BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27130.1
Length=1007
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936984 jgi|Araly1|936984|scaffold_501175.1 340 9e-93
Ahg942430 jgi|Araly1|942430|scaffold_602974.1 219 4e-56
> Ahg936984 jgi|Araly1|936984|scaffold_501175.1
Length=1006
Score = 340 bits (184), Expect = 9e-93
Identities = 373/463 (81%), Gaps = 17/463 (4%)
Strand=Plus/Plus
Query 95 ATCTGATTCCACGATGATGAAGAA-AGGAACAAAGCGCAAA-ATCGAAATAAAGAAACGA 152
|||||| | |||||||| ||| || |||||||||| | ||| || ||||| ||||||||
Sbjct 53 ATCTGACTGCACGATGAGGAA-AAGAGGAACAAAGAG-AAAGATTGAAATTAAGAAACGC 110
Query 153 GAAACCAAAGAGCAACGAGCCGTGACTTGC-TCTAAACGCCGTCAAACTGTTTTTTCCAA 211
|| ||| | |||||| | ||| ||||| | |||||||||| ||| | || |||||
Sbjct 111 TTCACTAAACAACAACGATCGGTGGCTTGCAGC-AAACGCCGTCCAACACTCTTCTCCAA 169
Query 212 AGCCGCCGATCTCTGTCTTATCTCCGGTGCTAACATCGCCGTCTTCGTAACCTCTCCCTC 271
|||||| |||||||||||| ||||||| || ||||||||||||||||||||||||||
Sbjct 170 AGCCGCTGATCTCTGTCTTCTCTCCGGAGCCAACATCGCCGTCTTCGTAACCTCTCCGGA 229
Query 272 CGATAGTTCCGATGTTGTCTATTCCTTCTCCGGTTACTCCT-CTGCCTAC-GAAATCGCT 329
||| | ||||| |||| || ||||||||||| |||| || |||||| | ||||| | |
Sbjct 230 CGAGAACTCCGACATTGTTTACTCCTTCTCCGGCTACT-CTCCTGCCT-CTGAAATTGTT 287
Query 330 GATTGTTACCTAAATCG-CAAGCCTCCACCCAAGATTGTTAACCCGGCCGGATCCAAACT 388
||||||||||| || || |||| |||| ||||| ||| ||||||| | |||||| |
Sbjct 288 GATTGTTACCTCAA-CGCCAAGTCTCCTCCCAATATTATTAACCC--TC-AATCCAAGTT 343
Query 389 AGGATTTTGGTGGGAAGACCCTGATCTCTACCATTCGTGTGATGATCTCTCTGAGTTAAG 448
||| |||||||||||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 344 AGGGTTTTGGTGGGAAGACCCTGATCTCTACCTTTATTGTGACGATCTCTCTGAGTTAAG 403
Query 449 CATTATCGAGGATCGTTT-ACAGAGAATGAAGAAGCATGTGATGGCTTGCCTTGAGAAGG 507
|| || || |||||| | | ||||| |||||||||| || ||| ||| |||||||||
Sbjct 404 TATCATTGAAGATCGTATGAT-GAGAACGAAGAAGCATCTGTTGGATTGTCTTGAGAAGA 462
Query 508 AAGAAAAATCTCAACTTGTTTCTAGTTTCGACCAAAACCCTAA 550
|||||||||| ||| || |||| | | ||| |||||||||||
Sbjct 463 AAGAAAAATCACAATTTCTTTCGAAATCCGATCAAAACCCTAA 505
> Ahg942430 jgi|Araly1|942430|scaffold_602974.1
Length=455
Score = 219 bits (118), Expect = 4e-56
Identities = 241/297 (81%), Gaps = 22/297 (7%)
Strand=Plus/Plus
Query 702 TCTTTTGATCAGGACTGTTACTCCTCTCTCTATCAGATCTGTGGAGAATCATCTTCACAA 761
|||||||||||| | | |||||| ||| |||| | || |||||||||||||||||||
Sbjct 99 TCTTTTGATCAGAATTCTTACTCAGCTCGAGATCAAACCTATGGAGAATCATCTTCACAA 158
Query 762 GTTGCTTCTTTTGATCAAAACCCTAGCTCCGAGATCCAAGGA-TT---TG--AAACAGAG 815
|||||||||||||||| ||||||||||||||||||| || || || ||||||||
Sbjct 159 GTTGCTTCTTTTGATCTAAACCCTAGCTCCGAGATCGGTGGTCTTCGATGTGAAACAGAG 218
Query 816 GAAGAGATTAACCAAATCAATCTACTACTACAAGAAACACAAACAGAGGCCAATG-TCAA 874
||||||| ||||||||| |||||||||| | | |||| |||||||||||||| || ||||
Sbjct 219 GAAGAGAATAACCAAATTAATCTACTAC-A-A-GAAATACAAACAGAGGCCA-TGGTCAA 274
Query 875 TTTGGATGATGAGATCTGCTTTTGGAAT-GATCTATCCAACGATGATG-TG--TTTGGTC 930
|||| ||| ||||| | |||||| || | ||| | ||| |||||| || |||||||
Sbjct 275 TTTGTATGGTGAGAG-T--TTTTGGGATAG-TCTCTTCAAAGATGATAATGGGTTTGGTC 330
Query 931 TAAACAGCTACTTCGGTCTCGATAACACCAATG-CAATGATCAACTTCGGAGA-TTC 985
|||||||| ||| | ||||||| | |||||||| || ||||| |||| ||||| |||
Sbjct 331 TAAACAGCGACTCCTGTCTCGACACCACCAATGACA-TGATCGACTTGGGAGAATTC 386
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37436704494
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5