BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G27100.1 Length=2829 Score E Sequences producing significant alignments: (Bits) Value Ahg491571 jgi|Araly1|491571|fgenesh2_kg.7__1004__AT5G27100.1 2802 0.0 > Ahg491571 jgi|Araly1|491571|fgenesh2_kg.7__1004__AT5G27100.1 Length=2744 Score = 2802 bits (1517), Expect = 0.0 Identities = 1804/1940 (93%), Gaps = 30/1940 (2%) Strand=Plus/Plus Query 900 TTAGATCTCGATGGACGAAGAGATTCCCAATTTCTGACCTGAACGTATATGGATTATGGG 959 ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| Sbjct 825 TTATATCTCGATGGACGAAGAGA-TCCCAATTTCTGACCTGAACGTATATGGATTGTGGG 883 Query 960 CATATGATGCCACCACTGCATTGGCATTGGCCATCGAAGAAGCTGGGACATCAAATTTGA 1019 |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct 884 CATATGATGCCACCACTGCACTGGCATTGGCCATGGAAGAAGCTGGGACATCAAATTTGA 943 Query 1020 CATTTGTCAAGATGGATGCCAAGAGGAACGTGTCTGAACTCCAGGGTCTAGGTGTATCTC 1079 | ||| |||||| |||||||| |||||||||||||||||| || || |||||| |||||| Sbjct 944 CCTTTTTCAAGACGGATGCCATGAGGAACGTGTCTGAACTTCAAGGACTAGGTTTATCTC 1003 Query 1080 AATATGGTCCAAAACTTCTCCAGACGCTCTCTCGAGTTCGGTTCCAAGGTCTTGCTGGTG 1139 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1004 AATATGGTCCAAAACTTCTCCAGACACTCTCTCGAGTTCGGTTCCAAGGTCTTGCTGGTG 1063 Query 1140 ATTTCCAATTTATCAATGGAGAATTGCAGCCATCAGTCTTTGAGATTGTTAATGTGAATG 1199 |||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||| Sbjct 1064 ATTTCCAATTTATCAATGCAGAACTACAGCCATCAGTCTTTGAGATTGTTAATGTGAATG 1123 Query 1200 GGCAAGGAGGAAGGACCATAGGATTCTGGATGAAAGAGTATGGTCTCTTTAAGAACGTGG 1259 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 1124 GGCAAGGAGGAAGGACCATAGGATTCTGGATGAAAGAGTATGGTCTATTGAAGAACGTGG 1183 Query 1260 ACCAAAAACCAGCTAGCAAGACCACTTTCTCTTCTTGGCAAGATCGACTCAGACCAATTA 1319 |||||||||||| || | |||||||||||||||||||||||||||||||||||||||||| Sbjct 1184 ACCAAAAACCAGATACCGAGACCACTTTCTCTTCTTGGCAAGATCGACTCAGACCAATTA 1243 Query 1320 TATGGCCTGGAGACACTACTTCCGTACCCAAAGGATGGGAAATCCCGACAAATGGGAAAA 1379 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1244 TATGGCCTGGAGACACTACTTCCGTACCCAAAGGATGGGAGATCCCGACAAATGGGAAAA 1303 Query 1380 GGCTGCAGATAGGCGTCCCAGTTAATAACACTTTTCAACAATTTGTGAAA-GCTACTAGG 1438 |||||| ||||| ||||||||||| |||| ||||||||||||||| ||| ||||| ||| Sbjct 1304 GGCTGCGGATAGAAGTCCCAGTTAAGAACAGTTTTCAACAATTTGT-AAAGGCTACAAGG 1362 Query 1439 GATCCTATCACCAATTCAACAATTTTCAGTGGATTCAGCATCGACTACTTTGAGGCTGTA 1498 |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| Sbjct 1363 GATCCTATCACCAATTCAACAATTTTCAGTGGATTCTGCATTGACTACTTTGAGGCTGTA 1422 Query 1499 ATTCAAGCGATTCCCTATGATATTTCCTATGACTTCATTCCTTTCCAAGATGGTGGTTAT 1558 ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||| Sbjct 1423 ATTCAAGCGATGCCCTATGATGTTTCCTATGACTTCATTCCTTTCCAAGATGGTGATTAT 1482 Query 1559 GATGCCTTAGTCTACCAAGTGTATCTTGGGAAATATGATGCTGTTGTGGCAGATACAACA 1618 ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1483 GATACCTTAGTCTACCAAGTGTATCTTGGGAAATATGATGCTGTGGTGGCAGATACAACA 1542 Query 1619 ATATCGTCAAATAGGTCAATGTATGTTGATTTCTCATTGCCATACACACCATCAGGCGTA 1678 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1543 ATATCGGCAAATAGGTCAATGTATGTTGATTTCTCATTGCCATACACACCATCAGGCGTA 1602 Query 1679 GGTCTTGTCGTCCCTGTTAAAGACAGTGTTAGAAGAAGCAGTACCATCTTTTTGATGCCT 1738 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1603 GGTCTGGTCGTCCCTGTTAAAGACAGTGTTAGAAGAAGCAGTACCATCTTTTTGATGCCT 1662 Query 1739 TTGACTTTGGCACTTTGGCTAATCAGCCTTTTGTCCTTTTTCATTATTGGTCTTGTCGTA 1798 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1663 TTGACTTTGGCACTTTGGCTAATCAGCCTTTTGTCCTTTTTCATTATTGGCCTTGTCGTA 1722 Query 1799 TGGGTTCTTGAACATAGGGTAAATCCAGACTTTGATGGGCCTGGCCAGTATCAACTCAGC 1858 |||||| |||||||||||||||| |||||||||| ||||||||||||||||||| ||||| Sbjct 1723 TGGGTTGTTGAACATAGGGTAAACCCAGACTTTGGTGGGCCTGGCCAGTATCAAATCAGC 1782 Query 1859 ACTATCTTCTGGTTTTCTTTCTCCATTATGGTCTTTGCGCCGAGAGAACGAGTGCTTAGC 1918 ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1783 ACTATCTTCTGGTTTGCTTTCTCCATTATGGTCTTTGCGCCGAGAGAAAGAGTGCTTAGC 1842 Query 1919 TTCTGGGCAAGGGTCGTGGTTATCATTTGGTACTTCTTAGTACTTGTGTTAACT-CAGAG 1977 |||||||||||| ||||||||||||||||||||||||||||||||||||| ||| | ||| Sbjct 1843 TTCTGGGCAAGGCTCGTGGTTATCATTTGGTACTTCTTAGTACTTGTGTTGACTTC-GAG 1901 Query 1978 TTACACTGCTAGTTTGGCGTCGCTTCTTACAACACAACACCTTCATCCAACGGTAACCAA 2037 |||||||||||||||||| |||||||||||| |||| || |||||||||||||||||||| Sbjct 1902 TTACACTGCTAGTTTGGCATCGCTTCTTACATCACAGCAGCTTCATCCAACGGTAACCAA 1961 Query 2038 TATAAATAGCTTGCTGGCAAAAGGAGAATCTGTTGGATATCAAAG---TTCTTTCATTTT 2094 |||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||| Sbjct 1962 CATAAATAGCTTGCTGGCAAAAGGAGAATCTGTGGGATATCAAAGAAGTTCCTTCATTTT 2021 Query 2095 GGGAAGACTCAGGGACTCAGGTTTCTCAGAGGCTAGTCTTGTATCCTATGGGTCACCAGA 2154 || ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 2022 GGAAAGACTCAGAGACTCAGGTTTCTCAGAGACTAGTCTTGTATCCTATGGGTCACCAGA 2081 Query 2155 ACACTGTGATGCGCTACTGAGCAAAGGACAAGCAGAAGGTGGTGTTTCTGCGGTTTTAAT 2214 | ||||||||||||||||||||||||||| |||||| |||||| ||||||||| ||| || Sbjct 2082 AAACTGTGATGCGCTACTGAGCAAAGGACCAGCAGAGGGTGGTATTTCTGCGGCTTTCAT 2141 Query 2215 GGAAGTACCTTACGTGAGAATTTTTCTGGGACAATACTGTAACAAGTACAAAATGGTTCA 2274 |||||||||||||||||||| |||||| |||||||||||||||||||| ||| ||||||| Sbjct 2142 GGAAGTACCTTACGTGAGAACTTTTCTTGGACAATACTGTAACAAGTATAAACTGGTTCA 2201 Query 2275 AACTCCGTTCAAGGTCGATGGATTAGGCTTTGTCTTTCCCATTGGATCCCCTCTAGTGGC 2334 ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 2202 AACACCGTTCAAGGTCGATGGATTAGGCTTCGTCTTTCCCATTGGATCCCCTCTAGTGGC 2261 Query 2335 TGATATTTCAAGGGCCATTCTAAAAGTGGAAGAGTCGAACAAGGCAAACCAACTCGAGAA 2394 ||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||| Sbjct 2262 TGATATTTCAAGGGCCATTCTGAAAGTGGAAGAGTCAAACAAGGCAAACGAACTCGAGAA 2321 Query 2395 TGCATGGTTCAAGCCAATCGATGAAAGCTGCCCAGATCCACTCACCAACCCCGATCCAAA 2454 |||||||||||||||||| |||||||| ||||||||||| ||||| ||||| |||||||| Sbjct 2322 TGCATGGTTCAAGCCAATAGATGAAAGTTGCCCAGATCCGCTCACTAACCCTGATCCAAA 2381 Query 2455 TCCTTCAGTATCCTTCCGGCAACTTGGCTTTGATAGTTTTTGGGTTTTATTCCTTGTTGC 2514 || |||||||||||||| |||||||||||||||||||||||||||||||| |||| ||| Sbjct 2382 CCCCTCAGTATCCTTCCGCCAACTTGGCTTTGATAGTTTTTGGGTTTTATTTCTTGCTGC 2441 Query 2515 CGCCATAGTTTGCACTATGGCATTGTTGAA-ATTTGTGTATCAATTCTTGAAGGAGAACC 2573 ||||||||||||| |||| |||||| | | || ||||| |||||||||||||||||||| Sbjct 2442 CGCCATAGTTTGCGCTATAGCATTGG-GTATATCTGTGTGTCAATTCTTGAAGGAGAACC 2500 Query 2574 CAAATCAAAGGAACCTGCGAGTATTGTGGGAAAAGTTCAATGA-GCCGGATCAAAAGTCA 2632 || ||||||| ||| ||||||||||||||||||||||||| | ||| |||||||||||| Sbjct 2501 CAGATCAAAGAAACATGCGAGTATTGTGGGAAAAGTTCAAA-ACGCCAGATCAAAAGTCA 2559 Query 2633 TACATAAAAGATGTGACGAAATGTCAATGCTCCTCAGGTCAAGGCATGCCAAAGAATGGC 2692 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 2560 TACATAAAAGAGGTGACGAAATGTCAATGCTCCTCAGGTCAAGGCATGCCAAAGAATGAC 2619 Query 2693 CAAGAAGGAGCAAACGCAGTAA-ACAATGGCAATTAAAGTTAGCACAT-CT-ATTGTTTT 2749 ||||||||||||||| ||| || || ||| |||| ||||||||||| | | || |||| Sbjct 2620 CAAGAAGGAGCAAACCCAG-AACACCATGACAATCAAAGTTAGCAC-TGCACATC-TTTT 2676 Query 2750 CCTTTCTTATTTCAAACAAAGGTTTCATTACATCTTTGAAAATTCCAAACAAAAGAGACA 2809 |||| | || | || |||||||||||||||||| |||||||||||||||| Sbjct 2677 GTTTTCCT-TT-C---------TT-CATTACATCTTTGAAAATCCCAAACAAAAGAGACA 2724 Query 2810 CCTCCGAGGATCCTGATGAT 2829 | ||| |||||||||||||| Sbjct 2725 CTTCCTAGGATCCTGATGAT 2744 Score = 1242 bits (672), Expect = 0.0 Identities = 797/853 (93%), Gaps = 26/853 (3%) Strand=Plus/Plus Query 20 AAAATGAAGAGAGAAAACAACCTCGTTCTCAGCTTACTCTTCTTTGTAATCGTCTTCCTG 79 |||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 1 AAAATGAAGAGACAAAACAACCTCGTTCTCAGCTTGCTCTTCTTTGTCATCGTCTTCCTG 60 Query 80 ATGCAGGTCGGAGAAGCACAAAATAGGATAACCAATGTAAATGTGGGAATCGTGAATGAT 139 ||||| ||||||||||||||||| ||| |||| ||||||||||||| |||||||| ||| Sbjct 61 ATGCAAGTCGGAGAAGCACAAAAGAGGGCAACCGATGTAAATGTGGGGATCGTGAACGAT 120 Query 140 ATCGGAACGGCTTACTCCAACATGACTTTGCTCTGTATCAACATGTCTCTTTCTGATTTC 199 |||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 121 GTCGGAATGGCATACTCCAACATGACTTTGCTCTGTATCAACATGTCTCTCTCTGATTTC 180 Query 200 TACTCTTCTCATCCAGAAACCCAAACAAGGCTTGTAACCACCGTTGTTGACTCCAAAAAT 259 |||||||||||| |||||||||| |||||||||||||||||| ||| ||||||||||||| Sbjct 181 TACTCTTCTCATACAGAAACCCAGACAAGGCTTGTAACCACCATTG-TGACTCCAAAAAT 239 Query 260 GATGTTGTTACCGCAGCAGCAGCAGCTCTTGATCTGATAACGAACAAGGAAGTGAAAGCG 319 ||||||||| | | ||||||| | | | || ||||||||||||| Sbjct 240 GATGTTGTT-----ATC-GCAGCAG--C---A---G----CG-----GGAAGTGAAAGCG 276 Query 320 ATTCTAGGGCCATGGACTTCGATGCAGGCTCAATTCATGATTGAGATGGGACAAAAATCT 379 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 277 ATTCTAGGGCCATGGACTTCGATGCAGGCTCAATTCATGATTGAGATGGGACAAAAATCT 336 Query 380 CAGGTGCCGATTGTTACGTATTCTGCAACAAGTCCGTCCCTCGCTTCCATCCGTAGTCAA 439 ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| Sbjct 337 CAGGTGCCGATTGTTACATATTCTGCAACAAGTCCGTCCCTTGCTTCCATCCGTAGTCAA 396 Query 440 TACTTCTTTCGGGCTACGTATGATGATTCATCTCAAGTGCACGCCATTAAAGAAATCATC 499 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 397 TACTTCTTTCGGGCTACGTATGATGATTCATCTCAAGTGCACGCCATCAAAGAAATCATC 456 Query 500 AAACTTTTTGGTTGGAGAGAGGTTGCACCTGTATATGTTGACGACACATTTGGCGAAGGT 559 ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 457 AAACTTTTTGGGTGGAGAGAGGTTGCACCTGTATACGTTGACGACACATTTGGCGAAGGT 516 Query 560 ATAATGCCTCGTCTTACAGATGTGTTACAAGAGATTAACGTTCGTATACCTTATAGGACC 619 |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| Sbjct 517 ATAATGCCTCGTCTTACAGATGCGTTACAAGAGATTAACGTCCGTATACCTTATAGGACC 576 Query 620 GTGATCTCTCCCAATGCCACGGATGATGAAATATCTGTGGAACTTCTCCGGATGATGACT 679 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| Sbjct 577 GTGATCTCTCCCAATGCCACGGATGATGAAATCTCTGTGGAACTTTTCCGGATGATGACT 636 Query 680 CTACCCACTAGAGTATTTGTTGTCCAC-CTTGTTGAATTGCTTGCCTCAAGATTTTTTGC 738 ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 637 CTACCCACTAGAGTATTTGTTGTCCACACT-GTTGAATTGCTTGCCTCAAGATTTTTTGC 695 Query 739 GAAAGCTACGGAAATTGGTTTGATGAAACAAGGATATGTCTGGATCCTCACCAACACAAT 798 |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 696 GAAAGCAACGGAAATTGGTTTGATGAAACAAGGATATGTCTGGATCCTCACCAACGCAAT 755 Query 799 TACCGATGTTCTAAGTATCATGAACGAGACGGAAATTGAAACAATGCAAGGGGTATTGGG 858 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 756 TACCGATGTTCTAAATATCATGAACGAGACGGAAATTGAAACAATGCAAGGGGTATTGGG 815 Query 859 TGTAAAGACTTAT 871 ||||||||||||| Sbjct 816 TGTAAAGACTTAT 828 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 106766956735 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5