BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G27110.1 Length=2076 Score E Sequences producing significant alignments: (Bits) Value Ahg942400 jgi|Araly1|942400|scaffold_602944.1 2922 0.0 > Ahg942400 jgi|Araly1|942400|scaffold_602944.1 Length=2113 Score = 2922 bits (1582), Expect = 0.0 Identities = 1916/2080 (92%), Gaps = 11/2080 (1%) Strand=Plus/Plus Query 1 ATGGAATCTTCAAAGTTGTTGTCTTTATTGCGAGAGTGTACCAATAGCACCAAGTCTCTA 60 |||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||| Sbjct 21 ATGGAATCTTCAAAGTTGTTATCTTTATTGCGAGAATGTACCAAT---ACCAAGTCTCTA 77 Query 61 AGAAGAA-TCAAGCTTGTGCATCAGAGAATACTCACGTTGGGGTTACGAAGAGACGTAGT 119 || | || ||||||||| || ||||||||||||||| |||||||||| || ||||| || Sbjct 78 AG-ACAAGCCAAGCTTGTTCACCAGAGAATACTCACGGTGGGGTTACGTAGCGACGTCGT 136 Query 120 TTTATGCAAAAGTCTCATCAATGTCTACTTTACTTGTAAAGACCATTGCTCAGCGAGACA 179 |||||||||||||||||||||||||||||| ||||||||||||||||||| || |||| Sbjct 137 TTTATGCAAAAGTCTCATCAATGTCTACTTCGCTTGTAAAGACCATTGCTCTGCAAGACT 196 Query 180 CGTCTTCGAGAACTTCGATATACGATCGGATGTTTACATATGGAACTCTTTAATGTCTGG 239 ||||||||| ||| |||||||||| |||||||||||||| ||||||||| || ||||||| Sbjct 197 CGTCTTCGAAAACATCGATATACGGTCGGATGTTTACATCTGGAACTCTCTAGTGTCTGG 256 Query 240 TTATTCAAAGAACTCAATGTTTCATGACACTCTTGAGGTTTTCAAGAGGTTGTTGAATTG 299 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 257 TTATTCAAAGAACTCAATGTTTCATGACACTCTTAAGGTTTTCAAGAGGTTGTTGAATTG 316 Query 300 CTCAATTTGTGTCCCTGATTCGTTTACTTTTCCGAATGTGATTAAGGCTTATGGTGCGTT 359 | ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 317 CCCAATTTGCGTCCCTGATTCGTTTACTTACCCGAATGTGATTAAGGCTTATGGTGCGTT 376 Query 360 GGGTAGAGAGTTTCTTGGTAGGATGATTCATACTCTTGTGGTGAAGAGTGGGTATGTTTG 419 ||||||||||||||||||||||||||||||||| |||| ||||| |||||| ||||||| Sbjct 377 AGGTAGAGAGTTTCTTGGTAGGATGATTCATACTGTTGTAGTGAAAAGTGGGCATGTTTG 436 Query 420 TGATGTGGTTGTGGCGAGTTCTTTGGTTGGTATGTATGCAAAGTTTAACTTGTTTGAGAA 479 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 437 TGATGTTGTTGTGGCGAGTTCTTTGGTTGGTATGTATGCAAAGTTTAACTTGTTTGAGGA 496 Query 480 TTCACTACAAGTGTTCGATGAAATGCCTGAGAGAGATGTAGCATCTTGGAACACGGTTAT 539 |||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 497 TTCAGTACAAGTGTTCGATGAAATGCCTGAGAGAGATGTTGCGTCTTGGAACACGGTTAT 556 Query 540 TTCGTGTTTTTATCAAAGTGGAGAGGCAGAGAAGGCTTTGGAGTTGTTTGGAAGAATGGA 599 ||| | ||||||||| | || ||||| ||||||||||||||||| |||||||||||||| Sbjct 557 TTCAAGCTTTTATCAACGCGGGGAGGCTGAGAAGGCTTTGGAGTTATTTGGAAGAATGGA 616 Query 600 AAGTTCTGGCTTTGAACCAAATTCAGTTTC-GTTGACGGTGGCTATATCGGCGTGTTCAA 658 |||||||| ||||||||||||||||||||| || ||||| |||||||||||||| || | Sbjct 617 AAGTTCTGACTTTGAACCAAATTCAGTTTCAATT-ACGGTAGCTATATCGGCGTGCTCGA 675 Query 659 GGCTGTTGTGGTTGGAGAGAGGGAAGGAGATACATAGAAAATGTGTGAAGAAAGGGTTTG 718 ||||||||| |||||||||||||||||||| |||||||||| | ||||||||||||||| Sbjct 676 GGCTGTTGTATTTGGAGAGAGGGAAGGAGATCCATAGAAAATATTTGAAGAAAGGGTTTG 735 Query 719 AGTTAGATGAGTATGTAAACTCTGCCCTTGTTGATATGTATGGGAAATGTGACTGCTTGG 778 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 736 AGTTAGATGAGTATGTAAACTCTGCCCTTGTTGATATGTATGGGAAATGTGACTGCTTGG 795 Query 779 AGGTGGCTAGGGAGGTTTTTCAGAAAATGCCTAGAAAGAGTTTGGTTGCTTGGAATTCTA 838 || ||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 796 AGATGGCTAGAGAGGTTTTTCAGAAAATGCGTAGAAAGAGTTTGATTGCTTGGAATTCTA 855 Query 839 TGATCAAAGGTTATGTCGCTAAAGGAGACAGTAAGTCATGTGTTGAGATTTTGAATAGAA 898 |||| | |||||||||||||| |||||| |||||||||||||||||| |||||||||||| Sbjct 856 TGATTAGAGGTTATGTCGCTAGAGGAGATAGTAAGTCATGTGTTGAGCTTTTGAATAGAA 915 Query 899 TGATCATAGAAGGAACTCGACCGAGTCAGACAACCTTGACCAGCATTTTGATGGCTTGCT 958 |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 916 TGATTATAGAAGGAACTCGACCGAGTCAGACAACCTTGACCAGTATTTTGATGGCTTGCT 975 Query 959 CTCGCTCACGGAATCTCCTACATGGAAAATTTATACACGGTTATGTGATTAGAAGCGTTG 1018 |||||||||||||||| |||||||||||||| | ||||||||||||||||| || |||| Sbjct 976 CTCGCTCACGGAATCTATTACATGGAAAATTTGTTCACGGTTATGTGATTAGGAGTGTTG 1035 Query 1019 TAAATGCAGATATCTATGTGAACTGTTC-CTTGATTGATCTATACTTCAAGTGTGGTGAA 1077 | |||||||||||||| | |||||||| || ||||||||| |||||||||||||||||| Sbjct 1036 TTGATGCAGATATCTATATAAACTGTTCTCT-GATTGATCTTTACTTCAAGTGTGGTGAA 1094 Query 1078 GCAAATTTGGCTGAAACCGTCTTTTCAAAGACACAGAAGGACGTTGCTGAGTCATGGAAT 1137 | || ||||||||||||||||||| |||||||||||| ||||||| ||||||||||||| Sbjct 1095 GTTAAGTTGGCTGAAACCGTCTTTTTAAAGACACAGAAAGACGTTGTTGAGTCATGGAAT 1154 Query 1138 GTCATGATTTCTAGTTATATCAGTGTAGGTAATTGGTTTAAGGCTGTTGAAGTGTATGAC 1197 || ||||| ||| ||||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct 1155 GTTATGATCTCTGGTTATGTCAGTGTAGGTAATTGGTTTAAGGCTGTTGACGTGTATGAC 1214 Query 1198 CAAATGGTGAGTGTTGGAGTGAAGCCAGACGTGGTAACTTTCACAAGTGTTTTACCTGCT 1257 ||||||||||||||||||||| ||||||| | ||||||||||||||||||||| || || Sbjct 1215 CAAATGGTGAGTGTTGGAGTGCAGCCAGATATAGTAACTTTCACAAGTGTTTTATCTACT 1274 Query 1258 TGTTCGCAACTGGCTGCGTTAGAGAAAGGCAAACAGATTCATTTGTCCATTAGTGAGAGC 1317 ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 1275 TGTTCGCAACTGGCTGCGTTAGAGAAAGGTAAACAGATTCATTTGTCCATTAGCGAGAGC 1334 Query 1318 AGGCTCGAAACAGACGAGTTGCTTTTGAGTGCGCTTCTTGACATGTATTCTAAATGCGGC 1377 ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 1335 AGGCTCGAAACAGACGAGTTGCTGTTGAGTGCGCTCCTTGACATGTATTCTAAATGCGGT 1394 Query 1378 AATGAAAAAGAGGCTTTTAGGATTTTCAACAGTATACCAAAGAAGGATGTTGTATCATGG 1437 |||| ||||||||||| ||| ||||||||||||||||||||||| |||||||| |||||| Sbjct 1395 AATGTAAAAGAGGCTTCTAGAATTTTCAACAGTATACCAAAGAAAGATGTTGTGTCATGG 1454 Query 1438 ACGGTAATGATCTCTGCGTATGGATCTCATGGTCAACCCAGAGAAGCACTTTACCAGTTT 1497 ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||| Sbjct 1455 ACGGTAATGATCTCTGCGTATGGATCTCATGGTCAACCCAGAGAAGCGCTCTACCATTTT 1514 Query 1498 GATGAAATGCAGAAGTTTGGTCTAAAACCTGATGGGGTTACTCTTCTTGCTGTATTGTCA 1557 ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 1515 GATGAAATGCAGAAGTTTGGTGTAAAACCTGATGGGGTTACTTTTCTTGCTGTATTGTCA 1574 Query 1558 GCTTGTGGTCATGCTGGGCTAATTGATGAGGGTCTCAAATTTTTCAGTCAAATGAGATCA 1617 |||||||||||||||||| |||||||||| ||| |||| | |||||||||||||||||| Sbjct 1575 GCTTGTGGTCATGCTGGGTTAATTGATGAAGGTGTCAAGTATTTCAGTCAAATGAGATCC 1634 Query 1618 AAGTACGGAATCGAGCCTATTATTGAACATTACTCGTGCATGATTGACATTCTTGGCCGA 1677 ||||| ||||||||| ||| ||||||||| ||||||||| |||||||||| ||||||||| Sbjct 1635 AAGTATGGAATCGAGGCTAGTATTGAACAGTACTCGTGCTTGATTGACATCCTTGGCCGA 1694 Query 1678 GCAGGTCGGTTGCTTGAAGCTTATGAAATTATTCAACAAACACCAGAGACAAGTGACAAT 1737 ||||||||||||||||||||||||| |||| ||||||||| |||||||||||| |||||| Sbjct 1695 GCAGGTCGGTTGCTTGAAGCTTATGGAATTCTTCAACAAAAACCAGAGACAAGAGACAAT 1754 Query 1738 GCAGAGCTTCTCAGTACTCTCTTCTCTGCTTGTTGCTTGCACCTGGAACATTCATTGGGA 1797 ||||||||||||||||||||||||| ||||||||||||||| | ||| |||| |||||| Sbjct 1755 GCAGAGCTTCTCAGTACTCTCTTCTGTGCTTGTTGCTTGCATCGGGATCATTTGTTGGGA 1814 Query 1798 GATAGAATCGCAAGATTGCTTGTTGAGAATTATCCAGATGATGCATCAACCTACA-TGGT 1856 ||| |||||||| ||| ||||| ||||| ||||||||||||||||||||||||| || | Sbjct 1815 TATACAATCGCAAAATTACTTGTGGAGAAATATCCAGATGATGCATCAACCTACACTG-T 1873 Query 1857 CTTGTTCAATTTGTATGCTTCTGGTGAGTCATGGGATGCAGCAAGACGAGTCAGATTAAA 1916 |||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||| || Sbjct 1874 CTTGTTCAATTTGTATGCTTCTGGCGAGTCATGGGATGCAGCAAGGCGAGTAAGATTGAA 1933 Query 1917 AATGAAAGAAATGGGATTGAGGAAGAAACCGGGCTGCAGTTGGATTGAGATGAGTGACAA 1976 |||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||| || Sbjct 1934 AATGAAAGAAGTGGGAATGAGGAAGAAACCGGGCTGCAGTTGGATTGAGATGAATGAAAA 1993 Query 1977 AGTGTGCCATTTCTTTGCTGAGGACAGGTCTCATTTACGAGCTGAGAACGTTTATGAGTG 2036 |||||||||||||||||||||||| ||||||||| || ||||||||| |||||||| || Sbjct 1994 AGTGTGCCATTTCTTTGCTGAGGATAGGTCTCATCCACAAGCTGAGAATGTTTATGAATG 2053 Query 2037 TCTTGCTCTTTTGAGTGGTCACATGGAATCCGGTCAATGA 2076 |||||||||||| ||||||||||||||| | ||||||||| Sbjct 2054 TCTTGCTCTTTTAAGTGGTCACATGGAAGCTGGTCAATGA 2093 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 78085002250 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5