATCTTCTTTAAGAAGATATGAAGCTGTTGGGTGGCTAAGAGATATGGT 180
Query 221 CGGAGTTTCCAATGGTAAAGATTTTCCAGG-AGAGCCTTCTGAAGAAGAGTTTAGGCTTG 279
||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct 181 CGGAGTTTCCAATGGTAAAGATTTTCC-GGCTGAGCCTTCTGAAGAAGATTTTAGGCTTG 239
Query 280 GATTGCGAAGTGGGATCGTTCTTTGTAATGTTCTTAACAAAGTTAATCCTGGATCAGTCT 339
|||||||||| || ||||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct 240 GATTGCGAAGCGGAATCGTACTTTGCAATGTTCTTAACAAAGTTAATCCTGGATCAGTGT 299
Query 340 CAAAGGTCGTTGAAGCGCCGGACGATGTTGCAGATGGAGCTGCACTTTCAGCTTTTCAAT 399
||||||| |||||||| ||||| ||||||| ||||||||||||||| |||||||| ||||
Sbjct 300 CAAAGGTTGTTGAAGCACCGGATGATGTTGTAGATGGAGCTGCACTCTCAGCTTTCCAAT 359
Query 400 ACTTTGAAAACATAAGGAATTTTTTAGTAGCTATAGAGGAAATGGGGTTGCCATCATTTG 459
||||||||||||| || || ||||||||||| ||||||||||||||||||||||||||||
Sbjct 360 ACTTTGAAAACATCAGAAACTTTTTAGTAGCCATAGAGGAAATGGGGTTGCCATCATTTG 419
Query 460 AAGCTTCAGATATGGAGAAGGGAGGCAAGTCTATAAGGATAGTGAACTGCATTCTTGCCC 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AAGCTTCAGATATGGAGAAGGGAGGCAAGTCTATAAGGATAGTGAACTGCATTCTTGCCC 479
Query 520 TTAAGTCTTATAGTGAGTGGAAACTGAAAGGTGAAAATGGTCCATGGAGGTATGGATCTA 579
|||| ||||| || |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 480 TTAAATCTTACAGCGAGTGGAAACTGAAAGGTGAAAATGGTCCATGGAGGTATGGATCCA 539
Query 580 ACATGAAACATAACTTTGGATCGAGAAAACTATTTCTGAGAAAAAGTTCAGAGCCATTTG 639
|||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 540 ACATGAAAAATAACTTTGGATCGAGAAAACCATTTCTGAGAAAAAGTTCAGAACCATTTG 599
Query 640 TTAGTTCTATATCGAGAACTCAGTCGACGGATATGTTATCAACTGATCA-ACCTCTGAGT 698
| ||||||||||| |||||||| || |||||||| | |||||||||| | |||| |||||
Sbjct 600 TGAGTTCTATATCAAGAACTCACTCTACGGATATCTCATCAACTGAT-ACACCTATGAGT 658
Query 699 TCTGATGGAGATTCTAGATCCATAAATGGGCTTGTTCGGTCATTCATTGCAGACAGAAAG 758
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 659 TCCGATGGAGATTCTAGATCCATAAATGGGCTTGTTCGCTCATTCATTGCAGACAAAAAG 718
Query 759 CATGAAGATATTCCAAATGTTGTAGAGTCTGTGTTGAACAAAGTTATGGAAGAAGTCCAG 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 CATGAAGATATTCCAAATGTTGTAGAGTCTGTGTTGAACAAAGTTATGGAAGAAGTCCAG 778
Query 819 CAGCGTTTATCAATCCACAATGAAATGATGAAATCAAGTTCAAAGCCTATTCCAGAAGAT 878
|| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 779 CAACGTTTATCAATCCACAACGAAATGATGAAATCAAGATCAAAGCCTATTCCAGAAGAT 838
Query 879 GATTCATCCTGTGAGACAGTGGTCCGGTCTCAGCTGTGTGATGCAAGACAACATGAGGAA 938
|||||||| ||||||||| |||| ||||||||||| ||||||||||||||||||||||||
Sbjct 839 GATTCATCATGTGAGACAATGGTTCGGTCTCAGCTATGTGATGCAAGACAACATGAGGAA 898
Query 939 GCAGAAGAAAATAGTCCGCCCCAGGTTGTGGaaaaaaaGTTTCAAAGGACAAATTTTGAA 998
|||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 899 TCAGAAGAAAACAGTCCGCCCCAGGTTGTAGAAAAAAGGTTTCAAAGGACAAATTTTGAA 958
Query 999 CATCACGAAGAACAAAAGATTCTTCTGAATCAACAAAAACACATCCAGGAGTTGAAGCAA 1058
||| ||||||||||| |||||||| |||| ||||||||||||||||| ||||| ||||||
Sbjct 959 CATTACGAAGAACAAGAGATTCTTTTGAACCAACAAAAACACATCCAAGAGTTAAAGCAA 1018
Query 1059 ACCTTATACACTACAAAAGCAGGAATGAAATTGCTGCAGATGAAGTATCAAGAAGATTTC 1118
|||||| ||||||||||||| |||||| |||| |||||||||||||||||||||||||||
Sbjct 1019 ACCTTAAACACTACAAAAGCGGGAATGCAATTACTGCAGATGAAGTATCAAGAAGATTTC 1078
Query 1119 TTTCATCTAGGCAAGCATTTAAATGGTTTAGCTTATGCGGCTACGGGATACAAAAGGGTT 1178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 TTTCATCTAGGCAAGCATTTAAATGGTTTAGCTTATGCGGCTACGGGATACAAAAGGGTT 1138
Query 1179 CTTGAAGAAAACCGTAAACTGTACAATCTAGTGCAGGATCTAAAAGGAAACATACGGGTG 1238
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 CTTGAAGAAAACCGCAAACTGTACAATCTAGTGCAGGATCTAAAAGGAAACATACGGGTG 1198
Query 1239 TACTGTCGAGTTAGGCCGTTCTTGCCTGGGCAA-GAAAGTGGTGGTTTGAGTGCCGTGGA 1297
|| ||||| |||||||| ||||||||||||||| ||| |||||||||||||||||| |
Sbjct 1199 TATTGTCGGGTTAGGCCATTCTTGCCTGGGCAATCAAA-TGGTGGTTTGAGTGCCGTAG- 1256
Query 1298 AG-ACATAGACGAAGGGACCATCACGATCAGAGTTCCATCAAAGTATGGGAAAGCAGGAC 1356
|| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
Sbjct 1257 AGCACATAGACGAAGGGACCATCACCATCAGAGTACCATCAAAGTATGGGAAAGCAGGGC 1316
Query 1357 AAAAACCATTTATGTTCAACAAAGTCTTTGGTCCTTCTGCAACACAAGAGGAAGTGTTTT 1416
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 AAAAACCATTTATGTTCAATAAAGTCTTTGGTCCTTCTGCAACACAAGAGGAAGTGTTTT 1376
Query 1417 CAGACATGCAGCCTTTGGTACGGTCGGTTCTCGATGGCTACAATGTCTGCATCTTCGCTT 1476
||||||||| ||||| ||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1377 TAGACATGCAACCTTTAGTACGCTCGGTTCTTGATGGCTACAATGTCTGCATCTTCGCTT 1436
Query 1477 ATGGCCAAACCGGGTCAGGGAAAACTTTTACCATGACAGGGCCTAAGGAACTGACTGAAG 1536
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 ATGGCCAAACTGGGTCAGGGAAAACTTTTACCATGACAGGGCCTAAGGAACTGACTGAAG 1496
Query 1537 AGAGCCTAGGTGTGAACTACAGGGCACTGGCAGATCTGTTTCTTCTATCAAATCAAAGAA 1596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 AGAGCCTAGGTGTGAACTACAGGGCACTGGCAGATCTGTTTCTTCTATCAAATCAAAGAA 1556
Query 1597 AAGACACGACCAGCTACGAAATCTCAGTTCAGATGTTGGAAATTTACAACGAGCAAGTCA 1656
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1557 AAGACACGACCAACTACGAAATCTCAGTTCAGATGCTGGAAATTTACAACGAGCAAGTCA 1616
Query 1657 GAGATCTACTTGCCCA-AGATGGCCAGACTAAAAGGTTAGAGATCAGAAACAACTCTCAC 1715
|||||||||||| ||| |||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1617 GAGATCTACTTG-CCACAGATGGCCAGACTAAAAGATTAGAGATCAGAAATAACTCTCAC 1675
Query 1716 AATGGAATCAATGTACCGGAAGCAAGTCTAGTGCCTGTCTCATCGACGGATGACGTTATA 1775
|||||||| ||||| |||| ||||||||||| |||||||||||||||||||||| |||||
Sbjct 1676 AATGGAATTAATGTTCCGGGAGCAAGTCTAGAGCCTGTCTCATCGACGGATGACATTATA 1735
Query 1776 CAGCTAATGGATTTGGGACACATGAATCGTGCAGTGAGCTCTACAGCCATGAATGACAGA 1835
||||| ||||| ||||||| ||||| |||||||||||||||||||| ||||||||||||
Sbjct 1736 CAGCTGATGGAACTGGGACAAATGAACCGTGCAGTGAGCTCTACAGCTATGAATGACAGA 1795
Query 1836 AGTAGTCGATCTCACAGTTGTGTAACTGTTCATGTTCAAGGCAGAGACCTCACATCTGGC 1895
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1796 AGTAGTCGATCTCACAGTTGTGTAACTGTTCATGTTCAAGGCAGAGACCTCACATCTGGG 1855
Query 1896 TCTATCCTCCATGGTTCTATGCATCTGGTTGATCTTGCAGGAAGCGAGAGAGTGGACAAG 1955
| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1856 GCCATCCTTCATGGTTCTATGCATCTAGTTGATCTTGCAGGAAGCGAGAGAGTGGACAAG 1915
Query 1956 TCTGAGGTGACTGGAGACAGACTGAAGGAGGCTCAACACATCAACAAGTCCCTCTCGGCT 2015
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1916 TCTGAGGTGACTGGAGACAGACTGAAGGAGGCTCAGCACATCAACAAGTCCCTCTCGGCT 1975
Query 2016 CTTGGAGATGTCATCTCCTCGCTTTCCCAGAAGACTTCTCATGTGCCTTACAGAAACAGT 2075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1976 CTTGGAGATGTCATCTCCTCGCTTTCCCAGAAGACTTCTCATGTGCCTTACAGAAACAGT 2035
Query 2076 AAACTCACTCAGCTGCTGCAGGACTCCCTCGGAGGATCAGCCAAGACACTTATGTTTGTC 2135
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2036 AAACTCACTCAGCTGCTGCAGGACTCCCTCGGAGGATCAGCCAAGACGCTTATGTTTGTC 2095
Query 2136 CACATAAGTCCAGAACCTGACACTCTCGGAGAAACTATTAGTACTCTGAAGTTTGCTGAA 2195
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2096 CACATAAGTCCAGAAGCTGACACTCTCGGAGAAACTATTAGTACTCTGAAATTTGCTGAA 2155
Query 2196 CGAGTGGGGAGTGTTGAGCTAGGCGCTGCTCGTGTGAACAAAGATAACTCAGAGGTTAAG 2255
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2156 CGAGTGGGGAGTGTTGAGTTAGGCGCTGCTCGTGTGAACAAAGATAACTCAGAGGTTAAG 2215
Query 2256 GAGCTTAAAGAGCAGATTGCTAATCTTAAGATGGCTCTAGTGAGGAAAGGAAATGGTAAT 2315
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2216 GAGCTTAAAGAACAGATTGCTAATCTTAAGATGGCTCTAGTGAGGAAAGGAAATGGTAAT 2275
Query 2316 GATGTACAACCAACAGCTATACCAATCAACCGTGAGAGAATATCGAGAAGAAGATCACTC 2375
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2276 GATGTACAACCAACCGCTCTACCAATCAACCGTGAGAGAATATCGAGAAGAAGATCACTC 2335
Query 2376 GAAACTCCTACTATTCGACCCAAATTACCTACCATGGGAAACACATCAAACAACAGTAGG 2435
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 2336 GAAACTCCTACTATTCGACCCAAATTACCAACCATGGGAAACACATCAAGCAACAGTAGG 2395
Query 2436 CCCCAGATCATGGATCTAAGTGGACCAGAGGC-TT-TTAAC-GACAGTACTGCATCTTCA 2492
||||||||||||||||| ||||||||||||| || || || || ||||||||| |||
Sbjct 2396 CCCCAGATCATGGATCTTAGTGGACCAGAGGTATTCTTTACCGA---TACTGCATCGTCA 2452
Query 2493 AGAAGACACAGCTTAGATATCCATGAGCTAATGAAATCTTCTTCTCCGGCTTGGCCGAGG 2552
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 2453 AGAAGACACAGCTTAGATATCCATGAGCTTATGAAATCTTCTTCTCCGGCTTGGCCAAGG 2512
Query 2553 CAGCCACTCAATGGAAAAGACGAGGACAGAGAAT-CTAAGTC-GGGCGAGTGGATCGATA 2610
||| ||||||||| |||||||||||||||||| | | ||||| ||| |||||||||||||
Sbjct 2513 CAGTCACTCAATGCAAAAGACGAGGACAGAGAGTTC-AAGTCAGGG-GAGTGGATCGATA 2570
Query 2611 AGCATGAAGAATTAATTCAAAATCAGAATCCAAATTCTCCCGAGCAATTCTACCAGTCAA 2670
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2571 AGCACGAAGAGTTAATTCAAAATCAGAATCCAAATTCTCCCGAGCAATTCTACCAGTCAA 2630
Query 2671 TGGTCCCTCAACAACAATCACTATATGGTGGGAAACAAGATTTCGAAGTGCAGAGTATTA 2730
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2631 TGGTCCCTCAACAACCATCACTGTATGGTGGGAAACAAGATTTCGAAGTGCAGAGTATTA 2690
Query 2731 CAGATAACGAATCTGATGAAGCCGCAACAAGCGATTGCTCAGATTCCGATTTGCTGTGGC 2790
||||||| |||||||||||| ||||||||||||||||||||||| |||||||| ||||||
Sbjct 2691 CAGATAATGAATCTGATGAAACCGCAACAAGCGATTGCTCAGATACCGATTTGTTGTGGC 2750
Query 2791 GATTGAGCGTTCAAGTGAATGTTCCCAAAGTTTCTAATATCCAAAACTCAGCAAACCCCA 2850
||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||
Sbjct 2751 GATTGAGCGTTCAAGTGAATGTTCCTAAGGTTTCTAATATCCAAAACTCAACAAACCCCA 2810
Query 2851 AACCAAAGAAAATTCAGCCCAGAACTGCTAAACTCTCAGAAACTAGAAGTTTAATTCCAT 2910
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 2811 AACCAAAGAAAATTCAGCCCAGAACTGCAAAACTCTCAGAAACTAGAAGTTTAATTCCGT 2870
Query 2911 CGCTGATCCCAGCACCAAGCAAGAGACCTCCTAACACAGTAAATTCACAGCCGCAGCGAC 2970
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 2871 CGTTGATCCCAGCACCAAGCAAGAGACCTCCTAACACCGTAAATTCACAGCCGCAACGAC 2930
Query 2971 CAACGAGAGATGGAAAACGCAGACTGAGTTTAGGCACATGAACA------CACCAGTTTT 3024
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2931 CAACCAGAGATGGAAAACGCAGACTGAGTTTAGGCACATGAACATGTTTTCACCAGTTTT 2990
Query 3025 GTAAAGAGTTTAAAAAGGAAGGAGACAAATA---TTTGTTGTTTTGTATATTGTGAGAGA 3081
||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||
Sbjct 2991 GTAAAGAGTTTAAAAAGGAAGGAGACAAAAAAGATTTGTTGTTT-GTATATTGTGAGAGA 3049
Query 3082 AA-GCTTTCTCTGTTGTGGCCGCTCTTATTGTGCCATTAAGGTAAAAATCTCAAATTTGC 3140
|| |||||||||||| |||||||||||||||||||||| |||||||| |||||||||||
Sbjct 3050 AAAGCTTTCTCTGTTTTGGCCGCTCTTATTGTGCCATTTAGGTAAAA-TCTCAAATTTGT 3108
Query 3141 TGTTTTGAGTGTACAAAAAATGATTCCTTATTATACAATCTTCTTTTGGATTCT 3194
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 3109 TGTTTTGAGTGTACAAAGAATGATTCCTTATTATACAATCTTCTTTTGGATTCT 3162
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 120669896160
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5