BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G27140.1 Length=1338 Score E Sequences producing significant alignments: (Bits) Value Ahg326985 jgi|Araly1|326985|fgenesh1_pm.C_scaffold_6002205 1489 0.0 Ahg489610 jgi|Araly1|489610|fgenesh2_kg.6__2744__AT5G27120.1 1064 0.0 > Ahg326985 jgi|Araly1|326985|fgenesh1_pm.C_scaffold_6002205 Length=1362 Score = 1489 bits (806), Expect = 0.0 Identities = 1139/1296 (88%), Gaps = 37/1296 (3%) Strand=Plus/Plus Query 1 ATGCTCGTACTGTTTGAGACGTCAGGTGGTTTTGCACTCTTTAAAGTATTAGATGAAGGA 60 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGCTAGTACTGTTTGAGACGTCAGGTGGTTTTGCACTCTTTAAAGTATTAGATGAAGGA 60 Query 61 AAGCTCTCTAATGTTGAGGATTTGGGT-ACTGAGTTCTAC-TCTGCAGAGTCAGCTCGAA 118 ||||||||||||||||||||||||||| | |||||||| | ||||||||||||||||||| Sbjct 61 AAGCTCTCTAATGTTGAGGATTTGGGTGA-TGAGTTCT-CGTCTGCAGAGTCAGCTCGAA 118 Query 119 --GG-A--T---G----GGTCTACACAAGTTTTTGAAAAATAACTGTGATGATGGTGAAA 166 || | | | ||||||| |||||| |||||||||||||||| ||||||||||| Sbjct 119 GGGGAACTTCAAGCAAAGGTCTACGCAAGTTCTTGAAAAATAACTGTGGTGATGGTGAAA 178 Query 167 TCTTAGCTGTGGCTGATCCAAAGCTTGGAGATATCATCACAGAGAAACTGGACATAGAAT 226 |||||| ||||||||| |||| ||||| |||| ||||| |||||||||||| || ||| Sbjct 179 CCTTAGCGGTGGCTGATTCAAATATTGGAAATATTATCACTGAGAAACTGGACGTACAAT 238 Query 227 GTGTTCACAACGATGCTGTTATGGAGCTGTTACGAGGTGTGAGAAGTCAGTTAACCGAAC 286 ||||||||||| | |||||||||||||| ||||| ||||||||||| ||||||||||||| Sbjct 239 GTGTTCACAACAACGCTGTTATGGAGCTATTACGCGGTGTGAGAAGCCAGTTAACCGAAC 298 Query 287 TTTTATCCGGATTGGATGATAATGATTTAGCTCCAGTGAGCTTGGAATTGTCTCACATCC 346 |||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||| Sbjct 299 TTTTATCCGGATTGGATGATAACGATTTAGCTCCAATGAGCCTGGAATTGTCTCACATCC 358 Query 347 TTGCTAGATATAAACTAAAAATCACCTCTGA-CA-----AGACCATGATAATCCTA-TCT 399 ||||||||||||||||||||||||||||||| | ||||||||||||||| | | | Sbjct 359 TTGCTAGATATAAACTAAAAATCACCTCTGATAAGGTGGAGACCATGATAATCCAAGT-T 417 Query 400 ATCAGTCTGCTTGATGATCTTGACAAAGAGCTTAACACTTACACTACGAGCGTTTGTGAA 459 || |||| |||||||||||||||||||||| |||||||||| ||| ||| ||| ||||| Sbjct 418 ATTGGTCTTCTTGATGATCTTGACAAAGAGCGTAACACTTACGCTATGAGGGTTCGTGAA 477 Query 460 TTGTACGGTTTGCATTTTCCCGAGCTTGCTAATATTGTACAGGACAATATCTTATATGCC 519 | ||| |||| |||||||||||||||||| || || |||||||||||||||||||||||| Sbjct 478 TGGTATGGTTGGCATTTTCCCGAGCTTGCGAAGATCGTACAGGACAATATCTTATATGCC 537 Query 520 AAGG-TGGTTAAACTAATGGGGAATCGGATTAATGCTGCAACGCTAGACTTCTCTGAGAT 578 |||| | |||||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 538 AAGGCT-GTTAAACTAATGGGGAATCGGATTAATGCTGCAAATCTAGACTTCTCCGAGAT 596 Query 579 ATTGGCTGATGAAGTTGAAGCAGAACTAAAAGAGGCTT-CTATGGTGTCTACGAGAACTG 637 ||||||||||||||||||||||||||| ||||||| || || || | |||| | |||||| Sbjct 597 ATTGGCTGATGAAGTTGAAGCAGAACTTAAAGAGG-TTGCTGTGATATCTATGGGAACTG 655 Query 638 AAGTCAGTGACCTTGATTTGATGCACATCCAAGAACTCTGTGACCAAG-TTCTTTCAATC 696 |||||| ||||||||||||||| ||||||| | |||||||||||| || |||| || | Sbjct 656 AAGTCACTGACCTTGATTTGATTCACATCCGACAACTCTGTGACC-AGATTCTGTCTCTT 714 Query 697 GCTGAGGACAAAACTCTGCTTTGTGACGACTTGAAGAACAAAATGAACAAAATTGCACCA 756 |||||| ||| | ||| |||| |||| ||||||||| | ||||||||||||||||||| Sbjct 715 GCTGAGTACAGAGCTCAGCTTAATGACTACTTGAAGAGTAGAATGAACAAAATTGCACCA 774 Query 757 AATCTAACTGCCCTTGTCGGGGAGCTAGTCGGTGCTCGC-TTAATATCTCATTGTGGTAG 815 ||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||| Sbjct 775 AATCTAACTGCCCTTGTCGGGGAGCTAGTCGGTGCTCGCCTTATT-TCTCATTGTGGTAG 833 Query 816 TTTATGGAACCTCTCAAAGCTACCATGG-AGCACAATTCAGATTCTTGGAGCTGAAAAGA 874 | ||| |||||| |||||||||| ||| ||||| |||||||||||||||||||||||| Sbjct 834 TCTATTAAACCTCGCAAAGCTACC-TGGGAGCACGATTCAGATTCTTGGAGCTGAAAAGG 892 Query 875 CCCTATATAAAGCCCTTAAGACCAAACAAGCCACTCCAAAGTATGGTTTAATCTACCACG 934 ||||||||| ||||| | || || || |||||||||||| | ||| | || ||||| | Sbjct 893 CCCTATATAGAGCCCGCAGGATGAACCACGCCACTCCAAAGCACGGTCTGATTTACCATG 952 Query 935 CACCTTTGGTTAGGCAAGCTGCACCAGAGAACAAGGGTAAAATCGCACGTTCACTAGCTG 994 ||||| ||||||| ||||||||||||||| |||||||||||||| |||| ||| |||||| Sbjct 953 CACCTGTGGTTAGCCAAGCTGCACCAGAGCACAAGGGTAAAATCTCACGGTCATTAGCTG 1012 Query 995 CAAAATCTGCTCTTGCTATCCGGTGTGATGCTTTTGGTAATGGCCAAGACAACACTATGG 1054 ||||| ||| |||||||||||| ||||||||||||||| |||| ||||||||||| |||| Sbjct 1013 CAAAAGCTGTTCTTGCTATCCGTTGTGATGCTTTTGGTGATGGACAAGACAACACAATGG 1072 Query 1055 GAGTCGAAAGCCGCTTAAAGCTTGAAGCGCGCTTGAGAAATCTTGAAGGAGGAGATTTAG 1114 |||| |||| |||||||||||| |||||||| |||||||||||||||||||| ||||||| Sbjct 1073 GAGTGGAAACCCGCTTAAAGCTGGAAGCGCGTTTGAGAAATCTTGAAGGAGGGGATTTAG 1132 Query 1115 GAGCATGCGAAGAAGAAGAAGAAGTTAATGACAAAGATACAAAGAAGGAGGCTGATGATG 1174 |||| | |||||||||||||| ||| | ||||||||| ||||||| |||||||||||| Sbjct 1133 GAGCCTTCGAAGAAGAAGAAGT--TTATT-ACAAAGATAAAAAGAAGAAGGCTGATGATG 1189 Query 1175 AGGAAGAACCCAAAACTGAGGAGTGTTCGAAGAAGAGGAAGAAAGAAGCAGAACTTGAAA 1234 ||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| Sbjct 1190 AGGAAGAACCCAAAACTGAGGAGCCTTCGAAGAAGAAGAAGACAGAAGCAGAACTTGAAA 1249 Query 1235 CCGTGGAAGATCCCGCAAAGAAGAGCAAACAAGAGG 1270 ||| |||| |||| ||||||||| ||||| |||| Sbjct 1250 CCGCCAAAGAGCCCGTAAAGAAGAGTAAACACGAGG 1285 > Ahg489610 jgi|Araly1|489610|fgenesh2_kg.6__2744__AT5G27120.1 Length=1767 Score = 1064 bits (576), Expect = 0.0 Identities = 874/1017 (86%), Gaps = 23/1017 (2%) Strand=Plus/Plus Query 113 CTCGAAGGATGGGTCTACACAAGTTTTTGAAAAATAACTGTGATGATGGTGAAATCTTAG 172 ||| ||| | |||||||| |||||| ||||| |||||||| | |||||||| ||| | Sbjct 267 CTCCAAGCAAGGGTCTACGCAAGTTCTTGAAGGCTAACTGTG-T--TGGTGAAACCTTGG 323 Query 173 CTGTGGCTGATCCAAAGCTTGGAGATATCATCACA-GAGAAACTGGACATAGAATGTGTT 231 |||| |||||| | ||||||||| ||||||||| | ||||||||| | ||||| |||||| Sbjct 324 CTGTTGCTGATTCTAAGCTTGGAAATATCATCA-AGGAGAAACTGAAAATAGACTGTGTT 382 Query 232 CACAACGATGCTGTTATGGAGCTGTTACGAGGTGTGAGAAGTCAGTTAACCGAACTTTTA 291 |||||| |||||||||||||||||||||||||||| ||||| ||| ||| |||||| || Sbjct 383 CACAACAATGCTGTTATGGAGCTGTTACGAGGTGTTAGAAGCCAGCTAAGTGAACTTATA 442 Query 292 TCCGGATT-GGATGATAATGATTTAGCTCCAGTGAGCTTGGAATTGTCTCACATCCTTGC 350 || ||||| ||| ||||| ||| |||||||| ||||||||| |||||||||| |||||| Sbjct 443 TCTGGATTGGGA-GATAAAGATCTAGCTCCAATGAGCTTGGGGTTGTCTCACAGCCTTGC 501 Query 351 TAGATATAAACTAAAAATCACCT-CTGACAA----G--ACCATGATAATCCTATCTATCA 403 |||||||||||||| ||| | | ||||| | || |||||||||| | |||| Sbjct 502 CAGATATAAACTAAAGTTCA-GTACCGACAAGGTGGATACTATGATAATCCAAGCTATTG 560 Query 404 GTCTGCTTGATGATCTTGACAAAGAGCTTAACACTTACACTACGAGCGTTTGTGAATTGT 463 |||||||||||||||||||||||||||| ||||| ||| ||| ||| ||| |||||| || Sbjct 561 GTCTGCTTGATGATCTTGACAAAGAGCTCAACACGTACGCTATGAGGGTTCGTGAATGGT 620 Query 464 ACGGTTTGCATTTTCCCGAGCTTGCTAATATTGTACAGGACAATATCTTATATGCCAAGG 523 | |||| ||||||||| ||||||||||| || |||||||||||||||||||||||||||| Sbjct 621 ATGGTTGGCATTTTCCTGAGCTTGCTAAGATCGTACAGGACAATATCTTATATGCCAAGG 680 Query 524 -TGGTTAAACTAATGGGGAATCGGATTAATGCTGCAACGCTAGACTTCTCTGAGATATTG 582 | |||||||| |||||||||||| |||||||||||| |||||||||||||||||||||| Sbjct 681 CT-GTTAAACTTATGGGGAATCGGGTTAATGCTGCAAAGCTAGACTTCTCTGAGATATTG 739 Query 583 GCTGATGAAGTTGAAGCAGAACTAAAAGAGGCTTCTATGGTGTCTACGAGAACTGAAGTC 642 ||||||||||||||||||||||| ||||||||| || || | |||| | |||||||||| Sbjct 740 GCTGATGAAGTTGAAGCAGAACTGAAAGAGGCTGCTGTGATATCTATGGGAACTGAAGTA 799 Query 643 AGTGACCTTGATTTGAT-GCACATCCAAGAACTCTGTGACCAAGTTCTTTCAATCGCTGA 701 || ||||||||||| || |||||||| ||||||||||||||| |||||||| | ||||| Sbjct 800 AGCGACCTTGATTT-ATTGCACATCCGAGAACTCTGTGACCAGGTTCTTTCTCTTGCTGA 858 Query 702 GGACAAAACTCTGCTTTGTGACGACTTGAAGAACAAAATGAACAAAATTGCACCAAATCT 761 | ||| | ||| ||||| |||| ||||||||| || |||||||| ||||||||||||||| Sbjct 859 GTACAGAGCTCAGCTTTTTGACTACTTGAAGAGCAGAATGAACACAATTGCACCAAATCT 918 Query 762 AACTGCCCTTGTCGGGGAGCTAGTCGGTGCTCGCTTAATATCTCATTGTGGTAGTTTATG 821 |||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 919 TTCTGCCCTTGTCGGGGAGCTAGTCGGTGCTCGCTTAATATCTCATGGTGGTAGTTTGTT 978 Query 822 GAACCTCTCAAAGCTACCATGGA-GCACAATTCAGATTCTTGGAGCTGAAAAGACCCT-A 879 |||||| |||||| ||| |||| |||||||||||||||||||||||||||| | ||| | Sbjct 979 GAACCTGGCAAAGCAACC-TGGAAGCACAATTCAGATTCTTGGAGCTGAAAA-AGCCTTA 1036 Query 880 TATAAAGCCCTTAAGACCAAACAAGCCACTCCAAAGTATGGTTTAATCTACCACGCACCT 939 | || ||||||||||||||| || |||||||||||||||||| || | ||||||||| || Sbjct 1037 TTTAGAGCCCTTAAGACCAAGCACGCCACTCCAAAGTATGGTCTACTTTACCACGCATCT 1096 Query 940 TTGGTTAGGCAAGCTGCACCAGAGAACAAGGGTAAAATCGCACGTTCACTAGCTGCAAAA 999 ||||| | ||| || ||||| |||||||||||||||| |||| ||| ||||||||||| Sbjct 1097 GTGGTTTGCCAAACTACACCAAAGAACAAGGGTAAAATTTCACGGTCATTAGCTGCAAAA 1156 Query 1000 TCTGCTCTTGCTATCCGGTGTGATGCTTTTGGTAATGGCCAAGACAACACTATGGGAGTC 1059 ||| |||||||||||| |||||||| ||||| ||||||||||||||||||||||||| Sbjct 1157 GCTGTTCTTGCTATCCGTTGTGATGCCCTTGGTGATGGCCAAGACAACACTATGGGAGTG 1216 Query 1060 GAAAGCCGCTTAAAGCTTGAAGCGCGCTTGAGAAATCTTGAAGGAGGAGATTTAGGA 1116 |||| |||||||||||||||||| || ||||||| ||| |||||| |||||||||| Sbjct 1217 GAAAACCGCTTAAAGCTTGAAGCACGGTTGAGAACTCTCGAAGGAAAAGATTTAGGA 1273 Score = 152 bits (82), Expect = 6e-36 Identities = 112/126 (89%), Gaps = 4/126 (3%) Strand=Plus/Plus Query 1 ATGCTCGTACTGTTTGAGACGTCAGGTGGTTTTGCACTCTTTAAAGTATTAGATGAAGGA 60 |||| | |||||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 68 ATGCACATACTGTTTGAGACGCCAGGTGGTTTTGCAATCTTTAAAGTATTAGATGAAGGA 127 Query 61 AAGCTCTCTAATGTTGAGGATTTGGGTACTGAGTTCT--ACTCTGCAGAGTCAGCTCGAA 118 ||||||||||||||||||||| | |||| |||||||| || | ||| ||||||| |||| Sbjct 128 AAGCTCTCTAATGTTGAGGATATCGGTAATGAGTTCTTGAC-C-GCAAAGTCAGCCCGAA 185 Query 119 GGATGG 124 ||||| Sbjct 186 AGATGG 191 Score = 91.6 bits (49), Expect = 1e-17 Identities = 103/126 (82%), Gaps = 15/126 (12%) Strand=Plus/Plus Query 1156 AAGAAGGAGGCTGATGATGAGGAAGAACCCAAAACTGAGGAGTGTTCGAAGAAGA-G--G 1212 |||||| ||||||||||||||||||||||||||||||||||| ||||||||||| | | Sbjct 1457 AAGAAGAAGGCTGATGATGAGGAAGAACCCAAAACTGAGGAGCCTTCGAAGAAGAAGTCG 1516 Query 1213 AAGAA-A-GAA-------GCAGAACTTGAAACCGTGGAAGATCCCGCAAAGAAG-AGCAA 1262 ||||| | ||| ||||||| |||||||| ||||| || ||||||||| || || Sbjct 1517 AAGAAGAAGAAAACAAAAGCAGAACCTGAAACCGCCGAAGAGCCTGCAAAGAAGGAG-AA 1575 Query 1263 ACAAGA 1268 | |||| Sbjct 1576 A-AAGA 1580 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50055390021 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5