BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27060.1
Length=2874
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477857 jgi|Araly1|477857|fgenesh2_kg.3__558__AT3G05660.1 1450 0.0
Ahg928821 jgi|Araly1|928821|scaffold_301278.1 230 6e-59
> Ahg477857 jgi|Araly1|477857|fgenesh2_kg.3__558__AT3G05660.1
Length=2832
Score = 1450 bits (785), Expect = 0.0
Identities = 1695/2119 (80%), Gaps = 123/2119 (6%)
Strand=Plus/Plus
Query 591 TCTAGATCTTTCTTATAATCGGTTT-TTTGGTCAGTTTCCGTCTTCTATCGGAGGTCTTT 649
|||||| ||||| ||||||| ||| |||||| | || ||||| || ||| ||||
Sbjct 345 TCTAGACCTTTCATATAATC-ATTTGAGTGGTCAAATCCCATCTTCGATTGGAAACCTTT 403
Query 650 CTCATCTCACCACTCTC-AGCCTTTTCAGTAACAAAT-TTTC-G-GGTCAGATTCCATCT 705
||||||||||| ||||| | || |||| | | || | |||| | ||| |||||| |||
Sbjct 404 CTCATCTCACCTCTCTCTA-CC-TTTCTG-GA-AATTATTTCAGTGGTTGGATTCCTTCT 459
Query 706 TCAATTGGAAATCTTTCTAATCTCACCACTCT-CGACCTTTCTAATAACAATTTT-TCGG 763
||| ||||||| |||| | | |||||| |||| || ||| | | ||||||||||| | ||
Sbjct 460 TCACTTGGAAACCTTTTTCACCTCACCTCTCTCCG-CCTCTATGATAACAATTTTGTTGG 518
Query 764 GTCAGATTCCATCTTTTA-TTGGAAACCTTTCTCAACTTACCTTTCTCGGCCTCTT-TAG 821
| | || ||||| || | |||||||||| ||| | || |||||||||| ||| || |||
Sbjct 519 G-GAAATCCCATC-TTCACTTGGAAACCTGTCTTATCTCACCTTTCTCGACCT-TTCTAG 575
Query 822 TAACAATTTCGTTGGTGAAATCCCATCTTCTTTTGGCAATCTAAACCAGCTGACCCG-CT 880
|||||||||||||||||||||||||||||||||||||| | | ||||| || | | ||
Sbjct 576 TAACAATTTCGTTGGTGAAATCCCATCTTCTTTTGGCAGTTTGAACCAATTG-TCTGTCT 634
Query 881 TATATGTTGATGACAATAAGCTCAGCGGAAACTTTCCCA-ATGTCCTACTGAA-CTTGAC 938
|| ||||||| | ||||| || || || ||| ||||| ||| ||| | || ||| ||
Sbjct 635 TACGTGTTGATAATAATAAACTTAGTGGTAAC-CTCCCACATGAACTAATCAATCTT-AC 692
Query 939 AGGGTTGTCACTTTTATCAC-TCTCCAACAATAAGTTCACAGGCACGCTTCCTCCTAATA 997
| ||||||| |||||| | | | ||||| ||||||||||||||||||||||||| |
Sbjct 693 AAAGTTGTCAGAAATATCACTTTTAC-ACAATCAGTTCACAGGCACGCTTCCTCCTAACA 751
Query 998 TCACTTCACTATCCA-ACTTGATG-GATTTTGATGCAAGT-GACAACGCCTTCACCGGAA 1054
|||||||||| |||| ||||| | |||| |||||| || ||| ||| ||||
Sbjct 752 TCACTTCACTCTCCATCCTTGA-GTCCTTTT-CGGCAAGTGGA-AACAATTTCGTTGGAA 808
Query 1055 CGT-TCCCTTCTTTTCTCTTCACCATTCCTTCTTTGACT-TACATTCGTTTGAATGGTAA 1112
| | ||||||||| ||||||||||||||||||| | ||| | ||| |||| | |||
Sbjct 809 C-TATCCCTTCTTCTCTCTTCACCATTCCTTCTATAACTCT-TATTTTTTTGGACAATAA 866
Query 1113 CCAACTCAAAGGCACTCTTGAGTTTGGAAATATATCTTCACCATCTAACCTA-TATGAGT 1171
||||||||| ||||||||||||||||| |||||||||||||||||||| || || | ||
Sbjct 867 CCAACTCAACGGCACTCTTGAGTTTGGGAATATATCTTCACCATCTAATTTACTA-GTGT 925
Query 1172 TA-GACATTGGCAACAACAACTTCATAGGACCAATCCCTAGT-TCCATTTCCAAATTAGT 1229
|| || ||||| |||||||| | ||| |||||||||| | || ||||||| ||||||
Sbjct 926 TACAAC-TTGGCGGTAACAACTTGAGAGGTCCAATCCCTA-TATCTATTTCCAGATTAGT 983
Query 1230 CAAACTT-TTCCGACTTGACATTTCCCATTTAAACACCCAAGGCCCAGTTGACTTTAGTA 1288
||| ||| | ||||||| |||||||||| |||| |||||| ||||||||||||| ||
Sbjct 984 CAACCTTAGGAC-ACTTGACCTTTCCCATTTCAACATCCAAGGTCCAGTTGACTTTAATA 1042
Query 1289 TCTTCTCCCATCTCAAGTCACTCCTAGATCTAAACATATCCCATTTGAACACCACCACTA 1348
||||||| |||||||| | || | |||| || |||| |||| ||||||||||||||
Sbjct 1043 TCTTCTCGCATCTCAAATTGCTTGGAAATCTTTACCTATCTCATTCGAACACCACCACTA 1102
Query 1349 GGATCGACTTGAACT--ATTTCTTATCATATTTCAAAAGGCTCCTTTTATTGGATCTCTC 1406
||||||||||| | | ||||||||| |||||| | |||| ||| ||||||||||||
Sbjct 1103 CAATCGACTTGAA-TGCA-GTCTTATCATGTTTCAAGATGCTCATTTCATTGGATCTCTC 1160
Query 1407 AGGCAACCATGTTTCGGCCACAAACAAAAGTTCAGTTTCAGATCCTCCTTCGCAATTGAT 1466
||||||||||||||| ||||||||||| | ||||||||| || ||||||||| ||||||
Sbjct 1161 AGGCAACCATGTTTCAGCCACAAACAACATTTCAGTTTCTGACCCTCCTTCGGGATTGAT 1220
Query 1467 ACAATCTTTGTACTTGTCAGGGTGCGGTATCACTGAATTTCCAGAGTTCGTAAGAACCCA 1526
| |||||| |||||||||| || |||||||| || ||||||||| || ||||||| ||
Sbjct 1221 AGGCTCTTTGAACTTGTCAGGATGTGGTATCACCGAGTTTCCAGAGATCCTAAGAACGCA 1280
Query 1527 ACACGAATTGGGGTTTCTAGACATTTCCAACAACAAAATCAAAGGTCAAGTTCCTGACTG 1586
|| | || || || ||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1281 ACGCCAAATGAGGACGCTAGACATTTCCAACAACAAAATCAAAGGTCAAGTGCCTGGCTG 1340
Query 1587 GTTA-TGGAGGCTACCAATCTTGTACTACGTGAATCTTTCCAACAACACTTTAATCGGTT 1645
|||| | | |||| | | | | | ||| || || |||||||||||| ||| ||||||
Sbjct 1341 GTTACT--A--CTAC-AGT-TGG-ATTACATGTATATTTCCAACAACAATTTCGTCGGTT 1393
Query 1646 TCCAAAGA-C--C-AT-C--GAA-A--CCT--G-----AA-CCATCTCTGCTGTACTTGC 1687
|| ||||| | | | | ||| | ||| | || |||||| || | |||||
Sbjct 1394 TCGAAAGATCAACGAAACCTGAAGAATCCTTTGTCCCGAAACCATCTATGAAGCACTTGT 1453
Query 1688 TTGGCTCCAACAATAACTTCA-TAGGCAAGATTCCTTCTTTCATATGCGGGTTGCGTTCT 1746
||||||||||||| || |||| | || |||||||| |||||||| ||| ||||| |||
Sbjct 1454 TTGGCTCCAACAACAATTTCAAT-GGAAAGATTCCATCTTTCATCTGCTCGTTGCACTCT 1512
Query 1747 CTAAACACACTCGATTTATCTGACAACAACTTTAATGGTTCAATCCCTCGTTGCATGGGA 1806
|||| || |||||||||||| |||||||||| | |||||||||||||| ||| ||||||
Sbjct 1513 CTAATCATTCTCGATTTATCTAACAACAACTTCAGTGGTTCAATCCCTCCTTGTATGGGA 1572
Query 1807 CA-TCTCAAGAGTACTCTTTCAGTTCTAAACCTTCGTCAGAATCATCTTAGCGGAGGTCT 1865
| | |||||||| ||||||||| ||||||||| |||| ||||| |||||| ||| ||||
Sbjct 1573 AAAT-TCAAGAGTGCTCTTTCAGATCTAAACCTACGTCGGAATCGTCTTAGTGGAAGTCT 1631
Query 1866 TCCAAAGCAA-ATATTTGAAATACTG-A-GGTCTCTTGATGTCG-GCCATAACCAGCTAG 1921
||||||| || | | | |||| | | | |||| |||||||| | | |||||| | || |
Sbjct 1632 TCCAAAG-AATACAAT-GAAA-AGTTTAAGGTCGCTTGATGT-GAGTCATAACGAACTGG 1687
Query 1922 TGGGAAAGCTACCAAGATCTTTGAGTTTT-TTCTCTACTCTTGAAGTTTTGAACGTGG-A 1979
||||||||| ||||||||| ||| | ||||||||||||||||||||||| |||| |
Sbjct 1688 AGGGAAAGCTTCCAAGATCTCTGA-TCCACTTCTCTACTCTTGAAGTTTTGAATGTGGGA 1746
Query 1980 AAGCAACAGAATCAACGACACGTTTCCCTTCTGGTTGAGTTCTCT-ACCGAAGCTACAAG 2038
|| |||||||||||||||||||||||| |||||||||||| |||| | ||||| ||||
Sbjct 1747 AA-CAACAGAATCAACGACACGTTTCCGTTCTGGTTGAGTACTCTTAAA-AAGCTGCAAG 1804
Query 2039 TTCTTGTATTACGCTCCAATGCATTCCATGGACCAATACATGAAG-C-CACATTCCCTGA 2096
||||||| ||||||||||| ||||| || |||| ||||| ||| | ||| |||| | |
Sbjct 1805 TTCTTGTCTTACGCTCCAACGCATTTCACGGACGGATACAC-AAGACTCACTTTCC-TAA 1862
Query 2097 GTTGCGCATCATCGATATATCACATAATCGCTTCAATGGAACTTTGCCAACAGAGTACTT 2156
|||||| |||||||| ||||| | ||||| ||||||||||| ||||||||||| | |||
Sbjct 1863 GTTGCGAATCATCGACATATCCCGTAATCAATTCAATGGAACATTGCCAACAGATTGCTT 1922
Query 2157 TGTGAAGTGGAGTGCTATGT-CATCACTTGGAAAAAACGAAGACCAGTCTAACGAAAAGT 2215
|||| | |||| ||| |||| | |||||||| ||||| ||||||| || |||||||||||
Sbjct 1923 TGTGGACTGGACTGCAATGTAC-TCACTTGGCAAAAATGAAGACCGGTTTAACGAAAAGT 1981
Query 2216 ACATGGGATCAGGCCTTTACTACCAAGATTCAATGGTTTTGATGAATAAAGGTGTAGCGA 2275
|||||||||||||| | | ||||| |||||| |||||||||||||||||||||||| ||
Sbjct 1982 ACATGGGATCAGGC-TAT--TACCATGATTCAGTGGTTTTGATGAATAAAGGTGTAGAGA 2038
Query 2276 TGGAGCTGGTACGTATCCTCACAATCTACACAGCAGTCGACTTTTCCGGAAACAGATTTG 2335
||||||||||||||||||| | |||||||||||| |||||||||| | ||||| |||||
Sbjct 2039 TGGAGCTGGTACGTATCCTAAAAATCTACACAGCTCTCGACTTTTCTGAAAACAAATTTG 2098
Query 2336 AAGGAGAGATTCCAA-AGTCCATTGGTCTATTGAAAGAGCTTC-TCGTGCTCAGCTTGTC 2393
||||||||||||||| | ||||| ||||||||||||||||||| | | |||| ||||||
Sbjct 2099 AAGGAGAGATTCCAAGA-TCCATGGGTCTATTGAAAGAGCTTCATA-TCCTCAACTTGTC 2156
Query 2394 AAACAATGCTTTCAGTGGCCACATGCCTTCATCTATGGGGAACCTGACAGCTCTCGAGTC 2453
|| ||||| ||||| || ||||| || |||||||||| ||| ||| || ||||||||
Sbjct 2157 AAGCAATGGTTTCACCGGACACATCCCATCATCTATGGCGAATTTGAGAGAGCTCGAGTC 2216
Query 2454 ATTGGACGTTTCT-AAGAACAAGCTTACAGGAGAGATTCC-ACAAGAGCTAGGGGACCTT 2511
| |||| ||||| || ||||||||| ||||||| ||||| | |||| |||||| ||||
Sbjct 2217 ACTGGATGTTTCCCAA-AACAAGCTTTCAGGAGAAATTCCGA-AAGAACTAGGGAACCTC 2274
Query 2512 TCGTTCCTTGCGTATATGAACTTCTCTCATAACCAGCTTGCAGG-CCTAGTACCAGGAGG 2570
|||| |||||| || |||||||| |||||||||||||||| ||| || ||||||||||||
Sbjct 2275 TCGTACCTTGCCTACATGAACTTTTCTCATAACCAGCTTGTAGGTCC-AGTACCAGGAGG 2333
Query 2571 C-CAGCAATTTCTAACGCAAAATTGCT-CTGCCTTT-GAAGATAAC-TTGGGACTTT-TC 2625
| | || |||| ||||||| | ||| | | |||| ||||| ||| ||||| |||| |
Sbjct 2334 CACT-CAGTTTCAAACGCAATCT-GCTTC-GTCTTTTGAAGAAAACCTTGGG-CTTTGT- 2388
Query 2626 GGCTCTTC-TCTTGAAGAA 2643
|| || || ||| ||||||
Sbjct 2389 GG-TCGTCCTCTAGAAGAA 2406
> Ahg928821 jgi|Araly1|928821|scaffold_301278.1
Length=419
Score = 230 bits (124), Expect = 6e-59
Identities = 268/333 (80%), Gaps = 27/333 (8%)
Strand=Plus/Plus
Query 1 ATGGAAGGCTTTTGGAACTCAAAGAGTATCATTCGTATTACTCTCTCTTTTATTTTCTTA 60
||| ||||||| || ||||||| |||||||| || ||||||||| |||||| ||||||||
Sbjct 21 ATGAAAGGCTTCTGTAACTCAACGAGTATCACTCCTATTACTCTTTCTTTTCTTTTCTTA 80
Query 61 TTCATTTGTCA-TTTTCTG-GACGTGCTTGCGGCTCCAACTAGGA-ACTTGTGTCGTCCC 117
|||||||| | ||||| | || ||| |||||| ||| |||| | ||||||||||||||
Sbjct 81 CTCATTTGT-ATTTTTC-GAGATGTGTTTGCGGTTCCTACTA-AACACTTGTGTCGTCCC 137
Query 118 GAACAAAGGGATGCACTCCTCGCGTTCAAAAACGAGTTTGAGATTGGGAAGCCT-TCTCC 176
||||||||||||||||| |||| |||||| ||||||||| |||||||||||||| | ||
Sbjct 138 GAACAAAGGGATGCACTTCTCGAGTTCAAGAACGAGTTTAAGATTGGGAAGCCTAT-TC- 195
Query 177 TGATCATTGTAAGATTTATGGCATTGAATCTCCTCGGAAGACGGACTCATGGGGGAATAA 236
| ||| |||| | ||| | | || | |||||||| |||||| ||||
Sbjct 196 T--TCAATGTAC--T----GGCGTACA-TC-CA----AAGACGGAGTCATGGACCAATAC 241
Query 237 CAGCGACTGTTGTAATTGGGAGGG-AGTCACGTGCAATGCCAAGTCCGGGGAAGTGATCG 295
|||||| ||||||||||||||||| | ||||||||||||||| || |||| |||||| |
Sbjct 242 CAGCGATTGTTGTAATTGGGAGGGTA-TCACGTGCAATGCCATCTCTGGGGTAGTGATTG 300
Query 296 AGCTAGACCTAAGCTGCAGCT-CTCTCCATGGC 327
|||||||||| || ||||| | || ||||||||
Sbjct 301 AGCTAGACCTTAGTTGCAGTTGCT-TCCATGGC 332
Score = 76.8 bits (41), Expect = 8e-13
Identities = 58/66 (88%), Gaps = 2/66 (3%)
Strand=Plus/Plus
Query 330 GTTTCATTCCAACAGCAGTATTCGAAACCTTCATTTC-CTAACCACTCTAGACCTTTCAT 388
||| ||| |||| || ||| ||| |||||||| |||| ||||||||||||||||||||||
Sbjct 355 GTTACATACCAATAGTAGTCTTCAAAACCTTC-TTTCTCTAACCACTCTAGACCTTTCAT 413
Query 389 TTAATG 394
||||||
Sbjct 414 TTAATG 419
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108481017760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5