BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27110.1
Length=2076
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942400 jgi|Araly1|942400|scaffold_602944.1 2922 0.0
> Ahg942400 jgi|Araly1|942400|scaffold_602944.1
Length=2113
Score = 2922 bits (1582), Expect = 0.0
Identities = 1916/2080 (92%), Gaps = 11/2080 (1%)
Strand=Plus/Plus
Query 1 ATGGAATCTTCAAAGTTGTTGTCTTTATTGCGAGAGTGTACCAATAGCACCAAGTCTCTA 60
|||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||
Sbjct 21 ATGGAATCTTCAAAGTTGTTATCTTTATTGCGAGAATGTACCAAT---ACCAAGTCTCTA 77
Query 61 AGAAGAA-TCAAGCTTGTGCATCAGAGAATACTCACGTTGGGGTTACGAAGAGACGTAGT 119
|| | || ||||||||| || ||||||||||||||| |||||||||| || ||||| ||
Sbjct 78 AG-ACAAGCCAAGCTTGTTCACCAGAGAATACTCACGGTGGGGTTACGTAGCGACGTCGT 136
Query 120 TTTATGCAAAAGTCTCATCAATGTCTACTTTACTTGTAAAGACCATTGCTCAGCGAGACA 179
|||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||
Sbjct 137 TTTATGCAAAAGTCTCATCAATGTCTACTTCGCTTGTAAAGACCATTGCTCTGCAAGACT 196
Query 180 CGTCTTCGAGAACTTCGATATACGATCGGATGTTTACATATGGAACTCTTTAATGTCTGG 239
||||||||| ||| |||||||||| |||||||||||||| ||||||||| || |||||||
Sbjct 197 CGTCTTCGAAAACATCGATATACGGTCGGATGTTTACATCTGGAACTCTCTAGTGTCTGG 256
Query 240 TTATTCAAAGAACTCAATGTTTCATGACACTCTTGAGGTTTTCAAGAGGTTGTTGAATTG 299
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 257 TTATTCAAAGAACTCAATGTTTCATGACACTCTTAAGGTTTTCAAGAGGTTGTTGAATTG 316
Query 300 CTCAATTTGTGTCCCTGATTCGTTTACTTTTCCGAATGTGATTAAGGCTTATGGTGCGTT 359
| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 317 CCCAATTTGCGTCCCTGATTCGTTTACTTACCCGAATGTGATTAAGGCTTATGGTGCGTT 376
Query 360 GGGTAGAGAGTTTCTTGGTAGGATGATTCATACTCTTGTGGTGAAGAGTGGGTATGTTTG 419
||||||||||||||||||||||||||||||||| |||| ||||| |||||| |||||||
Sbjct 377 AGGTAGAGAGTTTCTTGGTAGGATGATTCATACTGTTGTAGTGAAAAGTGGGCATGTTTG 436
Query 420 TGATGTGGTTGTGGCGAGTTCTTTGGTTGGTATGTATGCAAAGTTTAACTTGTTTGAGAA 479
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 437 TGATGTTGTTGTGGCGAGTTCTTTGGTTGGTATGTATGCAAAGTTTAACTTGTTTGAGGA 496
Query 480 TTCACTACAAGTGTTCGATGAAATGCCTGAGAGAGATGTAGCATCTTGGAACACGGTTAT 539
|||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 497 TTCAGTACAAGTGTTCGATGAAATGCCTGAGAGAGATGTTGCGTCTTGGAACACGGTTAT 556
Query 540 TTCGTGTTTTTATCAAAGTGGAGAGGCAGAGAAGGCTTTGGAGTTGTTTGGAAGAATGGA 599
||| | ||||||||| | || ||||| ||||||||||||||||| ||||||||||||||
Sbjct 557 TTCAAGCTTTTATCAACGCGGGGAGGCTGAGAAGGCTTTGGAGTTATTTGGAAGAATGGA 616
Query 600 AAGTTCTGGCTTTGAACCAAATTCAGTTTC-GTTGACGGTGGCTATATCGGCGTGTTCAA 658
|||||||| ||||||||||||||||||||| || ||||| |||||||||||||| || |
Sbjct 617 AAGTTCTGACTTTGAACCAAATTCAGTTTCAATT-ACGGTAGCTATATCGGCGTGCTCGA 675
Query 659 GGCTGTTGTGGTTGGAGAGAGGGAAGGAGATACATAGAAAATGTGTGAAGAAAGGGTTTG 718
||||||||| |||||||||||||||||||| |||||||||| | |||||||||||||||
Sbjct 676 GGCTGTTGTATTTGGAGAGAGGGAAGGAGATCCATAGAAAATATTTGAAGAAAGGGTTTG 735
Query 719 AGTTAGATGAGTATGTAAACTCTGCCCTTGTTGATATGTATGGGAAATGTGACTGCTTGG 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 736 AGTTAGATGAGTATGTAAACTCTGCCCTTGTTGATATGTATGGGAAATGTGACTGCTTGG 795
Query 779 AGGTGGCTAGGGAGGTTTTTCAGAAAATGCCTAGAAAGAGTTTGGTTGCTTGGAATTCTA 838
|| ||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 796 AGATGGCTAGAGAGGTTTTTCAGAAAATGCGTAGAAAGAGTTTGATTGCTTGGAATTCTA 855
Query 839 TGATCAAAGGTTATGTCGCTAAAGGAGACAGTAAGTCATGTGTTGAGATTTTGAATAGAA 898
|||| | |||||||||||||| |||||| |||||||||||||||||| ||||||||||||
Sbjct 856 TGATTAGAGGTTATGTCGCTAGAGGAGATAGTAAGTCATGTGTTGAGCTTTTGAATAGAA 915
Query 899 TGATCATAGAAGGAACTCGACCGAGTCAGACAACCTTGACCAGCATTTTGATGGCTTGCT 958
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 916 TGATTATAGAAGGAACTCGACCGAGTCAGACAACCTTGACCAGTATTTTGATGGCTTGCT 975
Query 959 CTCGCTCACGGAATCTCCTACATGGAAAATTTATACACGGTTATGTGATTAGAAGCGTTG 1018
|||||||||||||||| |||||||||||||| | ||||||||||||||||| || ||||
Sbjct 976 CTCGCTCACGGAATCTATTACATGGAAAATTTGTTCACGGTTATGTGATTAGGAGTGTTG 1035
Query 1019 TAAATGCAGATATCTATGTGAACTGTTC-CTTGATTGATCTATACTTCAAGTGTGGTGAA 1077
| |||||||||||||| | |||||||| || ||||||||| ||||||||||||||||||
Sbjct 1036 TTGATGCAGATATCTATATAAACTGTTCTCT-GATTGATCTTTACTTCAAGTGTGGTGAA 1094
Query 1078 GCAAATTTGGCTGAAACCGTCTTTTCAAAGACACAGAAGGACGTTGCTGAGTCATGGAAT 1137
| || ||||||||||||||||||| |||||||||||| ||||||| |||||||||||||
Sbjct 1095 GTTAAGTTGGCTGAAACCGTCTTTTTAAAGACACAGAAAGACGTTGTTGAGTCATGGAAT 1154
Query 1138 GTCATGATTTCTAGTTATATCAGTGTAGGTAATTGGTTTAAGGCTGTTGAAGTGTATGAC 1197
|| ||||| ||| ||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 1155 GTTATGATCTCTGGTTATGTCAGTGTAGGTAATTGGTTTAAGGCTGTTGACGTGTATGAC 1214
Query 1198 CAAATGGTGAGTGTTGGAGTGAAGCCAGACGTGGTAACTTTCACAAGTGTTTTACCTGCT 1257
||||||||||||||||||||| ||||||| | ||||||||||||||||||||| || ||
Sbjct 1215 CAAATGGTGAGTGTTGGAGTGCAGCCAGATATAGTAACTTTCACAAGTGTTTTATCTACT 1274
Query 1258 TGTTCGCAACTGGCTGCGTTAGAGAAAGGCAAACAGATTCATTTGTCCATTAGTGAGAGC 1317
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1275 TGTTCGCAACTGGCTGCGTTAGAGAAAGGTAAACAGATTCATTTGTCCATTAGCGAGAGC 1334
Query 1318 AGGCTCGAAACAGACGAGTTGCTTTTGAGTGCGCTTCTTGACATGTATTCTAAATGCGGC 1377
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1335 AGGCTCGAAACAGACGAGTTGCTGTTGAGTGCGCTCCTTGACATGTATTCTAAATGCGGT 1394
Query 1378 AATGAAAAAGAGGCTTTTAGGATTTTCAACAGTATACCAAAGAAGGATGTTGTATCATGG 1437
|||| ||||||||||| ||| ||||||||||||||||||||||| |||||||| ||||||
Sbjct 1395 AATGTAAAAGAGGCTTCTAGAATTTTCAACAGTATACCAAAGAAAGATGTTGTGTCATGG 1454
Query 1438 ACGGTAATGATCTCTGCGTATGGATCTCATGGTCAACCCAGAGAAGCACTTTACCAGTTT 1497
||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||
Sbjct 1455 ACGGTAATGATCTCTGCGTATGGATCTCATGGTCAACCCAGAGAAGCGCTCTACCATTTT 1514
Query 1498 GATGAAATGCAGAAGTTTGGTCTAAAACCTGATGGGGTTACTCTTCTTGCTGTATTGTCA 1557
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1515 GATGAAATGCAGAAGTTTGGTGTAAAACCTGATGGGGTTACTTTTCTTGCTGTATTGTCA 1574
Query 1558 GCTTGTGGTCATGCTGGGCTAATTGATGAGGGTCTCAAATTTTTCAGTCAAATGAGATCA 1617
|||||||||||||||||| |||||||||| ||| |||| | ||||||||||||||||||
Sbjct 1575 GCTTGTGGTCATGCTGGGTTAATTGATGAAGGTGTCAAGTATTTCAGTCAAATGAGATCC 1634
Query 1618 AAGTACGGAATCGAGCCTATTATTGAACATTACTCGTGCATGATTGACATTCTTGGCCGA 1677
||||| ||||||||| ||| ||||||||| ||||||||| |||||||||| |||||||||
Sbjct 1635 AAGTATGGAATCGAGGCTAGTATTGAACAGTACTCGTGCTTGATTGACATCCTTGGCCGA 1694
Query 1678 GCAGGTCGGTTGCTTGAAGCTTATGAAATTATTCAACAAACACCAGAGACAAGTGACAAT 1737
||||||||||||||||||||||||| |||| ||||||||| |||||||||||| ||||||
Sbjct 1695 GCAGGTCGGTTGCTTGAAGCTTATGGAATTCTTCAACAAAAACCAGAGACAAGAGACAAT 1754
Query 1738 GCAGAGCTTCTCAGTACTCTCTTCTCTGCTTGTTGCTTGCACCTGGAACATTCATTGGGA 1797
||||||||||||||||||||||||| ||||||||||||||| | ||| |||| ||||||
Sbjct 1755 GCAGAGCTTCTCAGTACTCTCTTCTGTGCTTGTTGCTTGCATCGGGATCATTTGTTGGGA 1814
Query 1798 GATAGAATCGCAAGATTGCTTGTTGAGAATTATCCAGATGATGCATCAACCTACA-TGGT 1856
||| |||||||| ||| ||||| ||||| ||||||||||||||||||||||||| || |
Sbjct 1815 TATACAATCGCAAAATTACTTGTGGAGAAATATCCAGATGATGCATCAACCTACACTG-T 1873
Query 1857 CTTGTTCAATTTGTATGCTTCTGGTGAGTCATGGGATGCAGCAAGACGAGTCAGATTAAA 1916
|||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||| ||
Sbjct 1874 CTTGTTCAATTTGTATGCTTCTGGCGAGTCATGGGATGCAGCAAGGCGAGTAAGATTGAA 1933
Query 1917 AATGAAAGAAATGGGATTGAGGAAGAAACCGGGCTGCAGTTGGATTGAGATGAGTGACAA 1976
|||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1934 AATGAAAGAAGTGGGAATGAGGAAGAAACCGGGCTGCAGTTGGATTGAGATGAATGAAAA 1993
Query 1977 AGTGTGCCATTTCTTTGCTGAGGACAGGTCTCATTTACGAGCTGAGAACGTTTATGAGTG 2036
|||||||||||||||||||||||| ||||||||| || ||||||||| |||||||| ||
Sbjct 1994 AGTGTGCCATTTCTTTGCTGAGGATAGGTCTCATCCACAAGCTGAGAATGTTTATGAATG 2053
Query 2037 TCTTGCTCTTTTGAGTGGTCACATGGAATCCGGTCAATGA 2076
|||||||||||| ||||||||||||||| | |||||||||
Sbjct 2054 TCTTGCTCTTTTAAGTGGTCACATGGAAGCTGGTCAATGA 2093
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78085002250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5