BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27070.1
Length=864
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489617 jgi|Araly1|489617|fgenesh2_kg.6__2751__AT5G27070.1 1048 0.0
Ahg942291 jgi|Araly1|942291|scaffold_602835.1 957 0.0
Ahg489614 jgi|Araly1|489614|fgenesh2_kg.6__2748__AT5G27944.1 808 0.0
Ahg489532 jgi|Araly1|489532|fgenesh2_kg.6__2666__AT5G27945.1 324 8e-88
> Ahg489617 jgi|Araly1|489617|fgenesh2_kg.6__2751__AT5G27070.1
Length=834
Score = 1048 bits (567), Expect = 0.0
Identities = 762/854 (89%), Gaps = 22/854 (3%)
Strand=Plus/Plus
Query 13 ATGTCGACGAAGAAGAAAACCAAATTGTCTGTGAGAAACCAAACTTGTTTCAAGAAATCG 72
|||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct 1 ATGTCGACGAAGAAGAAAACCAAACTGTCTCTGAGAAACCAAACTCGTTTCAAGAAATCA 60
Query 73 TCCCTGTCTTCTTCTTCTACTGCAAAAAAGACCACGAATTTGTCTATGAGAGAACAGACC 132
|| ||| ||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 61 TCTCTG---TCTTCTTCTACTGCAAAAAAGACCACGAATTTGTCTATGAGAGAAGACACA 117
Query 133 ATGTTCAAGAAAGCCTTGGAGCTTTCAACTCTGTGCAACATCGATGTCTGTGTCATATAC 192
||||| ||||||||||| |||||||||||||||||| |||| || ||||||||||||||
Sbjct 118 ATGTTTAAGAAAGCCTTCGAGCTTTCAACTCTGTGCGACATTGAAGTCTGTGTCATATAT 177
Query 193 TATGGTCGTGACGGAAAACTCATCAAGACATGGCCGGAGGATCAATCAAAAGTTCGAGAC 252
|| |||||||||||| |||||||||||||||||||||| ||| ||||||| |||||||||
Sbjct 178 TACGGTCGTGACGGAGAACTCATCAAGACATGGCCGGAAGATAAATCAAAGGTTCGAGAC 237
Query 253 ATGGCTGAGAGGTTTAGCAGATTACACGAGAGAGAGCGATGCAAGAAAAGAACCAACCTT 312
||||||||||| |||| || | || |||| |||||| || |||||||||| || ||||||
Sbjct 238 ATGGCTGAGAGATTTACCAAACTAAACGATAGAGAGAGACGCAAGAAAAGCACAAACCTT 297
Query 313 TCTCTGTTTCTACGTAAGAAGATCCTCGACGAC-ACTAAATTGTCGGAGAAAGTCTTAGA 371
|||||||| ||| | |||||||||||||||||| | ||| | ||||||||||| |||||
Sbjct 298 TCTCTGTTGCTAAGGAAGAAGATCCTCGACGACGA-TAAGCTCTCGGAGAAAGTTTTAGA 356
Query 372 GATGGAGGATTCGTTAGAAAGTGGTCTACGAGTACTACAAGATAAGCTTCTGTTACTCCA 431
|||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 357 GATGAAGGATTCGTTAGAAAGTGGTCTACGGGTATTACAAGATAAGCTTCTGTTACTCCA 416
Query 432 ACCCGAGAAAAACCAGACCGAGTTTGGTCAGACCCGTGCGGTTTCTTCCACAACGAATCC 491
|||||| ||| |||||||||||| ||||||| ||||| |||||||||||||||||||||
Sbjct 417 ACCCGA-AAA--CCAGACCGAGTTAGGTCAGAGCCGTGTGGTTTCTTCCACAACGAATCC 473
Query 492 ATTGTCTCCTCCTCCTTCGCTAATTGAGGATCATCGTCATCAACAATGGACAGAACCATT 551
||||||| || |||| | | | | |||||| ||| ||||||||||||||| || |
Sbjct 474 ATTGTCT--TC-TCCT--G--A---G-G-ATCATCATCAACAACAATGGACAGAATCACT 521
Query 552 GATGAGTGGTGTGTCAAACACAGAGCAAGACCTATCGACGTCATCATTGAGTCAAAATCA 611
| ||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 522 GGTGAATGGTGTGTCAAACACAGAGCAAGACCTATCGATGTCATCATTGAGTCAACATCA 581
Query 612 GAGCAGAATTT-CAGTCTTTCTCTATAACCATGACAACCGTAGCTTCTATCAAGTCCCTG 670
||||| ||||| || |||||||||||||||||||||| ||||||||| |||| ||||||
Sbjct 582 GAGCA-AATTTTCAATCTTTCTCTATAACCATGACAATGGTAGCTTCTGTCAACTCCCTG 640
Query 671 ACTCAGTTTCTAGCTTTGACCAATCGGCTTTACTTGGGGAACAAGGATCTGGTCTAGGAA 730
|||| |||||||||||||||||||||||||||||||||| ||||||||| | |||| |||
Sbjct 641 ACTCTGTTTCTAGCTTTGACCAATCGGCTTTACTTGGGGCACAAGGATCAGATCTAAGAA 700
Query 731 GTAACTTTGATCTTCCTCCCATGGTTTTTCCTCCTCAGATGCAGACACAAACCCCACTTG 790
|||||||||||| || ||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 701 GTAACTTTGATCATCTTCCTATGGTGTTTCCTCCTCAGATGCAGACACAAACCCCACTTG 760
Query 791 TCCCCTTTGATCAGTTTGCGGCATGGAATCAAGCACCGTCGTTTGCAGATCCAATGATGT 850
||| |||||||||||||||| |||||||||||||||| || ||| |||||||||||||||
Sbjct 761 TCCACTTTGATCAGTTTGCGCCATGGAATCAAGCACCATCTTTTACAGATCCAATGATGT 820
Query 851 TCCCTTATAATTAG 864
|| |||||||||||
Sbjct 821 TCTCTTATAATTAG 834
> Ahg942291 jgi|Araly1|942291|scaffold_602835.1
Length=859
Score = 957 bits (518), Expect = 0.0
Identities = 740/841 (88%), Gaps = 40/841 (5%)
Strand=Plus/Plus
Query 1 ATGGATTCTTCAATGTCGACGAAGAAGAAAACCAAATTGTCTGTGAGAAACCAAACTTGT 60
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 21 ATGGATTCTTCAATGTCGACGAAGAAGAAAACTAAATTGTCTCTGAGAAACCAAACTTGT 80
Query 61 TTCAAGAAATCGTCCCTGTCTTCTTCTTCTACTGCAAAAAAGACCACGAATTTGTCTATG 120
|||||||||||||| || || |||||||||||||||||||||||||||| |||||||||
Sbjct 81 TTCAAGAAATCGTCTCT--CT-CTTCTTCTACTGCAAAAAAGACCACGAACTTGTCTATG 137
Query 121 AGAGAACAGACCATGTTCAAGAAAGCCTTGGAGCTTTCAACTCTGTGCAACATCGATGTC 180
|||||| |||| ||||| ||||||||||| |||||||||||||||||| ||||||| |||
Sbjct 138 AGAGAAGAGACTATGTTTAAGAAAGCCTTCGAGCTTTCAACTCTGTGCGACATCGAAGTC 197
Query 181 TGTGTCATATACTATGGTCGTGACGGAAAACTCATCAAGACATGGCCGGAGGATCAATCA 240
||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 198 TGTGTCATATATTATGGTCGTGACGGAGAACTCATCAAGACATGGCCGGAGGATCAATCC 257
Query 241 AAAGTTCGAGACATGGCTGAGAGGTTTAGCAGATTACACGAGAGAGAGCGATGCAAGAAA 300
|| |||||||||||||||||||| |||| || | || |||| |||||| || ||||||||
Sbjct 258 AAGGTTCGAGACATGGCTGAGAGATTTACCAAACTAAACGACAGAGAGAGACGCAAGAAA 317
Query 301 AGAACCAACCTTTCTCTGTTTCTACGTAAGAAGATCCTCGACGACACTAAATTGTCGGAG 360
|| || |||||||||||||| ||| | ||||||||||||||||||| ||| | | ||||
Sbjct 318 AGCACAAACCTTTCTCTGTTGCTAAGGAAGAAGATCCTCGACGACAATAAGCTCTTGGAG 377
Query 361 AAAGTCTTAGAGATGGAGGATTCGTTAGAAAGTGGTCTACGAGTACTACAAGATAAGCTT 420
||||| ||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 378 AAAGTGTTAGAGATGAAGGATTCGTTAGAAAGTGGTCTACGGGTATTACAAGATAAGCTT 437
Query 421 CTGTTACTCCAACCCGAGAAAAACCAGACCGAGTTTGGTCAGACCCGTGCGGTTTCTTCC 480
|||||||||||||| ||||| ||||| |||||| ||||||| ||||| ||||||||||
Sbjct 438 CTGTTACTCCAACCAGAGAA---CCAGATCGAGTTAGGTCAGAGCCGTGTGGTTTCTTCC 494
Query 481 ACAACGAATCCATTGTCTCCTCCTCCTTCGCTAATTGAGGATCATCGTCATCAACAATGG 540
|||||||||||||||||| | |||| | | | | |||||| |||||||||||
Sbjct 495 ACAACGAATCCATTGTCTT-T--TCCT--G-T----G-G-ATCATC---ATCAACAATGG 539
Query 541 ACAGAACCATTGATGAGTGGTGTGTCAAACACAGAGCAAGACCTATCGACGTCATCATTG 600
||| |||||||| | | ||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 540 ACAAAACCATTGGTCAATGGTGTGCCAAACGCAGAGAAAGACCTATCGACGTCATCATTG 599
Query 601 AGTCAAAATCAGAGCAGAATTT-CAGTCTTTCTCTATAACCATGACAACCGTAGCTTCTA 659
| |||| ||||||||| ||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 600 AATCAACATCAGAGCA-AATTTTCAGTCTTTCTCTATAACCATGACAATGGTAGCTTCTA 658
Query 660 TCAAGTCCCTGACTCAGTTTCTAGCTTTGACCAATCG--G----C---TTTACTTGGGGA 710
||||||||| ||||| ||||||||||||||||||||| | | |||||||||||
Sbjct 659 TCAAGTCCCAGACTCTGTTTCTAGCTTTGACCAATCGACGAGTACGGCTTTACTTGGGGC 718
Query 711 ACAAGGATCTGGTCT-AGGAAGTAACTTTGATCTTCCTCCCATGGTTTTTCCTCCTCAGA 769
||||||||||||||| || |||||||||||||||||| | ||||| |||||||||||||
Sbjct 719 ACAAGGATCTGGTCTTAG-AAGTAACTTTGATCTTCC-C--ATGGTGTTTCCTCCTCAGA 774
Query 770 TGCAGACACAAAC-CC-C-ACTTGTCCCCTTTGATCAGTTTGCGGCATGGAATCAAGCAC 826
|||||| |||| | || | |||||||| |||||||||||||||| |||||||||||||||
Sbjct 775 TGCAGAAACAAGCTCCACCACTTGTCCTCTTTGATCAGTTTGCGCCATGGAATCAAGCAC 834
Query 827 C 827
|
Sbjct 835 C 835
> Ahg489614 jgi|Araly1|489614|fgenesh2_kg.6__2748__AT5G27944.1
Length=651
Score = 808 bits (437), Expect = 0.0
Identities = 600/675 (89%), Gaps = 26/675 (4%)
Strand=Plus/Plus
Query 1 ATGGATTCTTCAATGTCGACGAAGAAGAAAACCAAATTGTCTGTGAGAAACCAAACTTGT 60
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 1 ATGGATTCTTCAATGTCGACGAAGAAGAAAACTAAATTGTCTCTGAGAAACCAAACTTGT 60
Query 61 TTCAAGAAATCGTCCCTGTCTTCTTCTTCTACTGCAAAAAAGACCACGAATTTGTCTATG 120
|||||||||||||| || || |||||||||||||||||||||||||||| |||||||||
Sbjct 61 TTCAAGAAATCGTCTCT--CT-CTTCTTCTACTGCAAAAAAGACCACGAACTTGTCTATG 117
Query 121 AGAGAACAGACCATGTTCAAGAAAGCCTTGGAGCTTTCAACTCTGTGCAACATCGATGTC 180
|||||| |||| ||||| ||||||||||| |||||||||||||||||| ||||||| |||
Sbjct 118 AGAGAAGAGACTATGTTTAAGAAAGCCTTCGAGCTTTCAACTCTGTGCGACATCGAAGTC 177
Query 181 TGTGTCATATACTATGGTCGTGACGGAAAACTCATCAAGACATGGCCGGAGGATCAATCA 240
||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 178 TGTGTCATATATTATGGTCGTGACGGAGAACTCATCAAGACATGGCCGGAGGATCAATCC 237
Query 241 AAAGTTCGAGACATGGCTGAGAGGTTTAGCAGATTACACGAGAGAGAGCGATGCAAGAAA 300
|| |||||||||||||||||||| |||| || | || |||| |||||| || ||||||||
Sbjct 238 AAGGTTCGAGACATGGCTGAGAGATTTACCAAACTAAACGACAGAGAGAGACGCAAGAAA 297
Query 301 AGAACCAACCTTTCTCTGTTTCTACGTAAGAAGATCCTCGACGACACTAAATTGTCGGAG 360
|| || |||||||||||||| ||| | ||||||||||||||||||| ||| | ||||||
Sbjct 298 AGCACAAACCTTTCTCTGTTGCTAAGGAAGAAGATCCTCGACGACAATAAGCTCTCGGAG 357
Query 361 AAAGTCTTAGAGATGGAGGATTCGTTAGAAAGTGGTCTACGAGTACTACAAGATAAGCTT 420
||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 358 AAAGTCTTAGAGATGAAGGATTCGTTAGAAAGTGGTCTACGGGTATTACAAGATAAGCTT 417
Query 421 CTGTTACTCCAACCCGAGAAAAACCAGACCGAGTTTGGTCAGACCCGTGCGGTTTCTTCC 480
|||||||||||||||||| ||| | |||||| ||||||| ||||| ||||||||||
Sbjct 418 AAGTTACTCCAACCCGAGAA---CCAAATCGAGTTAGGTCAGAGCCGTGTGGTTTCTTCC 474
Query 481 ACAACGAATCCATTGTCTCCTCCTCCTTCGCTAATTGAGGATCATCGTCATCAACAATGG 540
|||||||||||||||||| || ||||||||||||||||||||||| ||| |||||||
Sbjct 475 ACAACGAATCCATTGTCT--TC-TCCTTCGCTAATTGAGGATCATCATCAACAACAAT-- 529
Query 541 ACAGAACCATTGATGAGTGGTGTGTCAAACACAGAGCAAGACCTATCGACGTCATCATTG 600
|| ||||||||| | |||||||||||||||| ||||||||||||||||||
Sbjct 530 -CA---CCATTGATG--T-------CAAACACAGAGCAAGAGCTATCGACGTCATCATTG 576
Query 601 AGTCAAAATCAGAGCAGAATTT-CAGTCTTTCTCTATAACCATGACAACCGTAGCTTCTA 659
|||||| ||||||||| ||||| |||||||||||||||||||||||||| |||||||||
Sbjct 577 AGTCAACATCAGAGCA-AATTTTCAGTCTTTCTCTATAACCATGACAACGGTAGCTTCTG 635
Query 660 TCAAGTCCCTGACTC 674
|||| ||||| ||||
Sbjct 636 TCAACTCCCTAACTC 650
> Ahg489532 jgi|Araly1|489532|fgenesh2_kg.6__2666__AT5G27945.1
Length=1290
Score = 324 bits (175), Expect = 8e-88
Identities = 254/289 (88%), Gaps = 18/289 (6%)
Strand=Plus/Minus
Query 310 CTTTCTCTGTTTCTACGTAAGAAGATCCTCGACGACACTAAATTGTCGGAGAAAGTCTTA 369
||||||||||| ||||||||||||||||||||||||| ||| | ||||||||||| |||
Sbjct 271 CTTTCTCTGTTACTACGTAAGAAGATCCTCGACGACAGTAAGCTCTCGGAGAAAGTGTTA 212
Query 370 GAGATGGAGGATTCGTTAGAAAGTGGTCTACGAGTACTACAAGATAAGCTTCTGTTACTC 429
|||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 211 GAGATGAAGGATTCGTTAGAAAGTGGTCTACGGGTATTACAAGATAAGCTTCTGTTACTC 152
Query 430 CAACCCGAGAAAAACCAGACCGAGTTTGGTCAGACCCGTGCGGTTTCTTCCACAACGAAT 489
||||| ||||| |||||||||||| ||||||| ||||| ||||||||||||||||||
Sbjct 151 CAACCAGAGAA---CCAGACCGAGTTAGGTCAGAGACGTGCCGTTTCTTCCACAACGAAT 95
Query 490 CCATTGTCTCCTCCTCCTTCGCTAATTGAGGATCATCGTCATCAACAATGGACAGAACCA 549
||||||||| || |||| | | | | |||||| ||||||||||||||||||||
Sbjct 94 CCATTGTCT--TC-TCCT--G-T----G-G-ATCATC---ATCAACAATGGACAGAACCA 50
Query 550 TTGATGAGTGGTGTGTCAAACACAGAGCAAGACCTATCGACGTCATCAT 598
||| ||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 49 TTGGTGAATGGTGTGTCAAACACAGAGCAAGAGCTATCGACGTCATCAT 1
Score = 126 bits (68), Expect = 2e-28
Identities = 78/83 (94%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 1 ATGGATTCTTCAATGTCGACGAAGAAGAAAACCAAATTGTCTGTGAGAAACCAAACTTGT 60
|||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||
Sbjct 356 ATGGATTCTTCAATGTCGACGAAGAAGAAAACCAAACTCTCTCTGAGAAACCAAACTTGT 297
Query 61 TTCAAGAAATCGTCCCTGTCTTC 83
|||||||||||||| || |||||
Sbjct 296 TTCAAGAAATCGTCTCTCTCTTC 274
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31985127363
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5