BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G27200.1

Length=420
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg351774 jgi|Araly1|351774|fgenesh1_pg.C_scaffold_6002367           610    2e-174


> Ahg351774 jgi|Araly1|351774|fgenesh1_pg.C_scaffold_6002367
Length=420

 Score =  610 bits (330),  Expect = 2e-174
 Identities = 394/424 (93%), Gaps = 8/424 (2%)
 Strand=Plus/Plus

Query  1    ATGGCGACAAGTTTCTGCTCCTCCATCTCCATGCAAGCTCCTTTCTCGGCTACAACAACA  60
            ||||||||||||||||||||||||||||||||||||||||||   |||| ||||||||||
Sbjct  1    ATGGCGACAAGTTTCTGCTCCTCCATCTCCATGCAAGCTCCTAAATCGGGTACAACAACA  60

Query  61   AGGTTCTGTC-TCAACAAACAGGCTACGATTTTCAACAATGAAAAGACTAATAATCTCTC  119
            |||||| ||| || | |||| || |  |||||||||||||| ||||||   |||||||||
Sbjct  61   AGGTTCAGTCTTC-AGAAACCGGTTTTGATTTTCAACAATGGAAAGAC---TAATCTCTC  116

Query  120  CTTCAGCCT--A-CGACGTTTGATGCCTGCTCGTCTCGCAGTTTCTTGTGCAGTCAAGCA  176
             |||||| |  | ||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct  117  ATTCAGCTTGCATCGACGTTCGATGCCTGCTCGTCTCGCAGTTTCTTGTGGAGCCAAGCA  176

Query  177  AGAGACAGTAGAGAAAGTGTCTGAGATTGTCAAGAAGCAATTGTCGCTCACCGATGATCA  236
            ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  177  AGAGACAGTGGAGAAAGTGTCTGAGATTGTGAAGAAGCAATTGTCGCTCACCGATGATCA  236

Query  237  AAAAGTCACTGCCGGAACTAAATTTACCGAGCTTGGAGCTGATTCTCTCGACACGGTTGA  296
            ||||||||| || ||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct  237  AAAAGTCACCGCGGGAACCAAATTTACCGAACTTGGAGCTGATTCTCTCGACACGGTTGA  296

Query  297  GATAGTGATGGGTTTGGAGGAAGAGTTCGGGATAACAATGGCGGAAGAGAGAGCAAAGGA  356
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GATAGTGATGGGTTTGGAGGAAGAGTTCGGGATAACAATGGCGGAAGAGAGAGCAAAGGA  356

Query  357  GATTGCAACAGTCCAACAGGCTGCTGAACTCATTGAAGAACTCGTCCAAGAGAAGACTGC  416
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  357  GATTGCAACAGTCCAACAGGCTGCTGAACTCATTGAAGAACTCGTCCAAGAGAAGACTGC  416

Query  417  TTAG  420
            ||||
Sbjct  417  TTAG  420



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15109613244


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5