BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27140.1
Length=1338
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326985 jgi|Araly1|326985|fgenesh1_pm.C_scaffold_6002205 1489 0.0
Ahg489610 jgi|Araly1|489610|fgenesh2_kg.6__2744__AT5G27120.1 1064 0.0
> Ahg326985 jgi|Araly1|326985|fgenesh1_pm.C_scaffold_6002205
Length=1362
Score = 1489 bits (806), Expect = 0.0
Identities = 1139/1296 (88%), Gaps = 37/1296 (3%)
Strand=Plus/Plus
Query 1 ATGCTCGTACTGTTTGAGACGTCAGGTGGTTTTGCACTCTTTAAAGTATTAGATGAAGGA 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCTAGTACTGTTTGAGACGTCAGGTGGTTTTGCACTCTTTAAAGTATTAGATGAAGGA 60
Query 61 AAGCTCTCTAATGTTGAGGATTTGGGT-ACTGAGTTCTAC-TCTGCAGAGTCAGCTCGAA 118
||||||||||||||||||||||||||| | |||||||| | |||||||||||||||||||
Sbjct 61 AAGCTCTCTAATGTTGAGGATTTGGGTGA-TGAGTTCT-CGTCTGCAGAGTCAGCTCGAA 118
Query 119 --GG-A--T---G----GGTCTACACAAGTTTTTGAAAAATAACTGTGATGATGGTGAAA 166
|| | | | ||||||| |||||| |||||||||||||||| |||||||||||
Sbjct 119 GGGGAACTTCAAGCAAAGGTCTACGCAAGTTCTTGAAAAATAACTGTGGTGATGGTGAAA 178
Query 167 TCTTAGCTGTGGCTGATCCAAAGCTTGGAGATATCATCACAGAGAAACTGGACATAGAAT 226
|||||| ||||||||| |||| ||||| |||| ||||| |||||||||||| || |||
Sbjct 179 CCTTAGCGGTGGCTGATTCAAATATTGGAAATATTATCACTGAGAAACTGGACGTACAAT 238
Query 227 GTGTTCACAACGATGCTGTTATGGAGCTGTTACGAGGTGTGAGAAGTCAGTTAACCGAAC 286
||||||||||| | |||||||||||||| ||||| ||||||||||| |||||||||||||
Sbjct 239 GTGTTCACAACAACGCTGTTATGGAGCTATTACGCGGTGTGAGAAGCCAGTTAACCGAAC 298
Query 287 TTTTATCCGGATTGGATGATAATGATTTAGCTCCAGTGAGCTTGGAATTGTCTCACATCC 346
|||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||
Sbjct 299 TTTTATCCGGATTGGATGATAACGATTTAGCTCCAATGAGCCTGGAATTGTCTCACATCC 358
Query 347 TTGCTAGATATAAACTAAAAATCACCTCTGA-CA-----AGACCATGATAATCCTA-TCT 399
||||||||||||||||||||||||||||||| | ||||||||||||||| | | |
Sbjct 359 TTGCTAGATATAAACTAAAAATCACCTCTGATAAGGTGGAGACCATGATAATCCAAGT-T 417
Query 400 ATCAGTCTGCTTGATGATCTTGACAAAGAGCTTAACACTTACACTACGAGCGTTTGTGAA 459
|| |||| |||||||||||||||||||||| |||||||||| ||| ||| ||| |||||
Sbjct 418 ATTGGTCTTCTTGATGATCTTGACAAAGAGCGTAACACTTACGCTATGAGGGTTCGTGAA 477
Query 460 TTGTACGGTTTGCATTTTCCCGAGCTTGCTAATATTGTACAGGACAATATCTTATATGCC 519
| ||| |||| |||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct 478 TGGTATGGTTGGCATTTTCCCGAGCTTGCGAAGATCGTACAGGACAATATCTTATATGCC 537
Query 520 AAGG-TGGTTAAACTAATGGGGAATCGGATTAATGCTGCAACGCTAGACTTCTCTGAGAT 578
|||| | |||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 538 AAGGCT-GTTAAACTAATGGGGAATCGGATTAATGCTGCAAATCTAGACTTCTCCGAGAT 596
Query 579 ATTGGCTGATGAAGTTGAAGCAGAACTAAAAGAGGCTT-CTATGGTGTCTACGAGAACTG 637
||||||||||||||||||||||||||| ||||||| || || || | |||| | ||||||
Sbjct 597 ATTGGCTGATGAAGTTGAAGCAGAACTTAAAGAGG-TTGCTGTGATATCTATGGGAACTG 655
Query 638 AAGTCAGTGACCTTGATTTGATGCACATCCAAGAACTCTGTGACCAAG-TTCTTTCAATC 696
|||||| ||||||||||||||| ||||||| | |||||||||||| || |||| || |
Sbjct 656 AAGTCACTGACCTTGATTTGATTCACATCCGACAACTCTGTGACC-AGATTCTGTCTCTT 714
Query 697 GCTGAGGACAAAACTCTGCTTTGTGACGACTTGAAGAACAAAATGAACAAAATTGCACCA 756
|||||| ||| | ||| |||| |||| ||||||||| | |||||||||||||||||||
Sbjct 715 GCTGAGTACAGAGCTCAGCTTAATGACTACTTGAAGAGTAGAATGAACAAAATTGCACCA 774
Query 757 AATCTAACTGCCCTTGTCGGGGAGCTAGTCGGTGCTCGC-TTAATATCTCATTGTGGTAG 815
||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||
Sbjct 775 AATCTAACTGCCCTTGTCGGGGAGCTAGTCGGTGCTCGCCTTATT-TCTCATTGTGGTAG 833
Query 816 TTTATGGAACCTCTCAAAGCTACCATGG-AGCACAATTCAGATTCTTGGAGCTGAAAAGA 874
| ||| |||||| |||||||||| ||| ||||| ||||||||||||||||||||||||
Sbjct 834 TCTATTAAACCTCGCAAAGCTACC-TGGGAGCACGATTCAGATTCTTGGAGCTGAAAAGG 892
Query 875 CCCTATATAAAGCCCTTAAGACCAAACAAGCCACTCCAAAGTATGGTTTAATCTACCACG 934
||||||||| ||||| | || || || |||||||||||| | ||| | || ||||| |
Sbjct 893 CCCTATATAGAGCCCGCAGGATGAACCACGCCACTCCAAAGCACGGTCTGATTTACCATG 952
Query 935 CACCTTTGGTTAGGCAAGCTGCACCAGAGAACAAGGGTAAAATCGCACGTTCACTAGCTG 994
||||| ||||||| ||||||||||||||| |||||||||||||| |||| ||| ||||||
Sbjct 953 CACCTGTGGTTAGCCAAGCTGCACCAGAGCACAAGGGTAAAATCTCACGGTCATTAGCTG 1012
Query 995 CAAAATCTGCTCTTGCTATCCGGTGTGATGCTTTTGGTAATGGCCAAGACAACACTATGG 1054
||||| ||| |||||||||||| ||||||||||||||| |||| ||||||||||| ||||
Sbjct 1013 CAAAAGCTGTTCTTGCTATCCGTTGTGATGCTTTTGGTGATGGACAAGACAACACAATGG 1072
Query 1055 GAGTCGAAAGCCGCTTAAAGCTTGAAGCGCGCTTGAGAAATCTTGAAGGAGGAGATTTAG 1114
|||| |||| |||||||||||| |||||||| |||||||||||||||||||| |||||||
Sbjct 1073 GAGTGGAAACCCGCTTAAAGCTGGAAGCGCGTTTGAGAAATCTTGAAGGAGGGGATTTAG 1132
Query 1115 GAGCATGCGAAGAAGAAGAAGAAGTTAATGACAAAGATACAAAGAAGGAGGCTGATGATG 1174
|||| | |||||||||||||| ||| | ||||||||| ||||||| ||||||||||||
Sbjct 1133 GAGCCTTCGAAGAAGAAGAAGT--TTATT-ACAAAGATAAAAAGAAGAAGGCTGATGATG 1189
Query 1175 AGGAAGAACCCAAAACTGAGGAGTGTTCGAAGAAGAGGAAGAAAGAAGCAGAACTTGAAA 1234
||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct 1190 AGGAAGAACCCAAAACTGAGGAGCCTTCGAAGAAGAAGAAGACAGAAGCAGAACTTGAAA 1249
Query 1235 CCGTGGAAGATCCCGCAAAGAAGAGCAAACAAGAGG 1270
||| |||| |||| ||||||||| ||||| ||||
Sbjct 1250 CCGCCAAAGAGCCCGTAAAGAAGAGTAAACACGAGG 1285
> Ahg489610 jgi|Araly1|489610|fgenesh2_kg.6__2744__AT5G27120.1
Length=1767
Score = 1064 bits (576), Expect = 0.0
Identities = 874/1017 (86%), Gaps = 23/1017 (2%)
Strand=Plus/Plus
Query 113 CTCGAAGGATGGGTCTACACAAGTTTTTGAAAAATAACTGTGATGATGGTGAAATCTTAG 172
||| ||| | |||||||| |||||| ||||| |||||||| | |||||||| ||| |
Sbjct 267 CTCCAAGCAAGGGTCTACGCAAGTTCTTGAAGGCTAACTGTG-T--TGGTGAAACCTTGG 323
Query 173 CTGTGGCTGATCCAAAGCTTGGAGATATCATCACA-GAGAAACTGGACATAGAATGTGTT 231
|||| |||||| | ||||||||| ||||||||| | ||||||||| | ||||| ||||||
Sbjct 324 CTGTTGCTGATTCTAAGCTTGGAAATATCATCA-AGGAGAAACTGAAAATAGACTGTGTT 382
Query 232 CACAACGATGCTGTTATGGAGCTGTTACGAGGTGTGAGAAGTCAGTTAACCGAACTTTTA 291
|||||| |||||||||||||||||||||||||||| ||||| ||| ||| |||||| ||
Sbjct 383 CACAACAATGCTGTTATGGAGCTGTTACGAGGTGTTAGAAGCCAGCTAAGTGAACTTATA 442
Query 292 TCCGGATT-GGATGATAATGATTTAGCTCCAGTGAGCTTGGAATTGTCTCACATCCTTGC 350
|| ||||| ||| ||||| ||| |||||||| ||||||||| |||||||||| ||||||
Sbjct 443 TCTGGATTGGGA-GATAAAGATCTAGCTCCAATGAGCTTGGGGTTGTCTCACAGCCTTGC 501
Query 351 TAGATATAAACTAAAAATCACCT-CTGACAA----G--ACCATGATAATCCTATCTATCA 403
|||||||||||||| ||| | | ||||| | || |||||||||| | ||||
Sbjct 502 CAGATATAAACTAAAGTTCA-GTACCGACAAGGTGGATACTATGATAATCCAAGCTATTG 560
Query 404 GTCTGCTTGATGATCTTGACAAAGAGCTTAACACTTACACTACGAGCGTTTGTGAATTGT 463
|||||||||||||||||||||||||||| ||||| ||| ||| ||| ||| |||||| ||
Sbjct 561 GTCTGCTTGATGATCTTGACAAAGAGCTCAACACGTACGCTATGAGGGTTCGTGAATGGT 620
Query 464 ACGGTTTGCATTTTCCCGAGCTTGCTAATATTGTACAGGACAATATCTTATATGCCAAGG 523
| |||| ||||||||| ||||||||||| || ||||||||||||||||||||||||||||
Sbjct 621 ATGGTTGGCATTTTCCTGAGCTTGCTAAGATCGTACAGGACAATATCTTATATGCCAAGG 680
Query 524 -TGGTTAAACTAATGGGGAATCGGATTAATGCTGCAACGCTAGACTTCTCTGAGATATTG 582
| |||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 681 CT-GTTAAACTTATGGGGAATCGGGTTAATGCTGCAAAGCTAGACTTCTCTGAGATATTG 739
Query 583 GCTGATGAAGTTGAAGCAGAACTAAAAGAGGCTTCTATGGTGTCTACGAGAACTGAAGTC 642
||||||||||||||||||||||| ||||||||| || || | |||| | ||||||||||
Sbjct 740 GCTGATGAAGTTGAAGCAGAACTGAAAGAGGCTGCTGTGATATCTATGGGAACTGAAGTA 799
Query 643 AGTGACCTTGATTTGAT-GCACATCCAAGAACTCTGTGACCAAGTTCTTTCAATCGCTGA 701
|| ||||||||||| || |||||||| ||||||||||||||| |||||||| | |||||
Sbjct 800 AGCGACCTTGATTT-ATTGCACATCCGAGAACTCTGTGACCAGGTTCTTTCTCTTGCTGA 858
Query 702 GGACAAAACTCTGCTTTGTGACGACTTGAAGAACAAAATGAACAAAATTGCACCAAATCT 761
| ||| | ||| ||||| |||| ||||||||| || |||||||| |||||||||||||||
Sbjct 859 GTACAGAGCTCAGCTTTTTGACTACTTGAAGAGCAGAATGAACACAATTGCACCAAATCT 918
Query 762 AACTGCCCTTGTCGGGGAGCTAGTCGGTGCTCGCTTAATATCTCATTGTGGTAGTTTATG 821
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 919 TTCTGCCCTTGTCGGGGAGCTAGTCGGTGCTCGCTTAATATCTCATGGTGGTAGTTTGTT 978
Query 822 GAACCTCTCAAAGCTACCATGGA-GCACAATTCAGATTCTTGGAGCTGAAAAGACCCT-A 879
|||||| |||||| ||| |||| |||||||||||||||||||||||||||| | ||| |
Sbjct 979 GAACCTGGCAAAGCAACC-TGGAAGCACAATTCAGATTCTTGGAGCTGAAAA-AGCCTTA 1036
Query 880 TATAAAGCCCTTAAGACCAAACAAGCCACTCCAAAGTATGGTTTAATCTACCACGCACCT 939
| || ||||||||||||||| || |||||||||||||||||| || | ||||||||| ||
Sbjct 1037 TTTAGAGCCCTTAAGACCAAGCACGCCACTCCAAAGTATGGTCTACTTTACCACGCATCT 1096
Query 940 TTGGTTAGGCAAGCTGCACCAGAGAACAAGGGTAAAATCGCACGTTCACTAGCTGCAAAA 999
||||| | ||| || ||||| |||||||||||||||| |||| ||| |||||||||||
Sbjct 1097 GTGGTTTGCCAAACTACACCAAAGAACAAGGGTAAAATTTCACGGTCATTAGCTGCAAAA 1156
Query 1000 TCTGCTCTTGCTATCCGGTGTGATGCTTTTGGTAATGGCCAAGACAACACTATGGGAGTC 1059
||| |||||||||||| |||||||| ||||| |||||||||||||||||||||||||
Sbjct 1157 GCTGTTCTTGCTATCCGTTGTGATGCCCTTGGTGATGGCCAAGACAACACTATGGGAGTG 1216
Query 1060 GAAAGCCGCTTAAAGCTTGAAGCGCGCTTGAGAAATCTTGAAGGAGGAGATTTAGGA 1116
|||| |||||||||||||||||| || ||||||| ||| |||||| ||||||||||
Sbjct 1217 GAAAACCGCTTAAAGCTTGAAGCACGGTTGAGAACTCTCGAAGGAAAAGATTTAGGA 1273
Score = 152 bits (82), Expect = 6e-36
Identities = 112/126 (89%), Gaps = 4/126 (3%)
Strand=Plus/Plus
Query 1 ATGCTCGTACTGTTTGAGACGTCAGGTGGTTTTGCACTCTTTAAAGTATTAGATGAAGGA 60
|||| | |||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 68 ATGCACATACTGTTTGAGACGCCAGGTGGTTTTGCAATCTTTAAAGTATTAGATGAAGGA 127
Query 61 AAGCTCTCTAATGTTGAGGATTTGGGTACTGAGTTCT--ACTCTGCAGAGTCAGCTCGAA 118
||||||||||||||||||||| | |||| |||||||| || | ||| ||||||| ||||
Sbjct 128 AAGCTCTCTAATGTTGAGGATATCGGTAATGAGTTCTTGAC-C-GCAAAGTCAGCCCGAA 185
Query 119 GGATGG 124
|||||
Sbjct 186 AGATGG 191
Score = 91.6 bits (49), Expect = 1e-17
Identities = 103/126 (82%), Gaps = 15/126 (12%)
Strand=Plus/Plus
Query 1156 AAGAAGGAGGCTGATGATGAGGAAGAACCCAAAACTGAGGAGTGTTCGAAGAAGA-G--G 1212
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||| | |
Sbjct 1457 AAGAAGAAGGCTGATGATGAGGAAGAACCCAAAACTGAGGAGCCTTCGAAGAAGAAGTCG 1516
Query 1213 AAGAA-A-GAA-------GCAGAACTTGAAACCGTGGAAGATCCCGCAAAGAAG-AGCAA 1262
||||| | ||| ||||||| |||||||| ||||| || ||||||||| || ||
Sbjct 1517 AAGAAGAAGAAAACAAAAGCAGAACCTGAAACCGCCGAAGAGCCTGCAAAGAAGGAG-AA 1575
Query 1263 ACAAGA 1268
| ||||
Sbjct 1576 A-AAGA 1580
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50055390021
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5