BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27210.1
Length=1187
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489607 jgi|Araly1|489607|fgenesh2_kg.6__2741__AT5G27210.1 1616 0.0
Ahg903337 jgi|Araly1|903337|Al_scaffold_0003_465 630 6e-180
> Ahg489607 jgi|Araly1|489607|fgenesh2_kg.6__2741__AT5G27210.1
Length=1112
Score = 1616 bits (875), Expect = 0.0
Identities = 1020/1088 (94%), Gaps = 18/1088 (2%)
Strand=Plus/Plus
Query 47 TAACCATTGATGAAATGCGAGTTCTCGACGAAATTGCAGAGTCACCATTTCTGATTTCAC 106
||||||||||||||||||||||||| || |||||||||||||| || |||||||||||||
Sbjct 1 TAACCATTGATGAAATGCGAGTTCTTGAGGAAATTGCAGAGTCCCCTTTTCTGATTTCAC 60
Query 107 CGCTAAACCCTAATTCGACAGCCAATGGATATAGATGGGTCGATAAGTGCCATGGATTCT 166
||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 61 AGCTAAACCCTAATTCAACAGCCAATGGATATAAATGGGTCGATAAGTGCCATGGATTCT 120
Query 167 TACATAACACGGTTCTCGTTGCGGCTTCTCTCTTCTTCGTCGCTTACTTAGCTTACGAAG 226
|||| ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 121 TACACAACACGGTTCTTGTTGCGGCTTCTCTTTTCTTTGTCGCTTACTTAGCTTACGAAG 180
Query 227 CGAAGAAGAGTCTGTCTAAACTCTCGAATCGGAGATCTTATATCATGATTGCTTATTATG 286
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 181 CGAAGAAGAGTTTGTCTAAACTCTCGAATCGGAGATCTTATATCATGATCGCTTATTATG 240
Query 287 GTTGTCTTTGGCTTGTTAGCTTGCTCAATCTTGCTTGGTGCTGTCTCCAGGGTTGGGAAT 346
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGTGTCTTTGGCTTGTTAGCTTGCTCAATCTTGCTTGGTGCTGTCTCCAGGGTTGGGAAT 300
Query 347 GTACTCCTGGGAAAGAAGTTGTTTGGAATCTGTTAACTTTGTTCACAACATCTGGAATGT 406
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 301 GTACTCCTGGGAAACAAGTTGTTTGGAATCTGTTAACTTTGTTTACAACATCTGGAATGT 360
Query 407 TGTTTCTGGAAGTAAGCTTGGTGGCTTTTCTCTTCCAAGGAAACTATGCAAGCGGTGCAG 466
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 361 TGTTTCTGGAAGTAAGCTTGGTGGCTTTTCTCTTCCAAGGGAACTATGCAAGTGGTGCAG 420
Query 467 AAGCATTAACTAGAACGTTCCTAATCTCGGGTTTTATTGTTGCTCTTGATTTGCTTCTCA 526
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 421 AAGCATTAACTAGAACTTTCCTAATCTCGGGTTTTATTGTGGCTCTTGATTTGCTTCTCA 480
Query 527 AGGCAATTTTTCTCTTTGGATTTGGAGTGCCATTGTTTATTGACAACAATGAAAATGGAA 586
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 481 AGGCAATTTTTCTGTTTGGATTTGGCGTGCCATTGTTTATTGACAACAATGAAAATGGAA 540
Query 587 AAACGTTCAAATGGGGCTTATGGATCATTCATAAGCTTCTACTCACTGGCGTTTATGGGA 646
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AAACGTTCAAATGGGGATTATGGATCATTCATAAGCTTCTACTCACTGGCGTTTATGGGA 600
Query 647 TGGTGTTCTTGATGTACAACTCTAGGTGGAGAGAAAAATTGCCTGCAAGGCCTGCATTCT 706
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 601 TGGTATTCTTGATGTACAACTCTAGGTGGAGAGAAAAATTACCTGCAAGGCCTGCATTCT 660
Query 707 ACAACTACATAATCATCATGTTCGCCTTATACAGCCTTTACCTAGTTGCATCTGCGTTTA 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ACAACTACATAATCATCATGTTCGCCTTATACAGCCTTTACCTAGTTGCATCTGCGTTTA 720
Query 767 CCGCAAACAACGCGCATTTTGGTTTCTGGTTATATGGGATCATGAGTGTTTGCTACCACG 826
||||||||| | |||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 721 CCGCAAACAGCACGCATTTTGGATTCTGGTTGTATGGGATCATGAGTGTTTGCTACCACG 780
Query 827 CATTATACCTTCCTCTTCTTTACATAACGTTCCTCGCAGACTTTTTCCAGGAAGAAGATT 886
| ||||||||||||||||||||| | || ||||||||||||||||||||||||||||||
Sbjct 781 CGTTATACCTTCCTCTTCTTTACGTTACTTTCCTCGCAGACTTTTTCCAGGAAGAAGATC 840
Query 887 TGAACTTGGAGAATGTATACTACTCAGAGATGA-AGGATGCTGGATTTTTCGACTCTGAT 945
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 841 TGAACTTGGAGAATGTATACTACTCAGAGATGAGAG-ATGCTGGATTTTTCGACTCTGAT 899
Query 946 TGGGAATAGGACTAGGGTAACAAACATCTTCCTCATTTTCTCAATCTGTAAATACACGTT 1005
|||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||
Sbjct 900 TGGGAATAGGACTAGGGTTACAAACATCTTCCTCATCTTCTGAATCTGTAAATACACGTT 959
Query 1006 GGGTAGGATCTCCTA-GA----AG-TCATGGCTGCTTTTT----CCGGCTTTGGCGGGTT 1055
|| ||||||||| || || || | ||||| ||||||| ||||||||| | ||
Sbjct 960 GGATAGGATCTCTTAAGATTCGAGGT-ATGGCCGCTTTTTTTTTCCGGCTTTGT-G--TT 1015
Query 1056 ACATTTTAGGGTCTAGTCTTTTGTATGTCTGTACTTTTTCC-TCATGTTTCTTTCTCTTT 1114
|| ||||||||| ||||||| | | ||| ||||||| | || ||||| ||||||||||||
Sbjct 1016 ACTTTTTAGGGTTTAGTCTTGTCTGTGTTTGTACTTGT-CCATCATGCTTCTTTCTCTTT 1074
Query 1115 TATAAATC 1122
||| ||||
Sbjct 1075 TATTAATC 1082
> Ahg903337 jgi|Araly1|903337|Al_scaffold_0003_465
Length=936
Score = 630 bits (341), Expect = 6e-180
Identities = 551/649 (85%), Gaps = 27/649 (4%)
Strand=Plus/Plus
Query 61 ATGCGAGTTCTCGACGAAATTGCAGAGTCACCATTTCT-GATTTCACCGCTAAACCCTAA 119
||||||||||||| ||| ||||| |||||||| ||||| |||||| | ||| | ||||||
Sbjct 1 ATGCGAGTTCTCGGCGAGATTGCGGAGTCACC-TTTCTCGATTTCTCGGCTGAGCCCTAA 59
Query 120 TTCGACAGCCA----ATGG-ATAT----AGATGGGTC-GATAAGTGCCAT-GGATTCTTA 168
|||||| |||| | || ||| |||||||| || ||||| ||| || ||| |
Sbjct 60 TTCGACGGCCACCGGAGGGTTTATCGGCGGATGGGTCGGA-AAGTGTCATGGGTTTC-TG 117
Query 169 CATAACACGGTTCTCGTTGCGGCTTCT-CTCTTCTTCGTCGCTTACTTAGCTTACGAAGC 227
|||||||||||| | ||| || ||| || | ||||||||||||||||| ||||| ||
Sbjct 118 CATAACACGGTTTTGGTTTTAGCATCTATTC-TATTCGTCGCTTACTTAGCCTACGAGGC 176
Query 228 GAAGAAGAGTC-TGTCTAAACTCTCGAATCGGAGATCTTATATCATGATTGCTTATTATG 286
||||||||| | |||| || | |||||||||||||||||||| ||||| || |||||||
Sbjct 177 GAAGAAGAG-CTTGTCCAAGTTGTCGAATCGGAGATCTTATATTATGATCGCCTATTATG 235
Query 287 GTTGTCTTTGGCTTGTTAGCTTGCTCAATCTTGCTTGGTGCTGTCTCCAGGGTTGGGAAT 346
||| |||||||||||||||||||||||||||||||||||| ||||| |||| |||||||
Sbjct 236 GTTTTCTTTGGCTTGTTAGCTTGCTCAATCTTGCTTGGTGTTGTCTTCAGGCATGGGAAT 295
Query 347 GTACTCCTGGGAAAGAAGTTGTTTGGAATCTGTTAACTTTGTTCACAACATCTGGAATGT 406
| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 296 GCACTCCTGGGAAAGAAGTTATTTGGAATCTATTAACTTTGTTCACAACATCTGGAATGT 355
Query 407 TGTTTCTGGAAGTAAGCTTGGTGGCTTTTCTCTTCCAAGGAAACTATGCAAGCGGTGCAG 466
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
Sbjct 356 TGTTTCTGGAAGTAAGCTTGGTAGCCTTTCTCTTCCAAGGAAACTATGCAAGCGGTGCTG 415
Query 467 AAGCATTAACTA-GAACGTTCCTAATCTCGGGTTTTATTGTTGCTCTTGATTTGCTTCTC 525
|||||||||| | |||| ||||| |||||||| || || | | ||| ||||||||||||
Sbjct 416 AAGCATTAAC-ACGAACTTTCCTCATCTCGGGGCTTGTTATAGGTCTCGATTTGCTTCTC 474
Query 526 AAGGCAATTTTTCTCTTTGGATTTGGAGTGCCATTGTTTATTGACAACAATGAAAATGGA 585
|||||||||| |||||||||||||||||| ||||||||||| |||||||||||| || |
Sbjct 475 AAGGCAATTTATCTCTTTGGATTTGGAGTACCATTGTTTATCGACAACAATGAACATATA 534
Query 586 -AAAACGTTCAAATGGGGCTTATGGATCATTCATAAGCTTCT-ACTCA-CTGGCGTTTAT 642
|||| ||||||||||||||||||| |||| || ||||| || ||| | ||||| |||||
Sbjct 535 CAAAA-GTTCAAATGGGGCTTATGGGTCATCCACAAGCT-CTTACT-AGCTGGCATTTAT 591
Query 643 GGGATGGTGTTCTTGATGTACAACTCTAGGTGGAGAGAAAAATTGCCTG 691
|| ||| | ||||| ||||||||||| | |||||||| | ||| ||||
Sbjct 592 GGTATGATATTCTTCATGTACAACTCCAAATGGAGAGAGAGATTACCTG 640
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44298829554
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5