BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27100.1
Length=2829
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491571 jgi|Araly1|491571|fgenesh2_kg.7__1004__AT5G27100.1 2802 0.0
> Ahg491571 jgi|Araly1|491571|fgenesh2_kg.7__1004__AT5G27100.1
Length=2744
Score = 2802 bits (1517), Expect = 0.0
Identities = 1804/1940 (93%), Gaps = 30/1940 (2%)
Strand=Plus/Plus
Query 900 TTAGATCTCGATGGACGAAGAGATTCCCAATTTCTGACCTGAACGTATATGGATTATGGG 959
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 825 TTATATCTCGATGGACGAAGAGA-TCCCAATTTCTGACCTGAACGTATATGGATTGTGGG 883
Query 960 CATATGATGCCACCACTGCATTGGCATTGGCCATCGAAGAAGCTGGGACATCAAATTTGA 1019
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 884 CATATGATGCCACCACTGCACTGGCATTGGCCATGGAAGAAGCTGGGACATCAAATTTGA 943
Query 1020 CATTTGTCAAGATGGATGCCAAGAGGAACGTGTCTGAACTCCAGGGTCTAGGTGTATCTC 1079
| ||| |||||| |||||||| |||||||||||||||||| || || |||||| ||||||
Sbjct 944 CCTTTTTCAAGACGGATGCCATGAGGAACGTGTCTGAACTTCAAGGACTAGGTTTATCTC 1003
Query 1080 AATATGGTCCAAAACTTCTCCAGACGCTCTCTCGAGTTCGGTTCCAAGGTCTTGCTGGTG 1139
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1004 AATATGGTCCAAAACTTCTCCAGACACTCTCTCGAGTTCGGTTCCAAGGTCTTGCTGGTG 1063
Query 1140 ATTTCCAATTTATCAATGGAGAATTGCAGCCATCAGTCTTTGAGATTGTTAATGTGAATG 1199
|||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||
Sbjct 1064 ATTTCCAATTTATCAATGCAGAACTACAGCCATCAGTCTTTGAGATTGTTAATGTGAATG 1123
Query 1200 GGCAAGGAGGAAGGACCATAGGATTCTGGATGAAAGAGTATGGTCTCTTTAAGAACGTGG 1259
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1124 GGCAAGGAGGAAGGACCATAGGATTCTGGATGAAAGAGTATGGTCTATTGAAGAACGTGG 1183
Query 1260 ACCAAAAACCAGCTAGCAAGACCACTTTCTCTTCTTGGCAAGATCGACTCAGACCAATTA 1319
|||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184 ACCAAAAACCAGATACCGAGACCACTTTCTCTTCTTGGCAAGATCGACTCAGACCAATTA 1243
Query 1320 TATGGCCTGGAGACACTACTTCCGTACCCAAAGGATGGGAAATCCCGACAAATGGGAAAA 1379
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1244 TATGGCCTGGAGACACTACTTCCGTACCCAAAGGATGGGAGATCCCGACAAATGGGAAAA 1303
Query 1380 GGCTGCAGATAGGCGTCCCAGTTAATAACACTTTTCAACAATTTGTGAAA-GCTACTAGG 1438
|||||| ||||| ||||||||||| |||| ||||||||||||||| ||| ||||| |||
Sbjct 1304 GGCTGCGGATAGAAGTCCCAGTTAAGAACAGTTTTCAACAATTTGT-AAAGGCTACAAGG 1362
Query 1439 GATCCTATCACCAATTCAACAATTTTCAGTGGATTCAGCATCGACTACTTTGAGGCTGTA 1498
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 1363 GATCCTATCACCAATTCAACAATTTTCAGTGGATTCTGCATTGACTACTTTGAGGCTGTA 1422
Query 1499 ATTCAAGCGATTCCCTATGATATTTCCTATGACTTCATTCCTTTCCAAGATGGTGGTTAT 1558
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 1423 ATTCAAGCGATGCCCTATGATGTTTCCTATGACTTCATTCCTTTCCAAGATGGTGATTAT 1482
Query 1559 GATGCCTTAGTCTACCAAGTGTATCTTGGGAAATATGATGCTGTTGTGGCAGATACAACA 1618
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1483 GATACCTTAGTCTACCAAGTGTATCTTGGGAAATATGATGCTGTGGTGGCAGATACAACA 1542
Query 1619 ATATCGTCAAATAGGTCAATGTATGTTGATTTCTCATTGCCATACACACCATCAGGCGTA 1678
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1543 ATATCGGCAAATAGGTCAATGTATGTTGATTTCTCATTGCCATACACACCATCAGGCGTA 1602
Query 1679 GGTCTTGTCGTCCCTGTTAAAGACAGTGTTAGAAGAAGCAGTACCATCTTTTTGATGCCT 1738
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1603 GGTCTGGTCGTCCCTGTTAAAGACAGTGTTAGAAGAAGCAGTACCATCTTTTTGATGCCT 1662
Query 1739 TTGACTTTGGCACTTTGGCTAATCAGCCTTTTGTCCTTTTTCATTATTGGTCTTGTCGTA 1798
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1663 TTGACTTTGGCACTTTGGCTAATCAGCCTTTTGTCCTTTTTCATTATTGGCCTTGTCGTA 1722
Query 1799 TGGGTTCTTGAACATAGGGTAAATCCAGACTTTGATGGGCCTGGCCAGTATCAACTCAGC 1858
|||||| |||||||||||||||| |||||||||| ||||||||||||||||||| |||||
Sbjct 1723 TGGGTTGTTGAACATAGGGTAAACCCAGACTTTGGTGGGCCTGGCCAGTATCAAATCAGC 1782
Query 1859 ACTATCTTCTGGTTTTCTTTCTCCATTATGGTCTTTGCGCCGAGAGAACGAGTGCTTAGC 1918
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1783 ACTATCTTCTGGTTTGCTTTCTCCATTATGGTCTTTGCGCCGAGAGAAAGAGTGCTTAGC 1842
Query 1919 TTCTGGGCAAGGGTCGTGGTTATCATTTGGTACTTCTTAGTACTTGTGTTAACT-CAGAG 1977
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||| | |||
Sbjct 1843 TTCTGGGCAAGGCTCGTGGTTATCATTTGGTACTTCTTAGTACTTGTGTTGACTTC-GAG 1901
Query 1978 TTACACTGCTAGTTTGGCGTCGCTTCTTACAACACAACACCTTCATCCAACGGTAACCAA 2037
|||||||||||||||||| |||||||||||| |||| || ||||||||||||||||||||
Sbjct 1902 TTACACTGCTAGTTTGGCATCGCTTCTTACATCACAGCAGCTTCATCCAACGGTAACCAA 1961
Query 2038 TATAAATAGCTTGCTGGCAAAAGGAGAATCTGTTGGATATCAAAG---TTCTTTCATTTT 2094
|||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||
Sbjct 1962 CATAAATAGCTTGCTGGCAAAAGGAGAATCTGTGGGATATCAAAGAAGTTCCTTCATTTT 2021
Query 2095 GGGAAGACTCAGGGACTCAGGTTTCTCAGAGGCTAGTCTTGTATCCTATGGGTCACCAGA 2154
|| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2022 GGAAAGACTCAGAGACTCAGGTTTCTCAGAGACTAGTCTTGTATCCTATGGGTCACCAGA 2081
Query 2155 ACACTGTGATGCGCTACTGAGCAAAGGACAAGCAGAAGGTGGTGTTTCTGCGGTTTTAAT 2214
| ||||||||||||||||||||||||||| |||||| |||||| ||||||||| ||| ||
Sbjct 2082 AAACTGTGATGCGCTACTGAGCAAAGGACCAGCAGAGGGTGGTATTTCTGCGGCTTTCAT 2141
Query 2215 GGAAGTACCTTACGTGAGAATTTTTCTGGGACAATACTGTAACAAGTACAAAATGGTTCA 2274
|||||||||||||||||||| |||||| |||||||||||||||||||| ||| |||||||
Sbjct 2142 GGAAGTACCTTACGTGAGAACTTTTCTTGGACAATACTGTAACAAGTATAAACTGGTTCA 2201
Query 2275 AACTCCGTTCAAGGTCGATGGATTAGGCTTTGTCTTTCCCATTGGATCCCCTCTAGTGGC 2334
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2202 AACACCGTTCAAGGTCGATGGATTAGGCTTCGTCTTTCCCATTGGATCCCCTCTAGTGGC 2261
Query 2335 TGATATTTCAAGGGCCATTCTAAAAGTGGAAGAGTCGAACAAGGCAAACCAACTCGAGAA 2394
||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||
Sbjct 2262 TGATATTTCAAGGGCCATTCTGAAAGTGGAAGAGTCAAACAAGGCAAACGAACTCGAGAA 2321
Query 2395 TGCATGGTTCAAGCCAATCGATGAAAGCTGCCCAGATCCACTCACCAACCCCGATCCAAA 2454
|||||||||||||||||| |||||||| ||||||||||| ||||| ||||| ||||||||
Sbjct 2322 TGCATGGTTCAAGCCAATAGATGAAAGTTGCCCAGATCCGCTCACTAACCCTGATCCAAA 2381
Query 2455 TCCTTCAGTATCCTTCCGGCAACTTGGCTTTGATAGTTTTTGGGTTTTATTCCTTGTTGC 2514
|| |||||||||||||| |||||||||||||||||||||||||||||||| |||| |||
Sbjct 2382 CCCCTCAGTATCCTTCCGCCAACTTGGCTTTGATAGTTTTTGGGTTTTATTTCTTGCTGC 2441
Query 2515 CGCCATAGTTTGCACTATGGCATTGTTGAA-ATTTGTGTATCAATTCTTGAAGGAGAACC 2573
||||||||||||| |||| |||||| | | || ||||| ||||||||||||||||||||
Sbjct 2442 CGCCATAGTTTGCGCTATAGCATTGG-GTATATCTGTGTGTCAATTCTTGAAGGAGAACC 2500
Query 2574 CAAATCAAAGGAACCTGCGAGTATTGTGGGAAAAGTTCAATGA-GCCGGATCAAAAGTCA 2632
|| ||||||| ||| ||||||||||||||||||||||||| | ||| ||||||||||||
Sbjct 2501 CAGATCAAAGAAACATGCGAGTATTGTGGGAAAAGTTCAAA-ACGCCAGATCAAAAGTCA 2559
Query 2633 TACATAAAAGATGTGACGAAATGTCAATGCTCCTCAGGTCAAGGCATGCCAAAGAATGGC 2692
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2560 TACATAAAAGAGGTGACGAAATGTCAATGCTCCTCAGGTCAAGGCATGCCAAAGAATGAC 2619
Query 2693 CAAGAAGGAGCAAACGCAGTAA-ACAATGGCAATTAAAGTTAGCACAT-CT-ATTGTTTT 2749
||||||||||||||| ||| || || ||| |||| ||||||||||| | | || ||||
Sbjct 2620 CAAGAAGGAGCAAACCCAG-AACACCATGACAATCAAAGTTAGCAC-TGCACATC-TTTT 2676
Query 2750 CCTTTCTTATTTCAAACAAAGGTTTCATTACATCTTTGAAAATTCCAAACAAAAGAGACA 2809
|||| | || | || |||||||||||||||||| ||||||||||||||||
Sbjct 2677 GTTTTCCT-TT-C---------TT-CATTACATCTTTGAAAATCCCAAACAAAAGAGACA 2724
Query 2810 CCTCCGAGGATCCTGATGAT 2829
| ||| ||||||||||||||
Sbjct 2725 CTTCCTAGGATCCTGATGAT 2744
Score = 1242 bits (672), Expect = 0.0
Identities = 797/853 (93%), Gaps = 26/853 (3%)
Strand=Plus/Plus
Query 20 AAAATGAAGAGAGAAAACAACCTCGTTCTCAGCTTACTCTTCTTTGTAATCGTCTTCCTG 79
|||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1 AAAATGAAGAGACAAAACAACCTCGTTCTCAGCTTGCTCTTCTTTGTCATCGTCTTCCTG 60
Query 80 ATGCAGGTCGGAGAAGCACAAAATAGGATAACCAATGTAAATGTGGGAATCGTGAATGAT 139
||||| ||||||||||||||||| ||| |||| ||||||||||||| |||||||| |||
Sbjct 61 ATGCAAGTCGGAGAAGCACAAAAGAGGGCAACCGATGTAAATGTGGGGATCGTGAACGAT 120
Query 140 ATCGGAACGGCTTACTCCAACATGACTTTGCTCTGTATCAACATGTCTCTTTCTGATTTC 199
|||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 GTCGGAATGGCATACTCCAACATGACTTTGCTCTGTATCAACATGTCTCTCTCTGATTTC 180
Query 200 TACTCTTCTCATCCAGAAACCCAAACAAGGCTTGTAACCACCGTTGTTGACTCCAAAAAT 259
|||||||||||| |||||||||| |||||||||||||||||| ||| |||||||||||||
Sbjct 181 TACTCTTCTCATACAGAAACCCAGACAAGGCTTGTAACCACCATTG-TGACTCCAAAAAT 239
Query 260 GATGTTGTTACCGCAGCAGCAGCAGCTCTTGATCTGATAACGAACAAGGAAGTGAAAGCG 319
||||||||| | | ||||||| | | | || |||||||||||||
Sbjct 240 GATGTTGTT-----ATC-GCAGCAG--C---A---G----CG-----GGAAGTGAAAGCG 276
Query 320 ATTCTAGGGCCATGGACTTCGATGCAGGCTCAATTCATGATTGAGATGGGACAAAAATCT 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 277 ATTCTAGGGCCATGGACTTCGATGCAGGCTCAATTCATGATTGAGATGGGACAAAAATCT 336
Query 380 CAGGTGCCGATTGTTACGTATTCTGCAACAAGTCCGTCCCTCGCTTCCATCCGTAGTCAA 439
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 337 CAGGTGCCGATTGTTACATATTCTGCAACAAGTCCGTCCCTTGCTTCCATCCGTAGTCAA 396
Query 440 TACTTCTTTCGGGCTACGTATGATGATTCATCTCAAGTGCACGCCATTAAAGAAATCATC 499
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 397 TACTTCTTTCGGGCTACGTATGATGATTCATCTCAAGTGCACGCCATCAAAGAAATCATC 456
Query 500 AAACTTTTTGGTTGGAGAGAGGTTGCACCTGTATATGTTGACGACACATTTGGCGAAGGT 559
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 457 AAACTTTTTGGGTGGAGAGAGGTTGCACCTGTATACGTTGACGACACATTTGGCGAAGGT 516
Query 560 ATAATGCCTCGTCTTACAGATGTGTTACAAGAGATTAACGTTCGTATACCTTATAGGACC 619
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 517 ATAATGCCTCGTCTTACAGATGCGTTACAAGAGATTAACGTCCGTATACCTTATAGGACC 576
Query 620 GTGATCTCTCCCAATGCCACGGATGATGAAATATCTGTGGAACTTCTCCGGATGATGACT 679
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 577 GTGATCTCTCCCAATGCCACGGATGATGAAATCTCTGTGGAACTTTTCCGGATGATGACT 636
Query 680 CTACCCACTAGAGTATTTGTTGTCCAC-CTTGTTGAATTGCTTGCCTCAAGATTTTTTGC 738
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 637 CTACCCACTAGAGTATTTGTTGTCCACACT-GTTGAATTGCTTGCCTCAAGATTTTTTGC 695
Query 739 GAAAGCTACGGAAATTGGTTTGATGAAACAAGGATATGTCTGGATCCTCACCAACACAAT 798
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 696 GAAAGCAACGGAAATTGGTTTGATGAAACAAGGATATGTCTGGATCCTCACCAACGCAAT 755
Query 799 TACCGATGTTCTAAGTATCATGAACGAGACGGAAATTGAAACAATGCAAGGGGTATTGGG 858
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 756 TACCGATGTTCTAAATATCATGAACGAGACGGAAATTGAAACAATGCAAGGGGTATTGGG 815
Query 859 TGTAAAGACTTAT 871
|||||||||||||
Sbjct 816 TGTAAAGACTTAT 828
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106766956735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5