BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27150.1
Length=2334
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942396 jgi|Araly1|942396|scaffold_602940.1 2872 0.0
Ahg477785 jgi|Araly1|477785|fgenesh2_kg.3__486__AT3G05030.1 1458 0.0
> Ahg942396 jgi|Araly1|942396|scaffold_602940.1
Length=1837
Score = 2872 bits (1555), Expect = 0.0
Identities = 1725/1807 (95%), Gaps = 12/1807 (1%)
Strand=Plus/Plus
Query 477 GATTCTCTAGTGTCGAAACTGCCTTCGTTATCGACATCTGATCACGCTTCTGTGGTTGCG 536
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 41 GATTCTTTAGTGTCGAAACTGCCTTCGTTATCGACATCTGATCACGCTTCTGTTGTTGCG 100
Query 537 TTGAATCTCTTTGTTGCACTTCTTTGTGCTTGTATTGTTCTTGGTCATCTTTTGGAAGAG 596
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 101 TTGAATCTCTTTGTTGCACTTCTTTGTGCTTGTATTGTTCTTGGTCATCTTTTGGAGGAG 160
Query 597 AATAGATGGATGAACGAATCCATCACCGCCTTGTTGATTGGGCTAGGCACTGGTGTTACC 656
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 161 AATCGATGGATGAACGAATCCATCACCGCCTTATTGATTGGGCTAGGCACTGGTGTTGCC 220
Query 657 ATTTTGTTGATTAGTAAAGGAAAAAGCTCGCATCTTCTCGTCTTTAGTGAAGATCTTTTC 716
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 221 ATTTTGTTGATTAGTAAAGGAAAAAGCTCACATCTTCTCGTCTTTAGTGAAGATCTTTTC 280
Query 717 TTCATATATCTTTTGCCACCCATTATATTCAATGCAGGGTTTCAAGTAAAAAAGAAGCAG 776
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 281 TTCATATATCTTTTGCCACCCATTATATTCAATGCAGGGTTTCAAGTTAAAAAGAAGCAG 340
Query 777 TTTTTCCGCAATTTCGTGACTATTATGCTTTTTGGTGCTGTTGGGACTATTATTTCTTGC 836
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 341 TTTTTCCGCAATTTCGTGACTATTATGCTTTTTGGTGCTGTTGGGACTATTGTTTCTTGC 400
Query 837 ACAATCATATCTCTAGGTGTAACACAGTTCTTTAAGAAGTTGGACATTGGAACCTTTGAC 896
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 401 ACAATCATATCTCTAGGTGTAACACAGTTCTTTAAGAAATTGGACATTGGGACCTTTGAC 460
Query 897 TTGGGTGATTATCTTGCTATTGGTGCCATATTTGCTGCAACAGATTCAGTATGTACACTG 956
|||||||||||||||||||| ||||| |||||||| ||||||||||| || |||||||||
Sbjct 461 TTGGGTGATTATCTTGCTATCGGTGCAATATTTGCCGCAACAGATTCTGTGTGTACACTG 520
Query 957 CAGGTTCTGAATCAAGACGAGACACCTTTGCTTTACAGTCTTGTATTCGGAGAGGGTGTT 1016
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 CAGGTTCTGAATCAAGATGAGACACCTTTGCTTTACAGTCTTGTATTCGGAGAGGGTGTT 580
Query 1017 GTGAATGATGCAACGTCAGTTGTGGTCTTCAACGCGATTCAGAGCTTTGATCTCACTCAC 1076
||||||||||| || |||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct 581 GTGAATGATGCCACATCAGTTGTTGTCTTCAATGCGATTCAGAGCTTTGACCTCACTCAC 640
Query 1077 CTAAACCACGAAGCTGCTTTTCATCTTCTTGGAAACTTCTTGTATTTGTTTCTCCTAAGT 1136
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 641 CTAAACCATGAAGCTGCTTTTCATCTTCTTGGAAACTTCTTGTATTTGTTTCTCCTAAGT 700
Query 1137 ACCTTGCTTGGTGCTGCAACCGGTCTGATAAGTGCGTATGTTATCAAGAAGCTATACTTT 1196
|||||||||||||||||||||||| |||||||||||||||| ||||||||| |||| |||
Sbjct 701 ACCTTGCTTGGTGCTGCAACCGGTTTGATAAGTGCGTATGTCATCAAGAAGTTATATTTT 760
Query 1197 GGAAGGCACTCAACTGACCGAGAGGTTGCCCTTATGATGCTTATGGCGTATCTTTCTTAT 1256
|||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 761 GGAAGGCACTCAACAGACCGAGAAGTTGCCCTTATGATGCTTATGGCATATCTTTCTTAT 820
Query 1257 ATGCTTGCTGAGCTTTTCGACTTGAGCGGTATCCTCACTGTGTTTTTCTGTGGTATTGTG 1316
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 821 ATGCTTGCTGAGCTTTTCGACTTGAGTGGTATTCTCACTGTGTTTTTCTGTGGTATTGTG 880
Query 1317 ATGTCCCATTACACATGGCACAATGTAACGGAGAGCTCAAGAATAACAACAAAGCATACC 1376
||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||
Sbjct 881 ATGTCCCATTACACATGGCACAACGTAACGGAGAGCTCAAGAATTACTACAAAGCATACC 940
Query 1377 TTTGCAACTTTGTCATTTCTTGCGGAGACATTTATTTTCTTGTATGTTGGAATGGATGCC 1436
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 941 TTTGCAACATTGTCGTTTCTTGCGGAGACATTTATTTTCTTGTATGTTGGAATGGATGCC 1000
Query 1437 TTGGACATTGACAAGTGGAGATCCGTGAGTGACACACCGGGAACATCGATCGCAGTGAGC 1496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 TTGGACATTGACAAGTGGAGATCCGTGAGTGACACACCGGGAACATCGATCGCAGTGAGC 1060
Query 1497 TCAATCCTAATGGGTCTGGTCATGGTTGGAAGAGCAGCGTTCGTCTTTCCGTTATCGTTT 1556
|||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||
Sbjct 1061 TCAATCCTAATGGGTCTGGTCATGCTTGGAAGAGCAGCATTTGTCTTTCCGTTATCGTTT 1120
Query 1557 CTATCTAACTTAGCCAAGAAGAATCAAAGCGAGAAAATCAACTTTAACATGCAGGTTGTG 1616
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1121 CTATCTAACCTAGCCAAGAAGAACCAAAGCGAGAAAATCAACTTTAACATGCAGGTTGTG 1180
Query 1617 ATTTGGTGGTCTGGTCTCATGAGAGGTGCTGTATCTATGGCTCTTGCATACAACAAGTTT 1676
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1181 ATTTGGTGGTCTGGTCTTATGAGAGGTGCTGTATCTATGGCTCTTGCATACAATAAGTTT 1240
Query 1677 ACAAGGGCCGGGCACACAGATGTACGCGGGAATGCAATCATGATCACGAGTACGATAACT 1736
|||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1241 ACAAGGGCCGGGCAAACAGATGTACGAGGGAATGCAATCATGATCACCAGTACGATAACC 1300
Query 1737 GTCTGTCTTTTTAGCACAGTGGTGTTTGGTATGCTGACCAAACCACTCATAAGCTACCTA 1796
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1301 GTCTGTCTTTTTAGCACAGTGGTGTTTGGTATGCTGACCAAACCGCTCATAAGCTACCTA 1360
Query 1797 TTACCGCACCAGAACGCCACCACGAGCATGTTATCTGATGACAACACCCCAAAATCCATA 1856
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1361 TTGCCGCACCAGAACGCCACCACGAGCATGTTATCTGATGACAACACCCCAAAATCCATC 1420
Query 1857 CATATCCCTTTGTTGGACCAAGACTCGTTCATTGAGCCTTCAGGGAACCACAATGTGCCT 1916
|||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1421 CATATCCCTTTGCTAGACCAAGACTCATTCATTGAGCCTTCAGGGAACCACAATGTGCCT 1480
Query 1917 CGGCCTGACAGTATACGTGGCTTCTTGACACGGCCCACTCGAACCGTGCATTACTACTGG 1976
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 CGGCCTGATAGTATACGTGGCTTCTTGACACGGCCCACTCGAACCGTGCATTACTACTGG 1540
Query 1977 AGACAATTTGATGACTCCTTCATGCGACCCGTCTTTGGAGGTCGTGGCTTTGTACCCTTT 2036
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1541 AGACAATTTGATGACTCCTTCATGCGACCCGTCTTTGGAGGTCGTGGCTTTGT-CCCTTT 1599
Query 2037 -GTTCCAGGTTCTCCAACTGAGAGAAACCCTCCTGATCTTAGTAAGGCTTGAGGGTAACG 2095
|| || |||||||||||||||||||||||||||||||| |||||||| ||||| || |
Sbjct 1600 CGTCCCTGGTTCTCCAACTGAGAGAAACCCTCCTGATCTCAGTAAGGCCTGAGGAAAATG 1659
Query 2096 TGGAAGA-AAAGCTTTGAttttttttGGTAGAAAAGGGTGATTCAAATTATGCTTTTGTG 2154
|||| | |||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1660 CGGAA-ATAAAGCTTTAATTTTT---GGTAGAAAAGGGTGATTCAAATTATGCTTTTGTG 1715
Query 2155 TAAATTATCCATTTGTAATATTGTTTGTGAGGACAGAAATCTGTCCTAACGTTTTGAGAG 2214
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1716 TAAATTATCCATTTGTAATATTGTTTGTGAGGACAGAAATTTGTCCCAACGTTTTGAGAG 1775
Query 2215 CAGAAAGCAAAACATGGCAACTTTGAAGTGTTTGATTGATGTATGTAATTATATTCATAT 2274
|||||| |||| ||||| |||||||||| |||||||||| ||||||| | || | |||||
Sbjct 1776 CAGAAAACAAA-CATGGAAACTTTGAAGGGTTTGATTGACGTATGTA-T-AT-T-CATAT 1830
Query 2275 TTGTTTT 2281
|||||||
Sbjct 1831 TTGTTTT 1837
> Ahg477785 jgi|Araly1|477785|fgenesh2_kg.3__486__AT3G05030.1
Length=1632
Score = 1458 bits (789), Expect = 0.0
Identities = 1336/1597 (84%), Gaps = 49/1597 (3%)
Strand=Plus/Plus
Query 513 TCTGATCACGCTTCTGTGGTTGCGTTGAATCTCTTTGTTGCACTTCTTTGTGCTTGTATT 572
||||| ||||| ||||||||| | | |||||||||||||| ||||| |||||||||||
Sbjct 49 TCTGACCACGCCTCTGTGGTTTCACTCAATCTCTTTGTTGCCCTTCTATGTGCTTGTATC 108
Query 573 GTTCTTGGTCATCTTTTGGAAGAGAATAGATGGATGAACGAATCCATCACCGCCTTGTTG 632
|| |||| |||||| |||| |||||| |||||||||||||||| ||||| || || |||
Sbjct 109 GTGATTGGGCATCTTCTGGAGGAGAATCGATGGATGAACGAATCTATCACAGCTTTATTG 168
Query 633 ATTGGGCTAGGCACTGGTGTTACCATTTTGTTGATTAGTA-AAGGAAAAAGCTCGCATCT 691
|||||||| |||||||||| ||||||||||||||||| | ||||||| ||| |||||
Sbjct 169 ATTGGGCTTTGCACTGGTGTCGTCATTTTGTTGATTAGTAGAGGGAAAAA-CTCACATCT 227
Query 692 -TCTCGTCTTTAGTGAAGATCTTTTCTTCATATATCTTTTGCCACCCATTATATTCAATG 750
| | ||||| || |||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 228 GT-TGGTCTTCAGCGAAGATCTTTTCTTTATATATCTTTTGCCACCCATAATATTCAATG 286
Query 751 CAGGGTTTCAAGTAAAAAAGAAGCAGTTTTTCCGCAATTTCGTGACTATTAT-GCTTTTT 809
|||| |||||||||||||||||||| |||||||| ||||| || ||||| || || ||||
Sbjct 287 CAGGATTTCAAGTAAAAAAGAAGCAATTTTTCCGAAATTTTGTAACTATCATGGC-TTTT 345
Query 810 GGTGCTGTTGGGACTATTA-TTTCTTGCACAATCATATCTCTAGGTGTAACACAGTTCTT 868
|| || | ||||| || |||||||||| || |||||||| |||| || ||||||||
Sbjct 346 GGCGCCATCGGGAC-CGTAGTTTCTTGCACCATAATATCTCTCGGTGCAATTCAGTTCTT 404
Query 869 TAAGAAGTTGGACATTGGAACCTTTGACTTGGGTGATTATCTTGCTATTGGTGCCATATT 928
|||||| || |||||||| ||||||||||| || |||| |||||| || || ||||||||
Sbjct 405 TAAGAAATTAGACATTGGGACCTTTGACTTAGGCGATTTTCTTGCAATCGGCGCCATATT 464
Query 929 TGCTGCAACAGATTCAGTATGTACACTGCAGGTTCTGAATCAAGACGAGACACCTTTGCT 988
||||||||| || || ||||| || ||||||||||| |||||||| ||||||||||||||
Sbjct 465 TGCTGCAACCGACTCTGTATGCACCCTGCAGGTTCTCAATCAAGATGAGACACCTTTGCT 524
Query 989 TTACAGTCTTGTATTCGGAGAGGGTGTTGTGAATGATGCAACGTCAGTTGTGGTCTTCAA 1048
|||||||||||| || |||||||| |||||||||||||| || || |||||| |||||||
Sbjct 525 TTACAGTCTTGTCTTTGGAGAGGGCGTTGTGAATGATGCCACATCTGTTGTGCTCTTCAA 584
Query 1049 CGCGATTCAGAGCTTTGATCTCACTCACCTAAACCACGAAGCTGCTTTTC-ATCTTCTTG 1107
|| |||||||||||||| ||||| ||||| ||||| ||||| ||||||| || ||||||
Sbjct 585 TGCAATTCAGAGCTTTGACCTCACCCACCTCAACCATGAAGCAGCTTTTCAAT-TTCTTG 643
Query 1108 GAAACTTCTTGTATTTGTTTCTCCTAAGTACCTTGCTTGGTGCT-GCAACCGGTCTGATA 1166
| |||||||| ||| |||||||| | || ||| | ||||||| | ||||| |||||||||
Sbjct 644 GGAACTTCTTCTATCTGTTTCTCTTGAGCACCGTACTTGGTG-TCGCAACTGGTCTGATA 702
Query 1167 AGTGCGTATGTTATCAAGAAGCTATACTTTGGAAGGCACTCAACTGACCGAGAGGTTGCC 1226
||||| ||||| |||||||||||||| |||||||||||||| ||||| ||||| ||||||
Sbjct 703 AGTGCTTATGTCATCAAGAAGCTATATTTTGGAAGGCACTCGACTGATCGAGAAGTTGCC 762
Query 1227 CTTATGATGCTTATGGCGTATCTTTCTTATATGCTTGCTGAGCTTTTCGACTTGAGCGGT 1286
|| |||||||||||||| |||||||| || |||||||||||||| |||| |||||| |||
Sbjct 763 CTCATGATGCTTATGGCATATCTTTCATACATGCTTGCTGAGCTATTCGCCTTGAGTGGT 822
Query 1287 ATCCTCACTGTGTTTTTCTGTGGTATTGTGATGTCCCATTACACATGGCACAATGTAACG 1346
|| || ||||| ||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 823 ATTCTAACTGTATTTTTCTGTGGGATTGTGATGTCCCATTACACTTGGCACAATGTAACC 882
Query 1347 GAGAGCTCAAGAATAACAACAAAGCATACCTTTGCAACTTTGTCATTTCTTGCGGAGACA 1406
|||||||||||||| || || |||||| ||||||| ||||||||||||||||| || ||
Sbjct 883 GAGAGCTCAAGAATTACTACCAAGCATGCCTTTGCTACTTTGTCATTTCTTGCTGAAACT 942
Query 1407 TTTATTTTCTTGTATGTTGGAATGGATGCCTTGGACATTGACAAGTGGAGATCCGTGAGT 1466
||||||||| | || |||||||||||||| |||||||| || || ||||||| |||||||
Sbjct 943 TTTATTTTCCTCTACGTTGGAATGGATGCATTGGACATAGAGAAATGGAGATTCGTGAGT 1002
Query 1467 GACA-CACCGGGAACATCGA-TCGCAGTGAGCTCAATCCTAATGGGTCTGGTCATGGTTG 1524
|||| | ||||| ||||| | | |||||||||||||| ||||||||||| |||||| |||
Sbjct 1003 GACAGC-CCGGGGACATC-AGTTGCAGTGAGCTCAATTCTAATGGGTCTAGTCATGCTTG 1060
Query 1525 GAAGAGCAGCGTTCGTCTTTCCGT-TATCGTTTC-TATCTAACTTAGCCAAGAAGAATCA 1582
|||||||||| || |||||||| | | || ||| |||| ||||||||||||||||||||
Sbjct 1061 GAAGAGCAGCTTTTGTCTTTCC-TCTTTC-CTTCTTATCAAACTTAGCCAAGAAGAATCA 1118
Query 1583 AAGCGAGAAAATCAACTTTAA-CATGCAGGTTGTGATTTGGTGGTCTGGTCTCATGAGAG 1641
||||||||||||||| | || || ||| |||||||| |||||| ||||||| |||||||
Sbjct 1119 GAGCGAGAAAATCAACATCAAGCA-GCAAGTTGTGATCTGGTGGGCTGGTCTAATGAGAG 1177
Query 1642 GTGCTGTATCTATGGCTCTTGCATACAACAAGTTTACAAGGGCCGGGCACACAGA-TGTA 1700
|||||||||||||||||||||| ||||| ||||||||||| | ||||||||||| | |
Sbjct 1178 GTGCTGTATCTATGGCTCTTGCCTACAATAAGTTTACAAGATCAGGGCACACAGAAT-TG 1236
Query 1701 CGCGGGAATGCAATCATGATCACGAGTACGATAACTGTCTGTCTTTTTAGCAC-AGTGGT 1759
|||||||||||||||||||| || ||||| ||||| ||||||||||||||||| | ||||
Sbjct 1237 CGCGGGAATGCAATCATGATTACCAGTACTATAACCGTCTGTCTTTTTAGCACCA-TGGT 1295
Query 1760 GTTTGGTATGCTGACCAAACCACTCATAAGCTACCTATTACCGCACCAGAACGCCACCAC 1819
||||||||||||||||||||| || ||||| |||||| | || || || || || |||||
Sbjct 1296 GTTTGGTATGCTGACCAAACCGCTGATAAGATACCTAATGCCACATCAAAAAGCGACCAC 1355
Query 1820 GAGCATGTTATCTGATGACAACACCCCAAAATCCATACATAT-CC-CTT-T-GTTGGACC 1875
||| |||||||| || || ||||| || ||||| || || || || || | | ||| |
Sbjct 1356 GAGTATGTTATCCGACGATAACACTCCGAAATCAATCCACATTCCGCTCCTCGATGG-CG 1414
Query 1876 AAGA-CTCG-TTCATT-GAGCCTT-CA-GGGAACCAC-A--ATGTGCCTCGGCCTGACAG 1927
|| | || | |||||| ||| || | |||| |||| | | ||||| || || | ||
Sbjct 1415 AACAGCTAGATTCATTTGAG--TTACCTGGGAGCCACCAGGACGTGCCACGACCAAATAG 1472
Query 1928 TAT-ACGTGGCTTCTTGACACGGCCCACTCGAACCGTGCATTACTACTGGAGACAATTTG 1986
| | | || ||| | | || ||||| || || || || | ||||||||||| ||||
Sbjct 1473 CCTTA-GAGGTTTCCTCATGCGCCCCACACGCACTGTCCACCATTACTGGAGACAGTTTG 1531
Query 1987 ATGACT-CCTTCATGCGACCCGTCTTTGGAGGTCGTGGCTTT-GTACCCTTTGTTCCAGG 2044
|||| | |||||||||| || || ||||| ||||| || ||| || || ||||| || ||
Sbjct 1532 ATGA-TGCCTTCATGCGTCCTGTGTTTGGTGGTCGCGG-TTTCGTTCCGTTTGTCCCTGG 1589
Query 2045 TTCTCCAACTGAGAGAAACCCTCC-TGATCTTAGTAA 2080
|||||| |||||||||| | | || |||||| |||||
Sbjct 1590 TTCTCCGACTGAGAGAAGCAC-CCATGATCTCAGTAA 1625
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87912285460
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5