BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27120.1
Length=1856
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489610 jgi|Araly1|489610|fgenesh2_kg.6__2744__AT5G27120.1 2691 0.0
Ahg326985 jgi|Araly1|326985|fgenesh1_pm.C_scaffold_6002205 1190 0.0
> Ahg489610 jgi|Araly1|489610|fgenesh2_kg.6__2744__AT5G27120.1
Length=1767
Score = 2691 bits (1457), Expect = 0.0
Identities = 1672/1775 (94%), Gaps = 17/1775 (1%)
Strand=Plus/Plus
Query 1 GCGGCTCCTGATTTTAGCTCTCTCTAAAGCTGTAGTTGTGCGTTAACCCTCTAAGGAGCT 60
||||||||||||||||||||||||||| |||| || ||||||| |||||| | |||||||
Sbjct 1 GCGGCTCCTGATTTTAGCTCTCTCTAACGCTGCAGCTGTGCGTAAACCCTTTGAGGAGCT 60
Query 61 TGTAAAAATGCTA-ATACTGTTTGAGACGCCAGGTGGTTTTGCCATCTTCAAAGTATTAA 119
||| ||||||| | ||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 61 TGTGAAAATGC-ACATACTGTTTGAGACGCCAGGTGGTTTTGCAATCTTTAAAGTATTAG 119
Query 120 ACGAAGGAAAGCTCTCTAATGTTGAGGATTTGGGTAATGAGTTCTCGACCGCAAAGTTAG 179
| ||||||||||||||||||||||||||| | ||||||||||||| ||||||||||| ||
Sbjct 120 ATGAAGGAAAGCTCTCTAATGTTGAGGATATCGGTAATGAGTTCTTGACCGCAAAGTCAG 179
Query 180 CCCGAAAGATGGTGAAGCTAGTAGCTTTTGACAAGTTTGACAACACAGCTGAAGCTCTTG 239
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CCCGAAAGATGGTTAAGCTAGTAGCTTTTGACAAGTTTGACAACACAGCTGAAGCTCTTG 239
Query 240 AAGCAGTGGCTAAATTGCTTGAGGGAACTCCAAGCAAGGGTCTACGCAAGTTTTTGAAAG 299
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 240 AAGCAGTGGCTAAATTGCTTGAGGGAACTCCAAGCAAGGGTCTACGCAAGTTCTTGAAGG 299
Query 300 CTAACTGTGTTGGTGAAACATTAGCTGTTGCTGATTCTAAGCTTGGAAATATCATCAAGG 359
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 300 CTAACTGTGTTGGTGAAACCTTGGCTGTTGCTGATTCTAAGCTTGGAAATATCATCAAGG 359
Query 360 AGAAACTGAAAATAGTCTGTGTTCACAACAATGCTGTTATGGAGCTGTTAAGAGGTATCA 419
||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| | |
Sbjct 360 AGAAACTGAAAATAGACTGTGTTCACAACAATGCTGTTATGGAGCTGTTACGAGGTGTTA 419
Query 420 GAAGCCAGCTAACTGAACTTATATCTGGATTGGGTGATCAAGATCTAGGTCCAATGAGCT 479
|||||||||||| ||||||||||||||||||||| ||| ||||||||| |||||||||||
Sbjct 420 GAAGCCAGCTAAGTGAACTTATATCTGGATTGGGAGATAAAGATCTAGCTCCAATGAGCT 479
Query 480 TGGGGTTGTCTCACAGCCTTGCCAGATATAAACTAAAGTTCAGTTCCGACAAGGTGGATA 539
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 480 TGGGGTTGTCTCACAGCCTTGCCAGATATAAACTAAAGTTCAGTACCGACAAGGTGGATA 539
Query 540 CCATGATAATCCAAGCTATTGGTCTGCTTGATGATCTTGACAAAGAGCTTAACACTTACG 599
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 540 CTATGATAATCCAAGCTATTGGTCTGCTTGATGATCTTGACAAAGAGCTCAACACGTACG 599
Query 600 CTATGAGGGTTCGTGAATGGTTTGGTTGGCATTTTCCTGAGCTTGCTAAGATCGTACAGG 659
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 600 CTATGAGGGTTCGTGAATGGTATGGTTGGCATTTTCCTGAGCTTGCTAAGATCGTACAGG 659
Query 660 ACAATATCTTATATGCCAAGGCTGTTAAACTAATGGGGAATCGGATTAATGCTGCAAAGC 719
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 660 ACAATATCTTATATGCCAAGGCTGTTAAACTTATGGGGAATCGGGTTAATGCTGCAAAGC 719
Query 720 TAGACTTCTCTGAGATATTGGCTGATGAAATTGAAGCAGAACTGAAAGAGGCTGCTGTGA 779
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 720 TAGACTTCTCTGAGATATTGGCTGATGAAGTTGAAGCAGAACTGAAAGAGGCTGCTGTGA 779
Query 780 TATCTATGGGAACTGAAGTCAGTGACCTTGATTTATTGCACATCCGAGAACTCTGTGACC 839
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 780 TATCTATGGGAACTGAAGTAAGCGACCTTGATTTATTGCACATCCGAGAACTCTGTGACC 839
Query 840 AGGTTCTTTCTCTTGCCGAGTACAGAGCTCAGCTTTATGACTACTTGAAGAGCAGAATGA 899
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 840 AGGTTCTTTCTCTTGCTGAGTACAGAGCTCAGCTTTTTGACTACTTGAAGAGCAGAATGA 899
Query 900 ACACAATTGCACCAAATCTAACTGCCCTTGTCGGGGAGCTAGTCGGTGCTCGCTTAATAT 959
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 900 ACACAATTGCACCAAATCTTTCTGCCCTTGTCGGGGAGCTAGTCGGTGCTCGCTTAATAT 959
Query 960 CTCACGGTGGTAGTTTGTTGAACCTCGCAAAGCAACCTGGAAGCACGGTTCAGATTCTTG 1019
|||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 960 CTCATGGTGGTAGTTTGTTGAACCTGGCAAAGCAACCTGGAAGCACAATTCAGATTCTTG 1019
Query 1020 GAGCTGAAAAAGCCTTATTTAGAGCCCTTAAGACCAAACACGCTACTCCAAAGTATGGTT 1079
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1020 GAGCTGAAAAAGCCTTATTTAGAGCCCTTAAGACCAAGCACGCCACTCCAAAGTATGGTC 1079
Query 1080 TAATTTTCCATGCATCTGTTGTTGGCCAAGCTGCACCGAAGAACAAGGGTAAAATTTCAC 1139
|| ||| ||| |||||||| ||| ||||| || |||| ||||||||||||||||||||||
Sbjct 1080 TACTTTACCACGCATCTGTGGTTTGCCAAACTACACCAAAGAACAAGGGTAAAATTTCAC 1139
Query 1140 GGTCACTAGCTGCAAAATCTGTTCTTGCTATCCGTTGTGATGCTCTTGGTGACTC-CCAA 1198
||||| ||||||||||| ||||||||||||||||||||||||| |||||||| | ||||
Sbjct 1140 GGTCATTAGCTGCAAAAGCTGTTCTTGCTATCCGTTGTGATGCCCTTGGTGA-TGGCCAA 1198
Query 1199 GACAACACTATGGGAGTTGAAAACCGTTTAAAGCTTGAAGCACGGTTGAGAACTCTCGAA 1258
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1199 GACAACACTATGGGAGTGGAAAACCGCTTAAAGCTTGAAGCACGGTTGAGAACTCTCGAA 1258
Query 1259 GGAAAAGATTTAGGACGTCTATCTGGCTCAGCTAAAGGCAAACCAAAGATTGAAGTATAT 1318
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1259 GGAAAAGATTTAGGACGTCTGTCTGGCTCAGCTAAAGGCAAACCAAAGATTGAAGTTTAT 1318
Query 1319 GACAAAGATAAAAAGAAAGGATCCGGAGGTCTGATCACTCCTGCTAAGACATACAACACT 1378
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1319 GACAAAGATAAAAAGAAAGGATCCGGAGGTCTGATCACTCCTGCTAAGACTTACAACACA 1378
Query 1379 GCTGCAGACTCTCTTCTTCAAACTCCCACAGTGGATTCAGAGAACGGTGTgaaagagaag 1438
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1379 GCTGCAGACTCTCTTCTTCAAACTCCCACAGTGGATTCAGAGAACGGTGTCAAAGAGAAG 1438
Query 1439 aaagacaaaaagaagaagaagaag--G-CTGATGATGAGGAAGAAGCCAAAACTGAGGAG 1495
|||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||
Sbjct 1439 AAAGACAAAAAGAAGAAGAAGAAGAAGGCTGATGATGAGGAAGAACCCAAAACTGAGGAG 1498
Query 1496 CCCTCAAAGAAGAAATCgaataagaagaagacagaagcagaacctgaaaccgccgaagag 1555
|| || |||||||| ||||| |||||||| ||| ||||||||||||||||||||||||||
Sbjct 1499 CCTTCGAAGAAGAAGTCGAAGAAGAAGAAAACAAAAGCAGAACCTGAAACCGCCGAAGAG 1558
Query 1556 cctgcaaagaaggagaagaagaagaagagaaaacacgaggaagaggaaactgaaatgcct 1615
||||||||||||||||| || | ||||||||||||||||||||||||||| |||||||||
Sbjct 1559 CCTGCAAAGAAGGAGAA-AA-A-GAAGAGAAAACACGAGGAAGAGGAAACCGAAATGCCT 1615
Query 1616 gctaagaagaaggaaaagagtgagaagaagaagaagaagaaaactgaggtctgaagagaC 1675
|||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct 1616 GCTAAGAAGAAGGAAAAGAGTGAGAAGAAGAAGAAGAA-AA--CTGAGGTCTGAGGAGAG 1672
Query 1676 CTTTAATATTTTTGCGTGGTCTAGTTTA-CT---TTGTTATCAGAAACAAAGAAAATCTT 1731
|||| | |||||||||||||||||| || |||||||||||||||||| |||||||
Sbjct 1673 AGTTAAAAATTTTGCGTGGTCTAGTTTCTCTACGTTGTTATCAGAAACAAAGCAAATCTT 1732
Query 1732 TTGTGGCGTTAGGTGTTAAGTAAGGTTTTTGTTTT 1766
|||| ||||||||||||||||||||||||| ||||
Sbjct 1733 TTGTTGCGTTAGGTGTTAAGTAAGGTTTTTTTTTT 1767
> Ahg326985 jgi|Araly1|326985|fgenesh1_pm.C_scaffold_6002205
Length=1362
Score = 1190 bits (644), Expect = 0.0
Identities = 897/1020 (88%), Gaps = 13/1020 (1%)
Strand=Plus/Plus
Query 262 GGGAACTCCAAGCAAGGGTCTACGCAAGTTTTTGAAAGCTAACTGT-GT--TGGTGAAAC 318
||||||| ||||||| |||||||||||||| |||||| ||||||| || |||||||||
Sbjct 120 GGGAACTTCAAGCAAAGGTCTACGCAAGTTCTTGAAAAATAACTGTGGTGATGGTGAAAC 179
Query 319 ATTAGCTGTTGCTGATTCTAAGCTTGGAAATATCATCAAGGAGAAACTGAAAATAGTCTG 378
||||| || |||||||| || |||||||||| |||| ||||||||| | || ||
Sbjct 180 CTTAGCGGTGGCTGATTCAAATATTGGAAATATTATCACTGAGAAACTGGACGTACAATG 239
Query 379 TGTTCACAACAATGCTGTTATGGAGCTGTTAAGAGGTATCAGAAGCCAGCTAACTGAACT 438
|||||||||||| |||||||||||||| ||| | ||| | ||||||||| |||| |||||
Sbjct 240 TGTTCACAACAACGCTGTTATGGAGCTATTACGCGGTGTGAGAAGCCAGTTAACCGAACT 299
Query 439 TATATCTGGATTGGGTGATCAA-GATCTAGGTCCAATGAGCTTGGGGTTGTCTCACAGCC 497
| |||| ||||||| |||| || ||| ||| |||||||||| ||| |||||||||| ||
Sbjct 300 TTTATCCGGATTGGATGAT-AACGATTTAGCTCCAATGAGCCTGGAATTGTCTCACATCC 358
Query 498 TTGCCAGATATAAACTAAAGTTCAGTTCCGACAAGGTGGATACCATGATAATCCAAGCTA 557
|||| |||||||||||||| ||| || || |||||||| |||||||||||||||| ||
Sbjct 359 TTGCTAGATATAAACTAAAAATCACCTCTGATAAGGTGGAGACCATGATAATCCAAGTTA 418
Query 558 TTGGTCTGCTTGATGATCTTGACAAAGAGCTTAACACTTACGCTATGAGGGTTCGTGAAT 617
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 419 TTGGTCTTCTTGATGATCTTGACAAAGAGCGTAACACTTACGCTATGAGGGTTCGTGAAT 478
Query 618 GGTTTGGTTGGCATTTTCCTGAGCTTGCTAAGATCGTACAGGACAATATCTTATATGCCA 677
||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 479 GGTATGGTTGGCATTTTCCCGAGCTTGCGAAGATCGTACAGGACAATATCTTATATGCCA 538
Query 678 AGGCTGTTAAACTAATGGGGAATCGGATTAATGCTGCAAAGCTAGACTTCTCTGAGATAT 737
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 539 AGGCTGTTAAACTAATGGGGAATCGGATTAATGCTGCAAATCTAGACTTCTCCGAGATAT 598
Query 738 TGGCTGATGAAATTGAAGCAGAACTGAAAGAGGCTGCTGTGATATCTATGGGAACTGAAG 797
||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 599 TGGCTGATGAAGTTGAAGCAGAACTTAAAGAGGTTGCTGTGATATCTATGGGAACTGAAG 658
Query 798 TCAGTGACCTTGATTT-ATTGCACATCCGAGAACTCTGTGACCAGGTTCTTTCTCTTGCC 856
||| |||||||||||| ||| ||||||||| |||||||||||||| |||| ||||||||
Sbjct 659 TCACTGACCTTGATTTGATT-CACATCCGACAACTCTGTGACCAGATTCTGTCTCTTGCT 717
Query 857 GAGTACAGAGCTCAGCTTTATGACTACTTGAAGAGCAGAATGAACACAATTGCACCAAAT 916
|||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||
Sbjct 718 GAGTACAGAGCTCAGCTTAATGACTACTTGAAGAGTAGAATGAACAAAATTGCACCAAAT 777
Query 917 CTAACTGCCCTTGTCGGGGAGCTAGTCGGTGCTCGC-TTAATATCTCACGGTGGTAGTTT 975
|||||||||||||||||||||||||||||||||||| ||| | ||||| |||||||| |
Sbjct 778 CTAACTGCCCTTGTCGGGGAGCTAGTCGGTGCTCGCCTTATT-TCTCATTGTGGTAGTCT 836
Query 976 GTTGAACCTCGCAAAGCAACCTGGAAGCACGGTTCAGATTCTTGGAGCTGAAAAAGCCTT 1035
|| ||||||||||||| |||||| |||||| |||||||||||||||||||||| ||| |
Sbjct 837 ATTAAACCTCGCAAAGCTACCTGGGAGCACGATTCAGATTCTTGGAGCTGAAAAGGCCCT 896
Query 1036 ATTTAGAGCCCTTAAGACCAAACACGCTACTCCAAAGTATGGTTTAATTTTCCATGCATC 1095
|| |||||||| | || || ||||| ||||||||| | ||| | |||| ||||||| |
Sbjct 897 ATATAGAGCCCGCAGGATGAACCACGCCACTCCAAAGCACGGTCTGATTTACCATGCACC 956
Query 1096 TGTTGTTGGCCAAGCTGCACC-GAAGAACAAGGGTAAAATTTCACGGTCACTAGCTGCAA 1154
||| ||| ||||||||||||| || | ||||||||||||| ||||||||| |||||||||
Sbjct 957 TGTGGTTAGCCAAGCTGCACCAGA-GCACAAGGGTAAAATCTCACGGTCATTAGCTGCAA 1015
Query 1155 AATCTGTTCTTGCTATCCGTTGTGATGCTCTTGGTGACTCC-CAAGACAACACTATGGGA 1213
|| |||||||||||||||||||||||||| ||||||| | ||||||||||| ||||||
Sbjct 1016 AAGCTGTTCTTGCTATCCGTTGTGATGCTTTTGGTGA-TGGACAAGACAACACAATGGGA 1074
Query 1214 GTTGAAAACCGTTTAAAGCTTGAAGCACGGTTGAGAACTCTCGAAGGAAAAGATTTAGGA 1273
|| |||| ||| |||||||| ||||| || ||||||| ||| |||||| |||||||||
Sbjct 1075 GTGGAAACCCGCTTAAAGCTGGAAGCGCGTTTGAGAAATCTTGAAGGAGGGGATTTAGGA 1134
Score = 147 bits (79), Expect = 4e-34
Identities = 106/119 (89%), Gaps = 2/119 (2%)
Strand=Plus/Plus
Query 68 ATGCTAATACTGTTTGAGACGCCAGGTGGTTTTGCCA-TCTTCAAAGTATTAAACGAAGG 126
|||||| |||||||||||||| |||||||||||| || |||| ||||||||| | |||||
Sbjct 1 ATGCTAGTACTGTTTGAGACGTCAGGTGGTTTTG-CACTCTTTAAAGTATTAGATGAAGG 59
Query 127 AAAGCTCTCTAATGTTGAGGATTTGGGTAATGAGTTCTCGACCGCAAAGTTAGCCCGAA 185
|||||||||||||||||||||||||||| ||||||||||| | ||| ||| ||| ||||
Sbjct 60 AAAGCTCTCTAATGTTGAGGATTTGGGTGATGAGTTCTCGTCTGCAGAGTCAGCTCGAA 118
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69705148350
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5